data_8IM3 # _model_server_result.job_id CRqXphUEGMJLJIvxatHsiw _model_server_result.datetime_utc '2024-10-22 15:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8im3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 8IM3 # _exptl.entry_id 8IM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 97.27 _cell.angle_beta 110.71 _cell.angle_gamma 110.29 _cell.entry_id 8IM3 _cell.length_a 81.03 _cell.length_b 88.895 _cell.length_c 94.279 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,S 1 1 C,K,L,U 1 2 B,I,J,T 2 1 D,M,N,V 2 3 F,Q,R,X 3 1 E,O,P,W 3 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -33.340647 -25.046295 84.555391 3 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 -30.826293 83.379018 0 4 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 81.03 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 183 A HIS 183 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc2 A NE2 HIS 266 A HIS 266 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc3 A OE2 GLU 349 A GLU 349 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc4 G CO CO . A CO 401 1_555 H O17 92U . A 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 G CO CO . A CO 401 1_555 H O12 92U . A 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc6 B NE2 HIS 183 B HIS 183 1_555 I CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 B NE2 HIS 266 B HIS 266 1_555 I CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc8 B OE2 GLU 349 B GLU 349 1_555 I CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc9 I CO CO . B CO 401 1_555 J O12 92U . B 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc10 I CO CO . B CO 401 1_555 J O17 92U . B 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc11 C NE2 HIS 183 C HIS 183 1_555 K CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc12 C NE2 HIS 266 C HIS 266 1_555 K CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc13 C OE1 GLU 349 C GLU 349 1_555 K CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc14 K CO CO . C CO 401 1_555 L O12 92U . C 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc15 K CO CO . C CO 401 1_555 L O17 92U . C 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc16 D NE2 HIS 183 D HIS 183 1_555 M CO CO . D CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc17 D OE1 GLU 349 D GLU 349 1_555 M CO CO . D CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc18 M CO CO . D CO 401 1_555 N O12 92U . D 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc19 E NE2 HIS 183 E HIS 183 1_555 O CO CO . E CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc20 E OE1 GLU 349 E GLU 349 1_555 O CO CO . E CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc21 O CO CO . E CO 401 1_555 P O12 92U . E 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc22 F OE2 GLU 349 F GLU 349 1_555 Q CO CO . F CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc23 Q CO CO . F CO 401 1_555 R O17 92U . F 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc24 Q CO CO . F CO 401 1_555 R O12 92U . F 92U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8IM3 _atom_sites.fract_transf_matrix[1][1] 0.012341 _atom_sites.fract_transf_matrix[1][2] 0.004562 _atom_sites.fract_transf_matrix[1][3] 0.006218 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011993 _atom_sites.fract_transf_matrix[2][3] 0.003553 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CO A 1 401 1 CO CO . H 3 92U A 1 402 401 92U LIG . I 2 CO B 1 401 2 CO CO . J 3 92U B 1 402 402 92U LIG . K 2 CO C 1 401 3 CO CO . L 3 92U C 1 402 403 92U LIG . M 2 CO D 1 401 4 CO CO . N 3 92U D 1 402 404 92U LIG . O 2 CO E 1 401 5 CO CO . P 3 92U E 1 402 405 92U LIG . Q 2 CO F 1 401 6 CO CO . R 3 92U F 1 402 406 92U LIG . S 4 HOH A 1 501 59 HOH HOH . S 4 HOH A 2 502 4 HOH HOH . S 4 HOH A 3 503 181 HOH HOH . S 4 HOH A 4 504 10 HOH HOH . S 4 HOH A 5 505 67 HOH HOH . S 4 HOH A 6 506 11 HOH HOH . S 4 HOH A 7 507 9 HOH HOH . S 4 HOH A 8 508 88 HOH HOH . S 4 HOH A 9 509 100 HOH HOH . S 4 HOH A 10 510 5 HOH HOH . S 4 HOH A 11 511 70 HOH HOH . S 4 HOH A 12 512 57 HOH HOH . S 4 HOH A 13 513 7 HOH HOH . S 4 HOH A 14 514 51 HOH HOH . S 4 HOH A 15 515 52 HOH HOH . S 4 HOH A 16 516 102 HOH HOH . S 4 HOH A 17 517 129 HOH HOH . S 4 HOH A 18 518 84 HOH HOH . S 4 HOH A 19 519 168 HOH HOH . S 4 HOH A 20 520 56 HOH HOH . S 4 HOH A 21 521 69 HOH HOH . S 4 HOH A 22 522 1 HOH HOH . S 4 HOH A 23 523 161 HOH HOH . S 4 HOH A 24 524 138 HOH HOH . S 4 HOH A 25 525 177 HOH HOH . S 4 HOH A 26 526 172 HOH HOH . S 4 HOH A 27 527 127 HOH HOH . S 4 HOH A 28 528 120 HOH HOH . S 4 HOH A 29 529 115 HOH HOH . S 4 HOH A 30 530 166 HOH HOH . S 4 HOH A 31 531 160 HOH HOH . S 4 HOH A 32 532 99 HOH HOH . S 4 HOH A 33 533 162 HOH HOH . S 4 HOH A 34 534 189 HOH HOH . T 4 HOH B 1 501 92 HOH HOH . T 4 HOH B 2 502 130 HOH HOH . T 4 HOH B 3 503 86 HOH HOH . T 4 HOH B 4 504 53 HOH HOH . T 4 HOH B 5 505 18 HOH HOH . T 4 HOH B 6 506 19 HOH HOH . T 4 HOH B 7 507 123 HOH HOH . T 4 HOH B 8 508 176 HOH HOH . T 4 HOH B 9 509 90 HOH HOH . T 4 HOH B 10 510 174 HOH HOH . T 4 HOH B 11 511 50 HOH HOH . T 4 HOH B 12 512 71 HOH HOH . T 4 HOH B 13 513 63 HOH HOH . T 4 HOH B 14 514 131 HOH HOH . T 4 HOH B 15 515 122 HOH HOH . T 4 HOH B 16 516 140 HOH HOH . T 4 HOH B 17 517 81 HOH HOH . T 4 HOH B 18 518 16 HOH HOH . T 4 HOH B 19 519 158 HOH HOH . T 4 HOH B 20 520 15 HOH HOH . T 4 HOH B 21 521 184 HOH HOH . T 4 HOH B 22 522 82 HOH HOH . T 4 HOH B 23 523 157 HOH HOH . T 4 HOH B 24 524 171 HOH HOH . T 4 HOH B 25 525 111 HOH HOH . T 4 HOH B 26 526 179 HOH HOH . T 4 HOH B 27 527 153 HOH HOH . T 4 HOH B 28 528 14 HOH HOH . T 4 HOH B 29 529 60 HOH HOH . T 4 HOH B 30 530 190 HOH HOH . T 4 HOH B 31 531 79 HOH HOH . T 4 HOH B 32 532 147 HOH HOH . U 4 HOH C 1 501 66 HOH HOH . U 4 HOH C 2 502 169 HOH HOH . U 4 HOH C 3 503 116 HOH HOH . U 4 HOH C 4 504 185 HOH HOH . U 4 HOH C 5 505 98 HOH HOH . U 4 HOH C 6 506 65 HOH HOH . U 4 HOH C 7 507 155 HOH HOH . U 4 HOH C 8 508 29 HOH HOH . U 4 HOH C 9 509 21 HOH HOH . U 4 HOH C 10 510 28 HOH HOH . U 4 HOH C 11 511 26 HOH HOH . U 4 HOH C 12 512 186 HOH HOH . U 4 HOH C 13 513 144 HOH HOH . U 4 HOH C 14 514 139 HOH HOH . U 4 HOH C 15 515 77 HOH HOH . U 4 HOH C 16 516 150 HOH HOH . U 4 HOH C 17 517 27 HOH HOH . U 4 HOH C 18 518 64 HOH HOH . U 4 HOH C 19 519 32 HOH HOH . U 4 HOH C 20 520 20 HOH HOH . U 4 HOH C 21 521 74 HOH HOH . U 4 HOH C 22 522 142 HOH HOH . U 4 HOH C 23 523 25 HOH HOH . U 4 HOH C 24 524 68 HOH HOH . U 4 HOH C 25 525 31 HOH HOH . U 4 HOH C 26 526 76 HOH HOH . U 4 HOH C 27 527 156 HOH HOH . U 4 HOH C 28 528 94 HOH HOH . U 4 HOH C 29 529 23 HOH HOH . U 4 HOH C 30 530 107 HOH HOH . U 4 HOH C 31 531 183 HOH HOH . U 4 HOH C 32 532 163 HOH HOH . V 4 HOH D 1 501 49 HOH HOH . V 4 HOH D 2 502 34 HOH HOH . V 4 HOH D 3 503 178 HOH HOH . V 4 HOH D 4 504 33 HOH HOH . V 4 HOH D 5 505 35 HOH HOH . V 4 HOH D 6 506 95 HOH HOH . V 4 HOH D 7 507 119 HOH HOH . V 4 HOH D 8 508 36 HOH HOH . V 4 HOH D 9 509 39 HOH HOH . V 4 HOH D 10 510 175 HOH HOH . V 4 HOH D 11 511 124 HOH HOH . V 4 HOH D 12 512 112 HOH HOH . V 4 HOH D 13 513 78 HOH HOH . V 4 HOH D 14 514 109 HOH HOH . V 4 HOH D 15 515 110 HOH HOH . V 4 HOH D 16 516 13 HOH HOH . V 4 HOH D 17 517 133 HOH HOH . V 4 HOH D 18 518 134 HOH HOH . V 4 HOH D 19 519 117 HOH HOH . V 4 HOH D 20 520 128 HOH HOH . V 4 HOH D 21 521 38 HOH HOH . V 4 HOH D 22 522 37 HOH HOH . V 4 HOH D 23 523 141 HOH HOH . V 4 HOH D 24 524 165 HOH HOH . W 4 HOH E 1 501 45 HOH HOH . W 4 HOH E 2 502 40 HOH HOH . W 4 HOH E 3 503 148 HOH HOH . W 4 HOH E 4 504 41 HOH HOH . W 4 HOH E 5 505 126 HOH HOH . W 4 HOH E 6 506 42 HOH HOH . W 4 HOH E 7 507 106 HOH HOH . W 4 HOH E 8 508 91 HOH HOH . W 4 HOH E 9 509 43 HOH HOH . W 4 HOH E 10 510 145 HOH HOH . W 4 HOH E 11 511 105 HOH HOH . W 4 HOH E 12 512 113 HOH HOH . W 4 HOH E 13 513 159 HOH HOH . W 4 HOH E 14 514 170 HOH HOH . W 4 HOH E 15 515 154 HOH HOH . X 4 HOH F 1 501 47 HOH HOH . X 4 HOH F 2 502 149 HOH HOH . X 4 HOH F 3 503 54 HOH HOH . X 4 HOH F 4 504 101 HOH HOH . X 4 HOH F 5 505 89 HOH HOH . X 4 HOH F 6 506 104 HOH HOH . X 4 HOH F 7 507 125 HOH HOH . X 4 HOH F 8 508 72 HOH HOH . X 4 HOH F 9 509 87 HOH HOH . X 4 HOH F 10 510 132 HOH HOH . X 4 HOH F 11 511 48 HOH HOH . X 4 HOH F 12 512 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.957 _atom_site.Cartn_y 14.676 _atom_site.Cartn_z 43.006 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 401 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 1 #