data_8IM2 # _model_server_result.job_id S4crfOgzV_pp1Wff-RRiqw _model_server_result.datetime_utc '2024-10-22 13:44:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8im2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":502}' # _entry.id 8IM2 # _exptl.entry_id 8IM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.228 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.12 _cell.angle_gamma 90 _cell.entry_id 8IM2 _cell.length_a 121.55 _cell.length_b 147.442 _cell.length_c 133.93 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G,H,I,S,T,U,Y,CA 1 1 B,F,J,K,L,V,W,X,Z 2 1 C,D,M,N,O,P,Q,R,AA,BA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 N N N ? 3 R N N ? 3 T N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 183 A HIS 183 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 A NE2 HIS 266 A HIS 266 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc3 A OE1 GLU 349 A GLU 349 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 G CO CO . A CO 401 1_555 H O5 NTD . A NTD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc5 G CO CO . A CO 401 1_555 H O7 NTD . A NTD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc6 G CO CO . A CO 401 1_555 Y O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc7 B NE2 HIS 183 B HIS 183 1_555 J CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc8 B OE2 GLU 349 B GLU 349 1_555 J CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc9 J CO CO . B CO 501 1_555 K O7 NTD . B NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc10 J CO CO . B CO 501 1_555 K O5 NTD . B NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc11 C NE2 HIS 183 C HIS 183 1_555 M CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc12 C OE1 GLU 349 C GLU 349 1_555 M CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc13 M CO CO . C CO 401 1_555 N O5 NTD . C NTD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc14 M CO CO . C CO 401 1_555 N O7 NTD . C NTD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc15 D NE2 HIS 183 D HIS 183 1_555 Q CO CO . D CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc16 D NE2 HIS 266 D HIS 266 1_555 Q CO CO . D CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc17 D OE1 GLU 349 D GLU 349 1_555 Q CO CO . D CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc18 Q CO CO . D CO 402 1_555 R O5 NTD . D NTD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc19 Q CO CO . D CO 402 1_555 R O7 NTD . D NTD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc20 E NE2 HIS 183 E HIS 183 1_555 S CO CO . E CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc21 E NE2 HIS 266 E HIS 266 1_555 S CO CO . E CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc22 E OE2 GLU 349 E GLU 349 1_555 S CO CO . E CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc23 S CO CO . E CO 401 1_555 T O5 NTD . E NTD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc24 S CO CO . E CO 401 1_555 T O7 NTD . E NTD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc25 S CO CO . E CO 401 1_555 CA O HOH . E HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc26 F NE2 HIS 183 F HIS 183 1_555 V CO CO . F CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc27 F NE2 HIS 266 F HIS 266 1_555 V CO CO . F CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc28 F OE2 GLU 349 F GLU 349 1_555 V CO CO . F CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? metalc ? metalc29 V CO CO . F CO 401 1_555 W O7 NTD . F NTD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc30 V CO CO . F CO 401 1_555 W O5 NTD . F NTD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C14 H10 F3 N O5' _chem_comp.formula_weight 329.228 _chem_comp.id NTD _chem_comp.mon_nstd_flag . _chem_comp.name 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C5 NTD doub 258 n n C5 C2 NTD sing 259 n n C5 C6 NTD sing 260 n n C2 C3 NTD sing 261 n n C2 H21 NTD sing 262 n n C2 H22 NTD sing 263 n n C3 C4 NTD sing 264 n n C3 H31 NTD sing 265 n n C3 H32 NTD sing 266 n n C4 C1 NTD sing 267 n n C4 H41 NTD sing 268 n n C4 H42 NTD sing 269 n n C1 O5 NTD doub 270 n n C1 C6 NTD sing 271 n n C6 C7 NTD doub 272 n n C7 O7 NTD sing 273 n n C7 C8 NTD sing 274 n n O7 HO7 NTD sing 275 n n C8 C13 NTD doub 276 n y C8 C9 NTD sing 277 n y C13 C12 NTD sing 278 n y C13 H13 NTD sing 279 n n C12 C11 NTD doub 280 n y C12 H12 NTD sing 281 n n C11 C14 NTD sing 282 n n C11 C10 NTD sing 283 n y C14 F2 NTD sing 284 n n C14 F3 NTD sing 285 n n C14 F1 NTD sing 286 n n C10 C9 NTD doub 287 n y C10 H10 NTD sing 288 n n C9 N NTD sing 289 n n N ON2 NTD doub 290 n n N ON1 NTD sing 291 n n # _atom_sites.entry_id 8IM2 _atom_sites.fract_transf_matrix[1][1] 0.008227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CO A 1 401 500 CO CO . H 3 NTD A 1 402 503 NTD NTB . I 4 MPD A 1 403 601 MPD BBB . J 2 CO B 1 501 501 CO CO . K 3 NTD B 1 502 505 NTD NTB . L 4 MPD B 1 503 602 MPD BBB . M 2 CO C 1 401 502 CO CO . N 3 NTD C 1 402 504 NTD NTB . O 4 MPD C 1 403 603 MPD BBB . P 4 MPD D 1 401 604 MPD BBB . Q 2 CO D 1 402 503 CO CO . R 3 NTD D 1 403 502 NTD NTB . S 2 CO E 1 401 504 CO CO . T 3 NTD E 1 402 501 NTD NTB . U 4 MPD E 1 403 605 MPD BBB . V 2 CO F 1 401 505 CO CO . W 3 NTD F 1 402 506 NTD NTB . X 4 MPD F 1 403 606 MPD BBB . Y 5 HOH A 1 501 29 HOH HOH . Y 5 HOH A 2 502 38 HOH HOH . Y 5 HOH A 3 503 4 HOH HOH . Y 5 HOH A 4 504 119 HOH HOH . Y 5 HOH A 5 505 9 HOH HOH . Y 5 HOH A 6 506 23 HOH HOH . Y 5 HOH A 7 507 39 HOH HOH . Y 5 HOH A 8 508 30 HOH HOH . Y 5 HOH A 9 509 22 HOH HOH . Y 5 HOH A 10 510 5 HOH HOH . Y 5 HOH A 11 511 15 HOH HOH . Y 5 HOH A 12 512 17 HOH HOH . Y 5 HOH A 13 513 13 HOH HOH . Y 5 HOH A 14 514 43 HOH HOH . Y 5 HOH A 15 515 3 HOH HOH . Y 5 HOH A 16 516 8 HOH HOH . Y 5 HOH A 17 517 12 HOH HOH . Y 5 HOH A 18 518 34 HOH HOH . Y 5 HOH A 19 519 10 HOH HOH . Y 5 HOH A 20 520 27 HOH HOH . Y 5 HOH A 21 521 36 HOH HOH . Y 5 HOH A 22 522 20 HOH HOH . Y 5 HOH A 23 523 21 HOH HOH . Y 5 HOH A 24 524 1 HOH HOH . Y 5 HOH A 25 525 6 HOH HOH . Y 5 HOH A 26 526 31 HOH HOH . Y 5 HOH A 27 527 7 HOH HOH . Y 5 HOH A 28 528 37 HOH HOH . Y 5 HOH A 29 529 40 HOH HOH . Y 5 HOH A 30 530 33 HOH HOH . Y 5 HOH A 31 531 35 HOH HOH . Y 5 HOH A 32 532 16 HOH HOH . Y 5 HOH A 33 533 2 HOH HOH . Z 5 HOH B 1 601 48 HOH HOH . Z 5 HOH B 2 602 45 HOH HOH . Z 5 HOH B 3 603 47 HOH HOH . Z 5 HOH B 4 604 49 HOH HOH . AA 5 HOH C 1 501 56 HOH HOH . AA 5 HOH C 2 502 58 HOH HOH . AA 5 HOH C 3 503 59 HOH HOH . AA 5 HOH C 4 504 60 HOH HOH . AA 5 HOH C 5 505 61 HOH HOH . AA 5 HOH C 6 506 57 HOH HOH . BA 5 HOH D 1 501 70 HOH HOH . BA 5 HOH D 2 502 66 HOH HOH . BA 5 HOH D 3 503 65 HOH HOH . BA 5 HOH D 4 504 68 HOH HOH . BA 5 HOH D 5 505 72 HOH HOH . BA 5 HOH D 6 506 71 HOH HOH . BA 5 HOH D 7 507 67 HOH HOH . BA 5 HOH D 8 508 69 HOH HOH . CA 5 HOH E 1 501 101 HOH HOH . CA 5 HOH E 2 502 78 HOH HOH . CA 5 HOH E 3 503 90 HOH HOH . CA 5 HOH E 4 504 18 HOH HOH . CA 5 HOH E 5 505 19 HOH HOH . CA 5 HOH E 6 506 28 HOH HOH . CA 5 HOH E 7 507 92 HOH HOH . CA 5 HOH E 8 508 89 HOH HOH . CA 5 HOH E 9 509 100 HOH HOH . CA 5 HOH E 10 510 41 HOH HOH . CA 5 HOH E 11 511 14 HOH HOH . CA 5 HOH E 12 512 25 HOH HOH . CA 5 HOH E 13 513 96 HOH HOH . CA 5 HOH E 14 514 80 HOH HOH . CA 5 HOH E 15 515 93 HOH HOH . CA 5 HOH E 16 516 82 HOH HOH . CA 5 HOH E 17 517 84 HOH HOH . CA 5 HOH E 18 518 77 HOH HOH . CA 5 HOH E 19 519 79 HOH HOH . CA 5 HOH E 20 520 91 HOH HOH . CA 5 HOH E 21 521 11 HOH HOH . CA 5 HOH E 22 522 75 HOH HOH . CA 5 HOH E 23 523 42 HOH HOH . CA 5 HOH E 24 524 95 HOH HOH . CA 5 HOH E 25 525 94 HOH HOH . CA 5 HOH E 26 526 99 HOH HOH . CA 5 HOH E 27 527 81 HOH HOH . CA 5 HOH E 28 528 97 HOH HOH . CA 5 HOH E 29 529 85 HOH HOH . CA 5 HOH E 30 530 76 HOH HOH . CA 5 HOH E 31 531 26 HOH HOH . CA 5 HOH E 32 532 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 NTD . . . K 3 96.573 -6.954 292.726 1 57.01 ? O1 NTD 502 B 1 HETATM 2 C C5 NTD . . . K 3 96.582 -7.655 293.947 1 56.21 ? C5 NTD 502 B 1 HETATM 3 C C2 NTD . . . K 3 98.03 -8.11 294.183 1 48.66 ? C2 NTD 502 B 1 HETATM 4 C C3 NTD . . . K 3 98.172 -9.065 295.372 1 56.8 ? C3 NTD 502 B 1 HETATM 5 C C4 NTD . . . K 3 97.173 -10.223 295.287 1 59 ? C4 NTD 502 B 1 HETATM 6 C C1 NTD . . . K 3 95.742 -9.696 295.159 1 56.31 ? C1 NTD 502 B 1 HETATM 7 O O5 NTD . . . K 3 94.845 -10.779 295.098 1 59.29 ? O5 NTD 502 B 1 HETATM 8 C C6 NTD . . . K 3 95.581 -8.828 293.911 1 58.97 ? C6 NTD 502 B 1 HETATM 9 C C7 NTD . . . K 3 94.114 -8.353 293.881 1 53.51 ? C7 NTD 502 B 1 HETATM 10 O O7 NTD . . . K 3 93.257 -9.455 293.928 1 51.36 ? O7 NTD 502 B 1 HETATM 11 C C8 NTD . . . K 3 93.8 -7.548 292.627 1 58.23 ? C8 NTD 502 B 1 HETATM 12 C C13 NTD . . . K 3 93.772 -8.138 291.375 1 59.54 ? C13 NTD 502 B 1 HETATM 13 C C12 NTD . . . K 3 93.482 -7.371 290.259 1 59.2 ? C12 NTD 502 B 1 HETATM 14 C C11 NTD . . . K 3 93.224 -6.016 290.395 1 59.61 ? C11 NTD 502 B 1 HETATM 15 C C14 NTD . . . K 3 92.907 -5.174 289.16 1 67.17 ? C14 NTD 502 B 1 HETATM 16 F F2 NTD . . . K 3 94.05 -4.977 288.442 1 71.14 ? F2 NTD 502 B 1 HETATM 17 F F3 NTD . . . K 3 91.993 -5.823 288.381 1 62.61 ? F3 NTD 502 B 1 HETATM 18 F F1 NTD . . . K 3 92.4 -3.967 289.552 1 67.12 ? F1 NTD 502 B 1 HETATM 19 C C10 NTD . . . K 3 93.256 -5.428 291.649 1 57.67 ? C10 NTD 502 B 1 HETATM 20 C C9 NTD . . . K 3 93.544 -6.199 292.763 1 58.8 ? C9 NTD 502 B 1 HETATM 21 N N NTD . . . K 3 93.586 -5.624 294.093 1 63.75 ? N NTD 502 B 1 HETATM 22 O ON2 NTD . . . K 3 94.799 -5.147 294.625 1 64.67 ? ON2 NTD 502 B 1 HETATM 23 O ON1 NTD . . . K 3 92.408 -5.55 294.853 1 60.96 -1 ON1 NTD 502 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 35 _model_server_stats.element_count 23 #