data_8ILA # _model_server_result.job_id sc8BOrN76bHVyGlnqZPrYw _model_server_result.datetime_utc '2025-01-12 15:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ila # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 8ILA # _exptl.entry_id 8ILA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.516 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-3-[2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-1~{H}-imidazol-5-yl]-2-(trimethyl-$l^{4}-azanyl)propanoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ILA _cell.length_a 122.382 _cell.length_b 137.739 _cell.length_c 146.101 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ILA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C17 H31 N4 O7 S 1' _chem_comp.formula_weight 435.516 _chem_comp.id Q3L _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-3-[2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-1~{H}-imidazol-5-yl]-2-(trimethyl-$l^{4}-azanyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 Q3L sing 322 n n O1 C1 Q3L sing 323 n n C1 C3 Q3L sing 324 n n C3 C4 Q3L sing 325 n n C3 N1 Q3L sing 326 n n C4 O2 Q3L sing 327 n n C4 C17 Q3L sing 328 n n O2 C5 Q3L sing 329 n n C17 C16 Q3L sing 330 n n C17 O7 Q3L sing 331 n n N2 C7 Q3L sing 332 n y N2 C6 Q3L doub 333 n y C5 S1 Q3L sing 334 n n C5 C15 Q3L sing 335 n n C7 C8 Q3L doub 336 n y C16 C15 Q3L sing 337 n n C16 O6 Q3L sing 338 n n C6 S1 Q3L sing 339 n n C6 N4 Q3L sing 340 n y C15 O5 Q3L sing 341 n n O3 C14 Q3L doub 342 n n C8 N4 Q3L sing 343 n y C8 C9 Q3L sing 344 n n C14 O4 Q3L sing 345 n n C14 C10 Q3L sing 346 n n C9 C10 Q3L sing 347 n n C11 N3 Q3L sing 348 n n C10 N3 Q3L sing 349 n n N3 C12 Q3L sing 350 n n N3 C13 Q3L sing 351 n n C16 H1 Q3L sing 352 n n N4 H2 Q3L sing 353 n n C3 H3 Q3L sing 354 n n C4 H5 Q3L sing 355 n n C5 H6 Q3L sing 356 n n C7 H7 Q3L sing 357 n n C9 H8 Q3L sing 358 n n C9 H9 Q3L sing 359 n n C1 H10 Q3L sing 360 n n N1 H11 Q3L sing 361 n n N1 H12 Q3L sing 362 n n C2 H14 Q3L sing 363 n n C2 H15 Q3L sing 364 n n C2 H16 Q3L sing 365 n n C17 H17 Q3L sing 366 n n C10 H18 Q3L sing 367 n n C15 H19 Q3L sing 368 n n C13 H20 Q3L sing 369 n n C13 H21 Q3L sing 370 n n C13 H22 Q3L sing 371 n n C12 H23 Q3L sing 372 n n C12 H24 Q3L sing 373 n n C12 H25 Q3L sing 374 n n C11 H26 Q3L sing 375 n n C11 H27 Q3L sing 376 n n C11 H28 Q3L sing 377 n n O1 H29 Q3L sing 378 n n O4 H30 Q3L sing 379 n n O5 H31 Q3L sing 380 n n O6 H32 Q3L sing 381 n n O7 H33 Q3L sing 382 n n # _atom_sites.entry_id 8ILA _atom_sites.fract_transf_matrix[1][1] 0.008171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GDP A 1 501 502 GDP GDP . F 3 Q3L A 1 502 503 Q3L L90 . G 2 GDP C 1 501 502 GDP GDP . H 3 Q3L C 1 502 503 Q3L L90 . I 2 GDP B 1 501 502 GDP GDP . J 3 Q3L B 1 502 503 Q3L L90 . K 2 GDP D 1 501 502 GDP GDP . L 3 Q3L D 1 502 503 Q3L L90 . M 4 HOH A 1 601 32 HOH HOH . M 4 HOH A 2 602 29 HOH HOH . M 4 HOH A 3 603 48 HOH HOH . M 4 HOH A 4 604 43 HOH HOH . M 4 HOH A 5 605 20 HOH HOH . M 4 HOH A 6 606 6 HOH HOH . M 4 HOH A 7 607 42 HOH HOH . M 4 HOH A 8 608 13 HOH HOH . M 4 HOH A 9 609 4 HOH HOH . M 4 HOH A 10 610 46 HOH HOH . M 4 HOH A 11 611 19 HOH HOH . M 4 HOH A 12 612 25 HOH HOH . M 4 HOH A 13 613 2 HOH HOH . M 4 HOH A 14 614 14 HOH HOH . M 4 HOH A 15 615 22 HOH HOH . M 4 HOH A 16 616 50 HOH HOH . M 4 HOH A 17 617 17 HOH HOH . M 4 HOH A 18 618 57 HOH HOH . M 4 HOH A 19 619 30 HOH HOH . N 4 HOH C 1 601 1 HOH HOH . N 4 HOH C 2 602 58 HOH HOH . N 4 HOH C 3 603 52 HOH HOH . N 4 HOH C 4 604 38 HOH HOH . N 4 HOH C 5 605 39 HOH HOH . N 4 HOH C 6 606 51 HOH HOH . N 4 HOH C 7 607 47 HOH HOH . N 4 HOH C 8 608 10 HOH HOH . N 4 HOH C 9 609 41 HOH HOH . N 4 HOH C 10 610 26 HOH HOH . N 4 HOH C 11 611 36 HOH HOH . N 4 HOH C 12 612 40 HOH HOH . N 4 HOH C 13 613 16 HOH HOH . N 4 HOH C 14 614 5 HOH HOH . N 4 HOH C 15 615 45 HOH HOH . N 4 HOH C 16 616 44 HOH HOH . N 4 HOH C 17 617 37 HOH HOH . N 4 HOH C 18 618 54 HOH HOH . O 4 HOH B 1 601 35 HOH HOH . O 4 HOH B 2 602 18 HOH HOH . O 4 HOH B 3 603 31 HOH HOH . O 4 HOH B 4 604 28 HOH HOH . O 4 HOH B 5 605 55 HOH HOH . O 4 HOH B 6 606 56 HOH HOH . O 4 HOH B 7 607 59 HOH HOH . P 4 HOH D 1 601 33 HOH HOH . P 4 HOH D 2 602 34 HOH HOH . P 4 HOH D 3 603 23 HOH HOH . P 4 HOH D 4 604 24 HOH HOH . P 4 HOH D 5 605 3 HOH HOH . P 4 HOH D 6 606 49 HOH HOH . P 4 HOH D 7 607 21 HOH HOH . P 4 HOH D 8 608 15 HOH HOH . P 4 HOH D 9 609 11 HOH HOH . P 4 HOH D 10 610 7 HOH HOH . P 4 HOH D 11 611 27 HOH HOH . P 4 HOH D 12 612 12 HOH HOH . P 4 HOH D 13 613 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 Q3L . . . L 3 48.291 35.738 45.568 0.82 60.11 ? O3 Q3L 502 D 1 HETATM 2 C C16 Q3L . . . L 3 44.686 39.546 51.745 0.68 59.05 ? C16 Q3L 502 D 1 HETATM 3 N N4 Q3L . . . L 3 44.425 35.351 47.349 0.7 59.37 ? N4 Q3L 502 D 1 HETATM 4 C C3 Q3L . . . L 3 43.051 37.726 54.664 1 58.33 ? C3 Q3L 502 D 1 HETATM 5 N N2 Q3L . . . L 3 45.887 35.173 48.923 0.46 59.27 ? N2 Q3L 502 D 1 HETATM 6 C C4 Q3L . . . L 3 43.85 37.963 53.485 1 58.21 ? C4 Q3L 502 D 1 HETATM 7 C C5 Q3L . . . L 3 44.249 37.192 51.131 1 58.43 ? C5 Q3L 502 D 1 HETATM 8 N N3 Q3L . . . L 3 46.606 35.172 43.112 0.21 59.55 ? N3 Q3L 502 D 1 HETATM 9 C C6 Q3L . . . L 3 44.653 35.553 48.637 1 59.26 ? C6 Q3L 502 D 1 HETATM 10 C C7 Q3L . . . L 3 46.453 34.732 47.809 1 59.18 ? C7 Q3L 502 D 1 HETATM 11 C C8 Q3L . . . L 3 45.513 34.845 46.789 0.17 59.37 ? C8 Q3L 502 D 1 HETATM 12 C C9 Q3L . . . L 3 45.688 34.461 45.303 1 59.46 ? C9 Q3L 502 D 1 HETATM 13 C C1 Q3L . . . L 3 43.756 38.253 55.961 0.96 58.64 ? C1 Q3L 502 D 1 HETATM 14 N N1 Q3L . . . L 3 41.682 38.303 54.572 0.49 59.14 ? N1 Q3L 502 D 1 HETATM 15 C C2 Q3L . . . L 3 43.612 37.242 57.115 0.5 58.73 ? C2 Q3L 502 D 1 HETATM 16 C C17 Q3L . . . L 3 43.774 39.41 52.909 1 58.91 ? C17 Q3L 502 D 1 HETATM 17 O O2 Q3L . . . L 3 43.442 37.02 52.355 0.46 58.6 ? O2 Q3L 502 D 1 HETATM 18 C C10 Q3L . . . L 3 46.159 35.638 44.438 0.87 59.49 ? C10 Q3L 502 D 1 HETATM 19 C C15 Q3L . . . L 3 44.351 38.616 50.683 0.63 58.66 ? C15 Q3L 502 D 1 HETATM 20 C C14 Q3L . . . L 3 47.288 36.372 45.135 0.79 60.06 ? C14 Q3L 502 D 1 HETATM 21 C C13 Q3L . . . L 3 45.452 34.912 42.229 1 59.02 ? C13 Q3L 502 D 1 HETATM 22 C C12 Q3L . . . L 3 47.291 33.868 43.319 1 59.64 ? C12 Q3L 502 D 1 HETATM 23 C C11 Q3L . . . L 3 47.362 36.289 42.488 0.92 61.51 ? C11 Q3L 502 D 1 HETATM 24 O O1 Q3L . . . L 3 45.192 38.518 55.703 0.92 59.16 ? O1 Q3L 502 D 1 HETATM 25 O O4 Q3L . . . L 3 47.213 37.621 45.283 0.58 60.42 ? O4 Q3L 502 D 1 HETATM 26 O O5 Q3L . . . L 3 45.383 38.712 49.62 0.8 59.06 ? O5 Q3L 502 D 1 HETATM 27 O O6 Q3L . . . L 3 44.551 40.922 51.206 0.88 60.24 ? O6 Q3L 502 D 1 HETATM 28 O O7 Q3L . . . L 3 42.464 39.673 52.407 0.44 59.81 ? O7 Q3L 502 D 1 HETATM 29 S S1 Q3L . . . L 3 43.443 36.232 49.817 0.55 59.81 ? S1 Q3L 502 D 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #