data_8IM6
#
_model_server_result.job_id            eUGzfqQii91xNbV_TXmQJw 
_model_server_result.datetime_utc      '2024-11-23 10:13:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8im6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    8IM6 
#
_exptl.entry_id    8IM6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              552.514 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.959 
_cell.angle_gamma         90 
_cell.entry_id            8IM6 
_cell.length_a            53.522 
_cell.length_b            77.012 
_cell.length_c            74.626 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IM6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H33 N4 O9 P' 
_chem_comp.formula_weight    552.514 
_chem_comp.id                80I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N22 C23 80I sing 1 n n 
N22 C21 80I sing 2 n n 
C23 C24 80I sing 3 n n 
C21 O25 80I doub 4 n n 
C21 C20 80I sing 5 n n 
C24 C20 80I sing 6 n n 
C20 C19 80I sing 7 n n 
C08 C09 80I doub 8 n y 
C08 C07 80I sing 9 n y 
C09 C10 80I sing 10 n y 
C19 C18 80I sing 11 n n 
C07 N04 80I sing 12 n y 
C07 C06 80I doub 13 n y 
C10 C11 80I doub 14 n y 
N04 C03 80I sing 15 n y 
O31 P29 80I doub 16 n n 
C18 C26 80I sing 17 n n 
C18 N17 80I sing 18 n n 
O32 P29 80I sing 19 n n 
C06 C11 80I sing 20 n y 
C06 C05 80I sing 21 n y 
C11 O12 80I sing 22 n n 
O33 C26 80I doub 23 n n 
O01 C02 80I doub 24 n n 
C03 C02 80I sing 25 n n 
C03 C05 80I doub 26 n y 
C26 C27 80I sing 27 n n 
C02 N14 80I sing 28 n n 
P29 O28 80I sing 29 n n 
P29 O30 80I sing 30 n n 
O34 C16 80I doub 31 n n 
N17 C16 80I sing 32 n n 
O12 C13 80I sing 33 n n 
C16 C15 80I sing 34 n n 
O28 C27 80I sing 35 n n 
N14 C15 80I sing 36 n n 
C15 C35 80I sing 37 n n 
C35 C36 80I sing 38 n n 
C36 C38 80I sing 39 n n 
C36 C37 80I sing 40 n n 
C10 H1 80I sing 41 n n 
C13 H2 80I sing 42 n n 
C13 H3 80I sing 43 n n 
C13 H4 80I sing 44 n n 
C15 H5 80I sing 45 n n 
C20 H6 80I sing 46 n n 
C24 H7 80I sing 47 n n 
C24 H8 80I sing 48 n n 
C05 H9 80I sing 49 n n 
C08 H10 80I sing 50 n n 
C09 H11 80I sing 51 n n 
C18 H12 80I sing 52 n n 
C19 H13 80I sing 53 n n 
C19 H14 80I sing 54 n n 
C23 H15 80I sing 55 n n 
C27 H16 80I sing 56 n n 
C27 H17 80I sing 57 n n 
C35 H18 80I sing 58 n n 
C35 H19 80I sing 59 n n 
C36 H20 80I sing 60 n n 
C37 H21 80I sing 61 n n 
C37 H22 80I sing 62 n n 
C37 H23 80I sing 63 n n 
C38 H24 80I sing 64 n n 
C38 H25 80I sing 65 n n 
C38 H26 80I sing 66 n n 
N04 H27 80I sing 67 n n 
N14 H28 80I sing 68 n n 
N17 H29 80I sing 69 n n 
O30 H30 80I sing 70 n n 
O32 H31 80I sing 71 n n 
N22 H32 80I sing 72 n n 
C23 H33 80I sing 73 n n 
#
_atom_sites.entry_id                     8IM6 
_atom_sites.fract_transf_matrix[1][1]    0.018684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003957 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012985 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013697 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 80I A 1 401 2 80I LIG . 
D 2 80I B 1 401 1 80I LIG . 
E 3 HOH A 1 501 54 HOH HOH . 
E 3 HOH A 2 502 92 HOH HOH . 
E 3 HOH A 3 503 95 HOH HOH . 
E 3 HOH A 4 504 36 HOH HOH . 
E 3 HOH A 5 505 102 HOH HOH . 
E 3 HOH A 6 506 80 HOH HOH . 
E 3 HOH A 7 507 1 HOH HOH . 
E 3 HOH A 8 508 65 HOH HOH . 
E 3 HOH A 9 509 32 HOH HOH . 
E 3 HOH A 10 510 73 HOH HOH . 
E 3 HOH A 11 511 52 HOH HOH . 
E 3 HOH A 12 512 29 HOH HOH . 
E 3 HOH A 13 513 83 HOH HOH . 
E 3 HOH A 14 514 110 HOH HOH . 
E 3 HOH A 15 515 88 HOH HOH . 
E 3 HOH A 16 516 44 HOH HOH . 
E 3 HOH A 17 517 26 HOH HOH . 
E 3 HOH A 18 518 60 HOH HOH . 
E 3 HOH A 19 519 53 HOH HOH . 
E 3 HOH A 20 520 40 HOH HOH . 
E 3 HOH A 21 521 30 HOH HOH . 
E 3 HOH A 22 522 15 HOH HOH . 
E 3 HOH A 23 523 96 HOH HOH . 
E 3 HOH A 24 524 39 HOH HOH . 
E 3 HOH A 25 525 68 HOH HOH . 
E 3 HOH A 26 526 98 HOH HOH . 
E 3 HOH A 27 527 143 HOH HOH . 
E 3 HOH A 28 528 105 HOH HOH . 
E 3 HOH A 29 529 4 HOH HOH . 
E 3 HOH A 30 530 21 HOH HOH . 
E 3 HOH A 31 531 19 HOH HOH . 
E 3 HOH A 32 532 131 HOH HOH . 
E 3 HOH A 33 533 5 HOH HOH . 
E 3 HOH A 34 534 49 HOH HOH . 
E 3 HOH A 35 535 75 HOH HOH . 
E 3 HOH A 36 536 34 HOH HOH . 
E 3 HOH A 37 537 86 HOH HOH . 
E 3 HOH A 38 538 37 HOH HOH . 
E 3 HOH A 39 539 11 HOH HOH . 
E 3 HOH A 40 540 152 HOH HOH . 
E 3 HOH A 41 541 24 HOH HOH . 
E 3 HOH A 42 542 151 HOH HOH . 
E 3 HOH A 43 543 3 HOH HOH . 
E 3 HOH A 44 544 22 HOH HOH . 
E 3 HOH A 45 545 50 HOH HOH . 
E 3 HOH A 46 546 71 HOH HOH . 
E 3 HOH A 47 547 153 HOH HOH . 
E 3 HOH A 48 548 67 HOH HOH . 
E 3 HOH A 49 549 141 HOH HOH . 
E 3 HOH A 50 550 101 HOH HOH . 
E 3 HOH A 51 551 94 HOH HOH . 
E 3 HOH A 52 552 144 HOH HOH . 
E 3 HOH A 53 553 38 HOH HOH . 
E 3 HOH A 54 554 135 HOH HOH . 
E 3 HOH A 55 555 132 HOH HOH . 
E 3 HOH A 56 556 78 HOH HOH . 
E 3 HOH A 57 557 35 HOH HOH . 
E 3 HOH A 58 558 129 HOH HOH . 
E 3 HOH A 59 559 28 HOH HOH . 
E 3 HOH A 60 560 115 HOH HOH . 
E 3 HOH A 61 561 148 HOH HOH . 
E 3 HOH A 62 562 106 HOH HOH . 
E 3 HOH A 63 563 81 HOH HOH . 
E 3 HOH A 64 564 125 HOH HOH . 
E 3 HOH A 65 565 145 HOH HOH . 
E 3 HOH A 66 566 46 HOH HOH . 
E 3 HOH A 67 567 149 HOH HOH . 
E 3 HOH A 68 568 72 HOH HOH . 
E 3 HOH A 69 569 150 HOH HOH . 
E 3 HOH A 70 570 128 HOH HOH . 
E 3 HOH A 71 571 77 HOH HOH . 
E 3 HOH A 72 572 76 HOH HOH . 
F 3 HOH B 1 501 79 HOH HOH . 
F 3 HOH B 2 502 14 HOH HOH . 
F 3 HOH B 3 503 82 HOH HOH . 
F 3 HOH B 4 504 17 HOH HOH . 
F 3 HOH B 5 505 13 HOH HOH . 
F 3 HOH B 6 506 121 HOH HOH . 
F 3 HOH B 7 507 42 HOH HOH . 
F 3 HOH B 8 508 12 HOH HOH . 
F 3 HOH B 9 509 66 HOH HOH . 
F 3 HOH B 10 510 107 HOH HOH . 
F 3 HOH B 11 511 20 HOH HOH . 
F 3 HOH B 12 512 155 HOH HOH . 
F 3 HOH B 13 513 126 HOH HOH . 
F 3 HOH B 14 514 41 HOH HOH . 
F 3 HOH B 15 515 62 HOH HOH . 
F 3 HOH B 16 516 112 HOH HOH . 
F 3 HOH B 17 517 45 HOH HOH . 
F 3 HOH B 18 518 85 HOH HOH . 
F 3 HOH B 19 519 6 HOH HOH . 
F 3 HOH B 20 520 74 HOH HOH . 
F 3 HOH B 21 521 89 HOH HOH . 
F 3 HOH B 22 522 33 HOH HOH . 
F 3 HOH B 23 523 63 HOH HOH . 
F 3 HOH B 24 524 154 HOH HOH . 
F 3 HOH B 25 525 104 HOH HOH . 
F 3 HOH B 26 526 134 HOH HOH . 
F 3 HOH B 27 527 90 HOH HOH . 
F 3 HOH B 28 528 51 HOH HOH . 
F 3 HOH B 29 529 136 HOH HOH . 
F 3 HOH B 30 530 99 HOH HOH . 
F 3 HOH B 31 531 147 HOH HOH . 
F 3 HOH B 32 532 27 HOH HOH . 
F 3 HOH B 33 533 130 HOH HOH . 
F 3 HOH B 34 534 2 HOH HOH . 
F 3 HOH B 35 535 23 HOH HOH . 
F 3 HOH B 36 536 140 HOH HOH . 
F 3 HOH B 37 537 109 HOH HOH . 
F 3 HOH B 38 538 31 HOH HOH . 
F 3 HOH B 39 539 7 HOH HOH . 
F 3 HOH B 40 540 9 HOH HOH . 
F 3 HOH B 41 541 111 HOH HOH . 
F 3 HOH B 42 542 117 HOH HOH . 
F 3 HOH B 43 543 114 HOH HOH . 
F 3 HOH B 44 544 8 HOH HOH . 
F 3 HOH B 45 545 118 HOH HOH . 
F 3 HOH B 46 546 58 HOH HOH . 
F 3 HOH B 47 547 69 HOH HOH . 
F 3 HOH B 48 548 56 HOH HOH . 
F 3 HOH B 49 549 138 HOH HOH . 
F 3 HOH B 50 550 43 HOH HOH . 
F 3 HOH B 51 551 59 HOH HOH . 
F 3 HOH B 52 552 93 HOH HOH . 
F 3 HOH B 53 553 64 HOH HOH . 
F 3 HOH B 54 554 57 HOH HOH . 
F 3 HOH B 55 555 127 HOH HOH . 
F 3 HOH B 56 556 116 HOH HOH . 
F 3 HOH B 57 557 48 HOH HOH . 
F 3 HOH B 58 558 133 HOH HOH . 
F 3 HOH B 59 559 61 HOH HOH . 
F 3 HOH B 60 560 47 HOH HOH . 
F 3 HOH B 61 561 119 HOH HOH . 
F 3 HOH B 62 562 103 HOH HOH . 
F 3 HOH B 63 563 18 HOH HOH . 
F 3 HOH B 64 564 55 HOH HOH . 
F 3 HOH B 65 565 108 HOH HOH . 
F 3 HOH B 66 566 100 HOH HOH . 
F 3 HOH B 67 567 84 HOH HOH . 
F 3 HOH B 68 568 123 HOH HOH . 
F 3 HOH B 69 569 137 HOH HOH . 
F 3 HOH B 70 570 124 HOH HOH . 
F 3 HOH B 71 571 139 HOH HOH . 
F 3 HOH B 72 572 120 HOH HOH . 
F 3 HOH B 73 573 142 HOH HOH . 
F 3 HOH B 74 574 113 HOH HOH . 
F 3 HOH B 75 575 70 HOH HOH . 
F 3 HOH B 76 576 146 HOH HOH . 
F 3 HOH B 77 577 91 HOH HOH . 
F 3 HOH B 78 578 122 HOH HOH . 
F 3 HOH B 79 579 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 80I . . . C 2 -22.814 -18.951 101.769 1 37.21 ? C10 80I 401 A 1 
HETATM 2 C C13 80I . . . C 2 -23.592 -19.842 104.256 1 43.32 ? C13 80I 401 A 1 
HETATM 3 C C15 80I . . . C 2 -20.61 -11.841 105.524 1 34.57 ? C15 80I 401 A 1 
HETATM 4 C C20 80I . . . C 2 -16.017 -11.306 103.534 1 34.74 ? C20 80I 401 A 1 
HETATM 5 C C21 80I . . . C 2 -15.188 -10.996 102.454 1 34.4 ? C21 80I 401 A 1 
HETATM 6 C C24 80I . . . C 2 -15.35 -12.628 104.237 1 38.2 ? C24 80I 401 A 1 
HETATM 7 C C26 80I . . . C 2 -16.654 -9.502 106.934 1 36.4 ? C26 80I 401 A 1 
HETATM 8 C C02 80I . . . C 2 -20.892 -13.405 103.601 1 37.08 ? C02 80I 401 A 1 
HETATM 9 C C03 80I . . . C 2 -21.333 -14.769 103.047 1 39.31 ? C03 80I 401 A 1 
HETATM 10 C C05 80I . . . C 2 -22.093 -15.741 103.706 1 41.04 ? C05 80I 401 A 1 
HETATM 11 C C06 80I . . . C 2 -22.234 -16.823 102.802 1 42.37 ? C06 80I 401 A 1 
HETATM 12 C C07 80I . . . C 2 -21.552 -16.464 101.654 1 42.54 ? C07 80I 401 A 1 
HETATM 13 C C08 80I . . . C 2 -21.501 -17.348 100.55 1 41.88 ? C08 80I 401 A 1 
HETATM 14 C C09 80I . . . C 2 -22.135 -18.586 100.607 1 40.27 ? C09 80I 401 A 1 
HETATM 15 C C11 80I . . . C 2 -22.868 -18.083 102.862 1 41.22 ? C11 80I 401 A 1 
HETATM 16 C C16 80I . . . C 2 -19.097 -11.802 105.811 1 38.2 ? C16 80I 401 A 1 
HETATM 17 C C18 80I . . . C 2 -16.87 -10.515 105.786 1 34.78 ? C18 80I 401 A 1 
HETATM 18 C C19 80I . . . C 2 -16.088 -10.135 104.522 1 33.21 ? C19 80I 401 A 1 
HETATM 19 C C23 80I . . . C 2 -14.395 -13.109 103.387 1 35.5 ? C23 80I 401 A 1 
HETATM 20 C C27 80I . . . C 2 -17.841 -9.109 107.804 1 36.33 ? C27 80I 401 A 1 
HETATM 21 C C35 80I . . . C 2 -21.468 -11.604 106.782 1 34.63 ? C35 80I 401 A 1 
HETATM 22 C C36 80I . . . C 2 -22.984 -11.86 106.615 1 36.41 ? C36 80I 401 A 1 
HETATM 23 C C37 80I . . . C 2 -23.789 -11.009 107.583 1 33.67 ? C37 80I 401 A 1 
HETATM 24 C C38 80I . . . C 2 -23.425 -13.31 106.843 1 42.77 ? C38 80I 401 A 1 
HETATM 25 N N04 80I . . . C 2 -21.032 -15.234 101.844 1 43.33 ? N04 80I 401 A 1 
HETATM 26 N N14 80I . . . C 2 -21.016 -13.131 105.003 1 37.41 ? N14 80I 401 A 1 
HETATM 27 N N17 80I . . . C 2 -18.304 -10.614 105.521 1 34.68 ? N17 80I 401 A 1 
HETATM 28 N N22 80I . . . C 2 -14.184 -12.019 102.265 1 33.05 ? N22 80I 401 A 1 
HETATM 29 O O01 80I . . . C 2 -20.376 -12.573 102.925 1 34.36 ? O01 80I 401 A 1 
HETATM 30 O O12 80I . . . C 2 -23.557 -18.46 104.025 1 44.35 ? O12 80I 401 A 1 
HETATM 31 O O25 80I . . . C 2 -15.315 -10.023 101.777 1 27.33 ? O25 80I 401 A 1 
HETATM 32 O O28 80I . . . C 2 -17.966 -10.117 108.801 1 47.14 ? O28 80I 401 A 1 
HETATM 33 O O30 80I . . . C 2 -17.016 -11.611 110.751 1 52.38 -1 O30 80I 401 A 1 
HETATM 34 O O31 80I . . . C 2 -15.396 -10.239 109.465 1 48.62 -1 O31 80I 401 A 1 
HETATM 35 O O32 80I . . . C 2 -16.358 -12.256 108.489 1 54.29 ? O32 80I 401 A 1 
HETATM 36 O O33 80I . . . C 2 -15.594 -9.016 107.2 1 35.44 ? O33 80I 401 A 1 
HETATM 37 O O34 80I . . . C 2 -18.556 -12.748 106.263 1 37.77 ? O34 80I 401 A 1 
HETATM 38 P P29 80I . . . C 2 -16.678 -11.062 109.37 1 65.47 ? P29 80I 401 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           38 
#