data_8IKM # _model_server_result.job_id Yd6KUZyTkHZUWiGUKeADug _model_server_result.datetime_utc '2024-11-14 21:09:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ikm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":505}' # _entry.id 8IKM # _exptl.entry_id 8IKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8IKM _cell.length_a 83.804 _cell.length_b 83.804 _cell.length_c 105.033 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 64 B GLU 64 1_555 B N SEP 65 B SEP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 B C SEP 65 B SEP 65 1_555 B N THR 66 B THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 C C GLN 64 C GLN 64 1_555 C N SEP 65 C SEP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 C C SEP 65 C SEP 65 1_555 C N ILE 66 C ILE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A SG CYS 10 A CYS 150 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A SG CYS 14 A CYS 154 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A SG CYS 26 A CYS 166 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc4 A SG CYS 29 A CYS 169 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc5 A SG CYS 56 A CYS 196 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 A SG CYS 61 A CYS 201 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc7 A SG CYS 72 A CYS 212 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 A NE2 HIS 75 A HIS 215 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc9 A SG CYS 98 A CYS 238 1_555 H ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc10 A SG CYS 101 A CYS 241 1_555 H ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc11 A SG CYS 113 A CYS 253 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 A ND1 HIS 117 A HIS 257 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc13 A SG CYS 120 A CYS 260 1_555 H ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc14 A SG CYS 123 A CYS 263 1_555 H ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc15 A SG CYS 149 A CYS 289 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc16 A SG CYS 153 A CYS 293 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc17 A SG CYS 192 A CYS 332 1_555 I ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc18 A SG CYS 197 A CYS 337 1_555 I ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc19 A SG CYS 212 A CYS 352 1_555 I ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc20 A SG CYS 220 A CYS 360 1_555 I ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc21 A SG CYS 225 A CYS 365 1_555 G ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc22 A SG CYS 228 A CYS 368 1_555 G ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc23 A NE2 HIS 233 A HIS 373 1_555 G ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc24 A SG CYS 237 A CYS 377 1_555 G ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc25 G ZN ZN . A ZN 504 1_555 L O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8IKM _atom_sites.fract_transf_matrix[1][1] 0.011933 _atom_sites.fract_transf_matrix[1][2] 0.006889 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 501 501 ZN ZN . E 4 ZN A 1 502 502 ZN ZN . F 4 ZN A 1 503 503 ZN ZN . G 4 ZN A 1 504 504 ZN ZN . H 4 ZN A 1 505 505 ZN ZN . I 4 ZN A 1 506 506 ZN ZN . J 5 GOL A 1 507 507 GOL GOL . K 6 PEG A 1 508 508 PEG PEG . L 7 HOH A 1 601 105 HOH HOH . L 7 HOH A 2 602 39 HOH HOH . L 7 HOH A 3 603 30 HOH HOH . L 7 HOH A 4 604 66 HOH HOH . L 7 HOH A 5 605 8 HOH HOH . L 7 HOH A 6 606 73 HOH HOH . L 7 HOH A 7 607 107 HOH HOH . L 7 HOH A 8 608 22 HOH HOH . L 7 HOH A 9 609 17 HOH HOH . L 7 HOH A 10 610 54 HOH HOH . L 7 HOH A 11 611 40 HOH HOH . L 7 HOH A 12 612 111 HOH HOH . L 7 HOH A 13 613 65 HOH HOH . L 7 HOH A 14 614 60 HOH HOH . L 7 HOH A 15 615 96 HOH HOH . L 7 HOH A 16 616 19 HOH HOH . L 7 HOH A 17 617 46 HOH HOH . L 7 HOH A 18 618 7 HOH HOH . L 7 HOH A 19 619 112 HOH HOH . L 7 HOH A 20 620 95 HOH HOH . L 7 HOH A 21 621 25 HOH HOH . L 7 HOH A 22 622 28 HOH HOH . L 7 HOH A 23 623 26 HOH HOH . L 7 HOH A 24 624 75 HOH HOH . L 7 HOH A 25 625 2 HOH HOH . L 7 HOH A 26 626 4 HOH HOH . L 7 HOH A 27 627 16 HOH HOH . L 7 HOH A 28 628 9 HOH HOH . L 7 HOH A 29 629 55 HOH HOH . L 7 HOH A 30 630 50 HOH HOH . L 7 HOH A 31 631 24 HOH HOH . L 7 HOH A 32 632 43 HOH HOH . L 7 HOH A 33 633 20 HOH HOH . L 7 HOH A 34 634 67 HOH HOH . L 7 HOH A 35 635 53 HOH HOH . L 7 HOH A 36 636 57 HOH HOH . L 7 HOH A 37 637 18 HOH HOH . L 7 HOH A 38 638 70 HOH HOH . L 7 HOH A 39 639 58 HOH HOH . L 7 HOH A 40 640 11 HOH HOH . L 7 HOH A 41 641 45 HOH HOH . L 7 HOH A 42 642 34 HOH HOH . L 7 HOH A 43 643 44 HOH HOH . L 7 HOH A 44 644 108 HOH HOH . L 7 HOH A 45 645 93 HOH HOH . L 7 HOH A 46 646 56 HOH HOH . L 7 HOH A 47 647 80 HOH HOH . L 7 HOH A 48 648 61 HOH HOH . L 7 HOH A 49 649 59 HOH HOH . L 7 HOH A 50 650 3 HOH HOH . L 7 HOH A 51 651 35 HOH HOH . L 7 HOH A 52 652 51 HOH HOH . L 7 HOH A 53 653 29 HOH HOH . L 7 HOH A 54 654 31 HOH HOH . L 7 HOH A 55 655 48 HOH HOH . L 7 HOH A 56 656 102 HOH HOH . L 7 HOH A 57 657 52 HOH HOH . L 7 HOH A 58 658 104 HOH HOH . L 7 HOH A 59 659 69 HOH HOH . L 7 HOH A 60 660 103 HOH HOH . L 7 HOH A 61 661 15 HOH HOH . L 7 HOH A 62 662 98 HOH HOH . L 7 HOH A 63 663 99 HOH HOH . L 7 HOH A 64 664 71 HOH HOH . L 7 HOH A 65 665 83 HOH HOH . M 7 HOH B 1 101 10 HOH HOH . M 7 HOH B 2 102 5 HOH HOH . M 7 HOH B 3 103 74 HOH HOH . M 7 HOH B 4 104 32 HOH HOH . M 7 HOH B 5 105 63 HOH HOH . M 7 HOH B 6 106 13 HOH HOH . M 7 HOH B 7 107 42 HOH HOH . M 7 HOH B 8 108 33 HOH HOH . M 7 HOH B 9 109 6 HOH HOH . M 7 HOH B 10 110 27 HOH HOH . M 7 HOH B 11 111 76 HOH HOH . M 7 HOH B 12 112 90 HOH HOH . M 7 HOH B 13 113 14 HOH HOH . M 7 HOH B 14 114 47 HOH HOH . M 7 HOH B 15 115 64 HOH HOH . M 7 HOH B 16 116 37 HOH HOH . M 7 HOH B 17 117 23 HOH HOH . M 7 HOH B 18 118 82 HOH HOH . M 7 HOH B 19 119 36 HOH HOH . M 7 HOH B 20 120 77 HOH HOH . M 7 HOH B 21 121 88 HOH HOH . M 7 HOH B 22 122 49 HOH HOH . M 7 HOH B 23 123 1 HOH HOH . M 7 HOH B 24 124 41 HOH HOH . M 7 HOH B 25 125 84 HOH HOH . M 7 HOH B 26 126 92 HOH HOH . M 7 HOH B 27 127 85 HOH HOH . N 7 HOH C 1 201 72 HOH HOH . N 7 HOH C 2 202 12 HOH HOH . N 7 HOH C 3 203 38 HOH HOH . N 7 HOH C 4 204 68 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -13.866 _atom_site.Cartn_y -50.554 _atom_site.Cartn_z -10.783 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 505 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #