data_8IL9 # _model_server_result.job_id Ix1gM97vQ6qTKgpt7FVeOg _model_server_result.datetime_utc '2024-10-10 05:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8il9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8IL9 # _exptl.entry_id 8IL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IL9 _cell.length_a 53.878 _cell.length_b 53.878 _cell.length_c 137.406 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 137.406 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 86 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 86 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 86 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 86 _struct_conn.ptnr2_symmetry 7_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.264 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8IL9 _atom_sites.fract_transf_matrix[1][1] 0.01856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 141 FMN FMN . C 3 HOH A 1 301 188 HOH HOH . C 3 HOH A 2 302 4 HOH HOH . C 3 HOH A 3 303 214 HOH HOH . C 3 HOH A 4 304 6 HOH HOH . C 3 HOH A 5 305 117 HOH HOH . C 3 HOH A 6 306 73 HOH HOH . C 3 HOH A 7 307 3 HOH HOH . C 3 HOH A 8 308 274 HOH HOH . C 3 HOH A 9 309 38 HOH HOH . C 3 HOH A 10 310 91 HOH HOH . C 3 HOH A 11 311 211 HOH HOH . C 3 HOH A 12 312 85 HOH HOH . C 3 HOH A 13 313 138 HOH HOH . C 3 HOH A 14 314 82 HOH HOH . C 3 HOH A 15 315 239 HOH HOH . C 3 HOH A 16 316 133 HOH HOH . C 3 HOH A 17 317 74 HOH HOH . C 3 HOH A 18 318 135 HOH HOH . C 3 HOH A 19 319 70 HOH HOH . C 3 HOH A 20 320 159 HOH HOH . C 3 HOH A 21 321 32 HOH HOH . C 3 HOH A 22 322 11 HOH HOH . C 3 HOH A 23 323 100 HOH HOH . C 3 HOH A 24 324 71 HOH HOH . C 3 HOH A 25 325 75 HOH HOH . C 3 HOH A 26 326 87 HOH HOH . C 3 HOH A 27 327 95 HOH HOH . C 3 HOH A 28 328 265 HOH HOH . C 3 HOH A 29 329 42 HOH HOH . C 3 HOH A 30 330 140 HOH HOH . C 3 HOH A 31 331 34 HOH HOH . C 3 HOH A 32 332 106 HOH HOH . C 3 HOH A 33 333 283 HOH HOH . C 3 HOH A 34 334 175 HOH HOH . C 3 HOH A 35 335 30 HOH HOH . C 3 HOH A 36 336 105 HOH HOH . C 3 HOH A 37 337 173 HOH HOH . C 3 HOH A 38 338 98 HOH HOH . C 3 HOH A 39 339 112 HOH HOH . C 3 HOH A 40 340 198 HOH HOH . C 3 HOH A 41 341 226 HOH HOH . C 3 HOH A 42 342 104 HOH HOH . C 3 HOH A 43 343 25 HOH HOH . C 3 HOH A 44 344 22 HOH HOH . C 3 HOH A 45 345 225 HOH HOH . C 3 HOH A 46 346 267 HOH HOH . C 3 HOH A 47 347 14 HOH HOH . C 3 HOH A 48 348 270 HOH HOH . C 3 HOH A 49 349 51 HOH HOH . C 3 HOH A 50 350 102 HOH HOH . C 3 HOH A 51 351 8 HOH HOH . C 3 HOH A 52 352 1 HOH HOH . C 3 HOH A 53 353 184 HOH HOH . C 3 HOH A 54 354 103 HOH HOH . C 3 HOH A 55 355 252 HOH HOH . C 3 HOH A 56 356 39 HOH HOH . C 3 HOH A 57 357 26 HOH HOH . C 3 HOH A 58 358 161 HOH HOH . C 3 HOH A 59 359 246 HOH HOH . C 3 HOH A 60 360 137 HOH HOH . C 3 HOH A 61 361 19 HOH HOH . C 3 HOH A 62 362 170 HOH HOH . C 3 HOH A 63 363 89 HOH HOH . C 3 HOH A 64 364 36 HOH HOH . C 3 HOH A 65 365 190 HOH HOH . C 3 HOH A 66 366 158 HOH HOH . C 3 HOH A 67 367 134 HOH HOH . C 3 HOH A 68 368 268 HOH HOH . C 3 HOH A 69 369 76 HOH HOH . C 3 HOH A 70 370 79 HOH HOH . C 3 HOH A 71 371 132 HOH HOH . C 3 HOH A 72 372 182 HOH HOH . C 3 HOH A 73 373 41 HOH HOH . C 3 HOH A 74 374 280 HOH HOH . C 3 HOH A 75 375 216 HOH HOH . C 3 HOH A 76 376 77 HOH HOH . C 3 HOH A 77 377 204 HOH HOH . C 3 HOH A 78 378 17 HOH HOH . C 3 HOH A 79 379 179 HOH HOH . C 3 HOH A 80 380 162 HOH HOH . C 3 HOH A 81 381 78 HOH HOH . C 3 HOH A 82 382 130 HOH HOH . C 3 HOH A 83 383 235 HOH HOH . C 3 HOH A 84 384 92 HOH HOH . C 3 HOH A 85 385 90 HOH HOH . C 3 HOH A 86 386 114 HOH HOH . C 3 HOH A 87 387 230 HOH HOH . C 3 HOH A 88 388 183 HOH HOH . C 3 HOH A 89 389 37 HOH HOH . C 3 HOH A 90 390 284 HOH HOH . C 3 HOH A 91 391 286 HOH HOH . C 3 HOH A 92 392 167 HOH HOH . C 3 HOH A 93 393 245 HOH HOH . C 3 HOH A 94 394 72 HOH HOH . C 3 HOH A 95 395 147 HOH HOH . C 3 HOH A 96 396 206 HOH HOH . C 3 HOH A 97 397 205 HOH HOH . C 3 HOH A 98 398 93 HOH HOH . C 3 HOH A 99 399 88 HOH HOH . C 3 HOH A 100 400 194 HOH HOH . C 3 HOH A 101 401 220 HOH HOH . C 3 HOH A 102 402 234 HOH HOH . C 3 HOH A 103 403 242 HOH HOH . C 3 HOH A 104 404 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 19.355 11.157 57.886 1 34.43 0 N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 18.282 11.695 57.257 1 39.21 0 C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 18.358 12.802 56.724 1 42.2 0 O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 17.071 11.072 57.253 1 37.66 0 N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 16.869 9.838 57.849 1 36.11 0 C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 15.748 9.319 57.82 1 33.35 0 O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 18.004 9.207 58.429 1 37.96 0 C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 17.875 8.013 58.953 1 41.12 0 N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 18.994 7.474 59.54 1 35.29 0 C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 18.902 6.202 60.144 1 35.4 0 C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 19.981 5.603 60.748 1 36.95 0 C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 19.826 4.233 61.378 1 44.37 0 C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 21.224 6.27 60.767 1 35.77 0 C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 22.447 5.637 61.392 1 36.63 0 C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 21.348 7.494 60.155 1 34.44 0 C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 20.239 8.134 59.563 1 35.04 0 C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 20.334 9.389 58.986 1 38.68 0 N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 19.234 9.962 58.408 1 36.88 0 C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 21.594 10.168 59.1 1 40.88 0 C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 22.598 10.004 57.987 1 41.41 0 C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 22.695 8.629 57.69 1 38.16 0 O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 23.96 10.574 58.42 1 37.78 0 C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 24.388 9.813 59.548 1 38.56 0 O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 23.957 12.071 58.756 1 39.98 0 C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 23.611 12.844 57.603 1 39.98 0 O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 25.243 12.591 59.355 1 36.95 0 C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 26.419 12.082 58.638 1 42.34 0 O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 27.042 12.941 57.404 1 51.14 0 P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 27.407 14.285 58.002 1 46.27 0 O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 28.197 12.114 56.931 1 49.75 0 O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 25.95 13.075 56.352 1 45.56 0 O3P FMN 201 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #