data_8IK5
#
_model_server_result.job_id            fWM1TlgIfsdfV0r6TRtsvg 
_model_server_result.datetime_utc      '2024-12-19 09:58:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ik5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    8IK5 
#
_exptl.entry_id    8IK5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8IK5 
_cell.length_a            46.29 
_cell.length_b            46.419 
_cell.length_c            96.098 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IK5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N3 DC 2 A DC 2 1_555 B N1 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 2 A DC 2 1_555 B O6 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 2 A DC 2 1_555 B N2 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DA 3 A DA 3 1_555 B N3 DT 14 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N6 DA 3 A DA 3 1_555 B O4 DT 14 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N3 DT 4 A DT 4 1_555 B N1 DA 13 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A O4 DT 4 A DT 4 1_555 B N6 DA 13 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N1 DA 5 A DA 5 1_555 B N3 DT 12 B DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N6 DA 5 A DA 5 1_555 B O4 DT 12 B DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N3 DT 6 A DT 6 1_555 B N1 DA 11 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O4 DT 6 A DT 6 1_555 B N6 DA 11 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N3 DT 7 A DT 7 1_555 B N1 DA 10 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O4 DT 7 A DT 7 1_555 B N6 DA 10 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N3 DT 8 A DT 8 1_555 B N1 DA 9 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O4 DT 8 A DT 8 1_555 B N6 DA 9 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 DA 9 A DA 9 1_555 B N3 DT 8 B DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N6 DA 9 A DA 9 1_555 B O4 DT 8 B DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N1 DA 10 A DA 10 1_555 B N3 DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N6 DA 10 A DA 10 1_555 B O4 DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N3 DT 11 A DT 11 1_555 B N1 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O4 DT 11 A DT 11 1_555 B N6 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N3 DC 12 A DC 12 1_555 B N1 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N4 DC 12 A DC 12 1_555 B O6 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A O2 DC 12 A DC 12 1_555 B N2 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N3 DT 13 A DT 13 1_555 B N1 DA 4 B DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O4 DT 13 A DT 13 1_555 B N6 DA 4 B DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N3 DT 14 A DT 14 1_555 B N1 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A O4 DT 14 A DT 14 1_555 B N6 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 A N3 DC 15 A DC 15 1_555 B N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A N4 DC 15 A DC 15 1_555 B O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 A O2 DC 15 A DC 15 1_555 B N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 263 n n 
C1 C2 GOL sing 264 n n 
C1 H11 GOL sing 265 n n 
C1 H12 GOL sing 266 n n 
O1 HO1 GOL sing 267 n n 
C2 O2 GOL sing 268 n n 
C2 C3 GOL sing 269 n n 
C2 H2 GOL sing 270 n n 
O2 HO2 GOL sing 271 n n 
C3 O3 GOL sing 272 n n 
C3 H31 GOL sing 273 n n 
C3 H32 GOL sing 274 n n 
O3 HO3 GOL sing 275 n n 
#
_atom_sites.entry_id                     8IK5 
_atom_sites.fract_transf_matrix[1][1]    0.021603 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL C 1 301 201 GOL GOL . 
E 4 GOL C 1 302 202 GOL GOL . 
F 5 HOH A 1 101 81 HOH HOH . 
F 5 HOH A 2 102 14 HOH HOH . 
F 5 HOH A 3 103 49 HOH HOH . 
F 5 HOH A 4 104 44 HOH HOH . 
F 5 HOH A 5 105 19 HOH HOH . 
F 5 HOH A 6 106 35 HOH HOH . 
F 5 HOH A 7 107 38 HOH HOH . 
F 5 HOH A 8 108 24 HOH HOH . 
F 5 HOH A 9 109 34 HOH HOH . 
G 5 HOH B 1 101 4 HOH HOH . 
G 5 HOH B 2 102 16 HOH HOH . 
G 5 HOH B 3 103 99 HOH HOH . 
G 5 HOH B 4 104 36 HOH HOH . 
G 5 HOH B 5 105 68 HOH HOH . 
G 5 HOH B 6 106 28 HOH HOH . 
G 5 HOH B 7 107 98 HOH HOH . 
G 5 HOH B 8 108 29 HOH HOH . 
G 5 HOH B 9 109 18 HOH HOH . 
G 5 HOH B 10 110 22 HOH HOH . 
G 5 HOH B 11 111 12 HOH HOH . 
G 5 HOH B 12 112 13 HOH HOH . 
G 5 HOH B 13 113 67 HOH HOH . 
G 5 HOH B 14 114 78 HOH HOH . 
G 5 HOH B 15 115 80 HOH HOH . 
G 5 HOH B 16 116 37 HOH HOH . 
H 5 HOH C 1 401 40 HOH HOH . 
H 5 HOH C 2 402 62 HOH HOH . 
H 5 HOH C 3 403 83 HOH HOH . 
H 5 HOH C 4 404 31 HOH HOH . 
H 5 HOH C 5 405 66 HOH HOH . 
H 5 HOH C 6 406 7 HOH HOH . 
H 5 HOH C 7 407 32 HOH HOH . 
H 5 HOH C 8 408 59 HOH HOH . 
H 5 HOH C 9 409 87 HOH HOH . 
H 5 HOH C 10 410 1 HOH HOH . 
H 5 HOH C 11 411 2 HOH HOH . 
H 5 HOH C 12 412 3 HOH HOH . 
H 5 HOH C 13 413 42 HOH HOH . 
H 5 HOH C 14 414 54 HOH HOH . 
H 5 HOH C 15 415 51 HOH HOH . 
H 5 HOH C 16 416 9 HOH HOH . 
H 5 HOH C 17 417 8 HOH HOH . 
H 5 HOH C 18 418 27 HOH HOH . 
H 5 HOH C 19 419 6 HOH HOH . 
H 5 HOH C 20 420 53 HOH HOH . 
H 5 HOH C 21 421 64 HOH HOH . 
H 5 HOH C 22 422 86 HOH HOH . 
H 5 HOH C 23 423 23 HOH HOH . 
H 5 HOH C 24 424 26 HOH HOH . 
H 5 HOH C 25 425 10 HOH HOH . 
H 5 HOH C 26 426 70 HOH HOH . 
H 5 HOH C 27 427 85 HOH HOH . 
H 5 HOH C 28 428 41 HOH HOH . 
H 5 HOH C 29 429 73 HOH HOH . 
H 5 HOH C 30 430 88 HOH HOH . 
H 5 HOH C 31 431 47 HOH HOH . 
H 5 HOH C 32 432 25 HOH HOH . 
H 5 HOH C 33 433 5 HOH HOH . 
H 5 HOH C 34 434 65 HOH HOH . 
H 5 HOH C 35 435 20 HOH HOH . 
H 5 HOH C 36 436 52 HOH HOH . 
H 5 HOH C 37 437 63 HOH HOH . 
H 5 HOH C 38 438 55 HOH HOH . 
H 5 HOH C 39 439 72 HOH HOH . 
H 5 HOH C 40 440 100 HOH HOH . 
H 5 HOH C 41 441 46 HOH HOH . 
H 5 HOH C 42 442 90 HOH HOH . 
H 5 HOH C 43 443 82 HOH HOH . 
H 5 HOH C 44 444 74 HOH HOH . 
H 5 HOH C 45 445 75 HOH HOH . 
H 5 HOH C 46 446 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 19.525 -6.393 12.502 1 60.59 ? C1 GOL 301 C 1 
HETATM 2 O O1 GOL . . . D 4 20.237 -5.288 13.046 1 45.51 ? O1 GOL 301 C 1 
HETATM 3 C C2 GOL . . . D 4 19.996 -7.73 13.19 1 69.35 ? C2 GOL 301 C 1 
HETATM 4 O O2 GOL . . . D 4 20.88 -8.461 12.398 1 73.45 ? O2 GOL 301 C 1 
HETATM 5 C C3 GOL . . . D 4 18.703 -8.535 13.427 1 68.4 ? C3 GOL 301 C 1 
HETATM 6 O O3 GOL . . . D 4 17.659 -7.624 13.508 1 58.21 ? O3 GOL 301 C 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#