data_8IJQ
#
_model_server_result.job_id            AoliawYkw8ACLzl7pt3s9w 
_model_server_result.datetime_utc      '2024-11-22 10:10:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ijq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    8IJQ 
#
_exptl.entry_id    8IJQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              537.901 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)PALMITAMIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8IJQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IJQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 118 A CYS 261 1_555 A SG CYS 150 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 118 B CYS 261 1_555 B SG CYS 150 B CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 118 C CYS 261 1_555 C SG CYS 150 C CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 D SG CYS 118 D CYS 261 1_555 D SG CYS 150 D CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 E SG CYS 118 E CYS 261 1_555 E SG CYS 150 E CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 F SG CYS 118 F CYS 261 1_555 F SG CYS 150 F CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C34 H67 N O3' 
_chem_comp.formula_weight    537.901 
_chem_comp.id                16C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)PALMITAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     C16-CERAMIDE;N-PALMITOYL-D-ERYTHRO-SPHINGOSINE;(2S,3R,4E)-2-PALMITOYLAMINOOCTADEC-4-ENE-1,3-DIOL;(2S,3R,4E)-2-PALMITOYLAMINO-1,3-OCTADEC-4-ENEDIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O19 C19 16C doub 1 n n 
C19 N2 16C sing 2 n n 
C19 C20 16C sing 3 n n 
N2 C2 16C sing 4 n n 
N2 HN2 16C sing 5 n n 
C2 C1 16C sing 6 n n 
C2 C3 16C sing 7 n n 
C2 H2 16C sing 8 n n 
C1 O1 16C sing 9 n n 
C1 H11 16C sing 10 n n 
C1 H12 16C sing 11 n n 
O1 HO1 16C sing 12 n n 
C3 C4 16C sing 13 n n 
C3 O3 16C sing 14 n n 
C3 H3 16C sing 15 n n 
C4 C5 16C doub 16 e n 
C4 H4 16C sing 17 n n 
C5 C6 16C sing 18 n n 
C5 H5 16C sing 19 n n 
C6 C7 16C sing 20 n n 
C6 H61 16C sing 21 n n 
C6 H62 16C sing 22 n n 
C7 C8 16C sing 23 n n 
C7 H71 16C sing 24 n n 
C7 H72 16C sing 25 n n 
C8 C9 16C sing 26 n n 
C8 H81 16C sing 27 n n 
C8 H82 16C sing 28 n n 
C9 C10 16C sing 29 n n 
C9 H91 16C sing 30 n n 
C9 H92 16C sing 31 n n 
C10 C11 16C sing 32 n n 
C10 H101 16C sing 33 n n 
C10 H102 16C sing 34 n n 
C11 C12 16C sing 35 n n 
C11 H111 16C sing 36 n n 
C11 H112 16C sing 37 n n 
C12 C13 16C sing 38 n n 
C12 H121 16C sing 39 n n 
C12 H122 16C sing 40 n n 
C13 C14 16C sing 41 n n 
C13 H131 16C sing 42 n n 
C13 H132 16C sing 43 n n 
C14 C15 16C sing 44 n n 
C14 H141 16C sing 45 n n 
C14 H142 16C sing 46 n n 
C15 C16 16C sing 47 n n 
C15 H151 16C sing 48 n n 
C15 H152 16C sing 49 n n 
C16 C17 16C sing 50 n n 
C16 H161 16C sing 51 n n 
C16 H162 16C sing 52 n n 
C17 C18 16C sing 53 n n 
C17 H171 16C sing 54 n n 
C17 H172 16C sing 55 n n 
C18 H181 16C sing 56 n n 
C18 H182 16C sing 57 n n 
C18 H183 16C sing 58 n n 
O3 HO3 16C sing 59 n n 
C20 C21 16C sing 60 n n 
C20 H201 16C sing 61 n n 
C20 H202 16C sing 62 n n 
C21 C22 16C sing 63 n n 
C21 H211 16C sing 64 n n 
C21 H212 16C sing 65 n n 
C22 C23 16C sing 66 n n 
C22 H221 16C sing 67 n n 
C22 H222 16C sing 68 n n 
C23 C24 16C sing 69 n n 
C23 H231 16C sing 70 n n 
C23 H232 16C sing 71 n n 
C24 C25 16C sing 72 n n 
C24 H241 16C sing 73 n n 
C24 H242 16C sing 74 n n 
C25 C26 16C sing 75 n n 
C25 H251 16C sing 76 n n 
C25 H252 16C sing 77 n n 
C26 C27 16C sing 78 n n 
C26 H261 16C sing 79 n n 
C26 H262 16C sing 80 n n 
C27 C28 16C sing 81 n n 
C27 H271 16C sing 82 n n 
C27 H272 16C sing 83 n n 
C28 C29 16C sing 84 n n 
C28 H281 16C sing 85 n n 
C28 H282 16C sing 86 n n 
C29 C30 16C sing 87 n n 
C29 H291 16C sing 88 n n 
C29 H292 16C sing 89 n n 
C30 C31 16C sing 90 n n 
C30 H301 16C sing 91 n n 
C30 H302 16C sing 92 n n 
C31 C32 16C sing 93 n n 
C31 H311 16C sing 94 n n 
C31 H312 16C sing 95 n n 
C32 C33 16C sing 96 n n 
C32 H321 16C sing 97 n n 
C32 H322 16C sing 98 n n 
C33 C34 16C sing 99 n n 
C33 H331 16C sing 100 n n 
C33 H332 16C sing 101 n n 
C34 H341 16C sing 102 n n 
C34 H342 16C sing 103 n n 
C34 H343 16C sing 104 n n 
#
_atom_sites.entry_id                     8IJQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 16C A 1 500 500 16C CER . 
H 2 16C B 1 500 500 16C CER . 
I 2 16C C 1 500 500 16C CER . 
J 2 16C D 1 500 500 16C CER . 
K 2 16C E 1 500 500 16C CER . 
L 2 16C F 1 500 500 16C CER . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O19 16C . . . H 2 174.614 176.76 180.193 1 25.62 ? O19 16C 500 B 1 
HETATM 2 C C19 16C . . . H 2 175.142 177.097 181.197 1 25.62 ? C19 16C 500 B 1 
HETATM 3 N N2 16C . . . H 2 174.366 177.25 182.413 1 25.62 ? N2 16C 500 B 1 
HETATM 4 C C2 16C . . . H 2 172.94 176.988 182.403 1 25.62 ? C2 16C 500 B 1 
HETATM 5 C C1 16C . . . H 2 172.696 175.536 182.802 1 25.62 ? C1 16C 500 B 1 
HETATM 6 O O1 16C . . . H 2 173.123 175.367 184.125 1 25.62 ? O1 16C 500 B 1 
HETATM 7 C C3 16C . . . H 2 172.241 177.913 183.396 1 25.62 ? C3 16C 500 B 1 
HETATM 8 C C4 16C . . . H 2 172.128 179.314 182.801 1 25.62 ? C4 16C 500 B 1 
HETATM 9 C C5 16C . . . H 2 171.888 179.461 181.517 1 25.62 ? C5 16C 500 B 1 
HETATM 10 C C6 16C . . . H 2 171.78 180.859 180.916 1 25.62 ? C6 16C 500 B 1 
HETATM 11 C C7 16C . . . H 2 173.064 181.627 181.221 1 25.62 ? C7 16C 500 B 1 
HETATM 12 C C8 16C . . . H 2 173.951 181.85 179.996 1 25.62 ? C8 16C 500 B 1 
HETATM 13 C C9 16C . . . H 2 174.29 180.557 179.257 1 25.62 ? C9 16C 500 B 1 
HETATM 14 C C10 16C . . . H 2 175.644 180.632 178.557 1 25.62 ? C10 16C 500 B 1 
HETATM 15 C C11 16C . . . H 2 175.573 180.215 177.091 1 25.62 ? C11 16C 500 B 1 
HETATM 16 C C12 16C . . . H 2 176.823 180.628 176.318 1 25.62 ? C12 16C 500 B 1 
HETATM 17 C C13 16C . . . H 2 177.293 179.53 175.366 1 25.62 ? C13 16C 500 B 1 
HETATM 18 C C14 16C . . . H 2 178.624 179.861 174.692 1 25.62 ? C14 16C 500 B 1 
HETATM 19 C C15 16C . . . H 2 178.515 181 173.68 1 25.62 ? C15 16C 500 B 1 
HETATM 20 C C16 16C . . . H 2 177.295 180.866 172.769 1 25.62 ? C16 16C 500 B 1 
HETATM 21 C C17 16C . . . H 2 177.001 182.154 172.004 1 25.62 ? C17 16C 500 B 1 
HETATM 22 C C18 16C . . . H 2 175.809 182.004 171.062 1 25.62 ? C18 16C 500 B 1 
HETATM 23 O O3 16C . . . H 2 170.958 177.424 183.665 1 25.62 ? O3 16C 500 B 1 
HETATM 24 C C20 16C . . . H 2 176.642 177.376 181.218 1 25.62 ? C20 16C 500 B 1 
HETATM 25 C C21 16C . . . H 2 177.431 176.482 180.266 1 25.62 ? C21 16C 500 B 1 
HETATM 26 C C22 16C . . . H 2 178.794 177.08 179.925 1 25.62 ? C22 16C 500 B 1 
HETATM 27 C C23 16C . . . H 2 179.624 176.159 179.037 1 25.62 ? C23 16C 500 B 1 
HETATM 28 C C24 16C . . . H 2 180.158 176.879 177.803 1 25.62 ? C24 16C 500 B 1 
HETATM 29 C C25 16C . . . H 2 181.604 177.341 177.97 1 25.62 ? C25 16C 500 B 1 
HETATM 30 C C26 16C . . . H 2 182.029 178.285 176.85 1 25.62 ? C26 16C 500 B 1 
HETATM 31 C C27 16C . . . H 2 181.95 179.745 177.283 1 25.62 ? C27 16C 500 B 1 
HETATM 32 C C28 16C . . . H 2 182.635 180.688 176.297 1 25.62 ? C28 16C 500 B 1 
HETATM 33 C C29 16C . . . H 2 182.726 182.11 176.847 1 25.62 ? C29 16C 500 B 1 
HETATM 34 C C30 16C . . . H 2 184.164 182.49 177.188 1 25.62 ? C30 16C 500 B 1 
HETATM 35 C C31 16C . . . H 2 184.245 183.624 178.206 1 25.62 ? C31 16C 500 B 1 
HETATM 36 C C32 16C . . . H 2 185.347 183.381 179.235 1 25.62 ? C32 16C 500 B 1 
HETATM 37 C C33 16C . . . H 2 185.9 184.678 179.819 1 25.62 ? C33 16C 500 B 1 
HETATM 38 C C34 16C . . . H 2 186.764 184.43 181.052 1 25.62 ? C34 16C 500 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    83 
_model_server_stats.query_time_ms           566 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           38 
#