data_8IM6 # _model_server_result.job_id SzpnndsW9OhdRivrxX9egQ _model_server_result.datetime_utc '2024-11-21 15:17:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8im6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8IM6 # _exptl.entry_id 8IM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.514 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.959 _cell.angle_gamma 90 _cell.entry_id 8IM6 _cell.length_a 53.522 _cell.length_b 77.012 _cell.length_c 74.626 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H33 N4 O9 P' _chem_comp.formula_weight 552.514 _chem_comp.id 80I _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N22 C23 80I sing 1 n n N22 C21 80I sing 2 n n C23 C24 80I sing 3 n n C21 O25 80I doub 4 n n C21 C20 80I sing 5 n n C24 C20 80I sing 6 n n C20 C19 80I sing 7 n n C08 C09 80I doub 8 n y C08 C07 80I sing 9 n y C09 C10 80I sing 10 n y C19 C18 80I sing 11 n n C07 N04 80I sing 12 n y C07 C06 80I doub 13 n y C10 C11 80I doub 14 n y N04 C03 80I sing 15 n y O31 P29 80I doub 16 n n C18 C26 80I sing 17 n n C18 N17 80I sing 18 n n O32 P29 80I sing 19 n n C06 C11 80I sing 20 n y C06 C05 80I sing 21 n y C11 O12 80I sing 22 n n O33 C26 80I doub 23 n n O01 C02 80I doub 24 n n C03 C02 80I sing 25 n n C03 C05 80I doub 26 n y C26 C27 80I sing 27 n n C02 N14 80I sing 28 n n P29 O28 80I sing 29 n n P29 O30 80I sing 30 n n O34 C16 80I doub 31 n n N17 C16 80I sing 32 n n O12 C13 80I sing 33 n n C16 C15 80I sing 34 n n O28 C27 80I sing 35 n n N14 C15 80I sing 36 n n C15 C35 80I sing 37 n n C35 C36 80I sing 38 n n C36 C38 80I sing 39 n n C36 C37 80I sing 40 n n C10 H1 80I sing 41 n n C13 H2 80I sing 42 n n C13 H3 80I sing 43 n n C13 H4 80I sing 44 n n C15 H5 80I sing 45 n n C20 H6 80I sing 46 n n C24 H7 80I sing 47 n n C24 H8 80I sing 48 n n C05 H9 80I sing 49 n n C08 H10 80I sing 50 n n C09 H11 80I sing 51 n n C18 H12 80I sing 52 n n C19 H13 80I sing 53 n n C19 H14 80I sing 54 n n C23 H15 80I sing 55 n n C27 H16 80I sing 56 n n C27 H17 80I sing 57 n n C35 H18 80I sing 58 n n C35 H19 80I sing 59 n n C36 H20 80I sing 60 n n C37 H21 80I sing 61 n n C37 H22 80I sing 62 n n C37 H23 80I sing 63 n n C38 H24 80I sing 64 n n C38 H25 80I sing 65 n n C38 H26 80I sing 66 n n N04 H27 80I sing 67 n n N14 H28 80I sing 68 n n N17 H29 80I sing 69 n n O30 H30 80I sing 70 n n O32 H31 80I sing 71 n n N22 H32 80I sing 72 n n C23 H33 80I sing 73 n n # _atom_sites.entry_id 8IM6 _atom_sites.fract_transf_matrix[1][1] 0.018684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003957 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 80I A 1 401 2 80I LIG . D 2 80I B 1 401 1 80I LIG . E 3 HOH A 1 501 54 HOH HOH . E 3 HOH A 2 502 92 HOH HOH . E 3 HOH A 3 503 95 HOH HOH . E 3 HOH A 4 504 36 HOH HOH . E 3 HOH A 5 505 102 HOH HOH . E 3 HOH A 6 506 80 HOH HOH . E 3 HOH A 7 507 1 HOH HOH . E 3 HOH A 8 508 65 HOH HOH . E 3 HOH A 9 509 32 HOH HOH . E 3 HOH A 10 510 73 HOH HOH . E 3 HOH A 11 511 52 HOH HOH . E 3 HOH A 12 512 29 HOH HOH . E 3 HOH A 13 513 83 HOH HOH . E 3 HOH A 14 514 110 HOH HOH . E 3 HOH A 15 515 88 HOH HOH . E 3 HOH A 16 516 44 HOH HOH . E 3 HOH A 17 517 26 HOH HOH . E 3 HOH A 18 518 60 HOH HOH . E 3 HOH A 19 519 53 HOH HOH . E 3 HOH A 20 520 40 HOH HOH . E 3 HOH A 21 521 30 HOH HOH . E 3 HOH A 22 522 15 HOH HOH . E 3 HOH A 23 523 96 HOH HOH . E 3 HOH A 24 524 39 HOH HOH . E 3 HOH A 25 525 68 HOH HOH . E 3 HOH A 26 526 98 HOH HOH . E 3 HOH A 27 527 143 HOH HOH . E 3 HOH A 28 528 105 HOH HOH . E 3 HOH A 29 529 4 HOH HOH . E 3 HOH A 30 530 21 HOH HOH . E 3 HOH A 31 531 19 HOH HOH . E 3 HOH A 32 532 131 HOH HOH . E 3 HOH A 33 533 5 HOH HOH . E 3 HOH A 34 534 49 HOH HOH . E 3 HOH A 35 535 75 HOH HOH . E 3 HOH A 36 536 34 HOH HOH . E 3 HOH A 37 537 86 HOH HOH . E 3 HOH A 38 538 37 HOH HOH . E 3 HOH A 39 539 11 HOH HOH . E 3 HOH A 40 540 152 HOH HOH . E 3 HOH A 41 541 24 HOH HOH . E 3 HOH A 42 542 151 HOH HOH . E 3 HOH A 43 543 3 HOH HOH . E 3 HOH A 44 544 22 HOH HOH . E 3 HOH A 45 545 50 HOH HOH . E 3 HOH A 46 546 71 HOH HOH . E 3 HOH A 47 547 153 HOH HOH . E 3 HOH A 48 548 67 HOH HOH . E 3 HOH A 49 549 141 HOH HOH . E 3 HOH A 50 550 101 HOH HOH . E 3 HOH A 51 551 94 HOH HOH . E 3 HOH A 52 552 144 HOH HOH . E 3 HOH A 53 553 38 HOH HOH . E 3 HOH A 54 554 135 HOH HOH . E 3 HOH A 55 555 132 HOH HOH . E 3 HOH A 56 556 78 HOH HOH . E 3 HOH A 57 557 35 HOH HOH . E 3 HOH A 58 558 129 HOH HOH . E 3 HOH A 59 559 28 HOH HOH . E 3 HOH A 60 560 115 HOH HOH . E 3 HOH A 61 561 148 HOH HOH . E 3 HOH A 62 562 106 HOH HOH . E 3 HOH A 63 563 81 HOH HOH . E 3 HOH A 64 564 125 HOH HOH . E 3 HOH A 65 565 145 HOH HOH . E 3 HOH A 66 566 46 HOH HOH . E 3 HOH A 67 567 149 HOH HOH . E 3 HOH A 68 568 72 HOH HOH . E 3 HOH A 69 569 150 HOH HOH . E 3 HOH A 70 570 128 HOH HOH . E 3 HOH A 71 571 77 HOH HOH . E 3 HOH A 72 572 76 HOH HOH . F 3 HOH B 1 501 79 HOH HOH . F 3 HOH B 2 502 14 HOH HOH . F 3 HOH B 3 503 82 HOH HOH . F 3 HOH B 4 504 17 HOH HOH . F 3 HOH B 5 505 13 HOH HOH . F 3 HOH B 6 506 121 HOH HOH . F 3 HOH B 7 507 42 HOH HOH . F 3 HOH B 8 508 12 HOH HOH . F 3 HOH B 9 509 66 HOH HOH . F 3 HOH B 10 510 107 HOH HOH . F 3 HOH B 11 511 20 HOH HOH . F 3 HOH B 12 512 155 HOH HOH . F 3 HOH B 13 513 126 HOH HOH . F 3 HOH B 14 514 41 HOH HOH . F 3 HOH B 15 515 62 HOH HOH . F 3 HOH B 16 516 112 HOH HOH . F 3 HOH B 17 517 45 HOH HOH . F 3 HOH B 18 518 85 HOH HOH . F 3 HOH B 19 519 6 HOH HOH . F 3 HOH B 20 520 74 HOH HOH . F 3 HOH B 21 521 89 HOH HOH . F 3 HOH B 22 522 33 HOH HOH . F 3 HOH B 23 523 63 HOH HOH . F 3 HOH B 24 524 154 HOH HOH . F 3 HOH B 25 525 104 HOH HOH . F 3 HOH B 26 526 134 HOH HOH . F 3 HOH B 27 527 90 HOH HOH . F 3 HOH B 28 528 51 HOH HOH . F 3 HOH B 29 529 136 HOH HOH . F 3 HOH B 30 530 99 HOH HOH . F 3 HOH B 31 531 147 HOH HOH . F 3 HOH B 32 532 27 HOH HOH . F 3 HOH B 33 533 130 HOH HOH . F 3 HOH B 34 534 2 HOH HOH . F 3 HOH B 35 535 23 HOH HOH . F 3 HOH B 36 536 140 HOH HOH . F 3 HOH B 37 537 109 HOH HOH . F 3 HOH B 38 538 31 HOH HOH . F 3 HOH B 39 539 7 HOH HOH . F 3 HOH B 40 540 9 HOH HOH . F 3 HOH B 41 541 111 HOH HOH . F 3 HOH B 42 542 117 HOH HOH . F 3 HOH B 43 543 114 HOH HOH . F 3 HOH B 44 544 8 HOH HOH . F 3 HOH B 45 545 118 HOH HOH . F 3 HOH B 46 546 58 HOH HOH . F 3 HOH B 47 547 69 HOH HOH . F 3 HOH B 48 548 56 HOH HOH . F 3 HOH B 49 549 138 HOH HOH . F 3 HOH B 50 550 43 HOH HOH . F 3 HOH B 51 551 59 HOH HOH . F 3 HOH B 52 552 93 HOH HOH . F 3 HOH B 53 553 64 HOH HOH . F 3 HOH B 54 554 57 HOH HOH . F 3 HOH B 55 555 127 HOH HOH . F 3 HOH B 56 556 116 HOH HOH . F 3 HOH B 57 557 48 HOH HOH . F 3 HOH B 58 558 133 HOH HOH . F 3 HOH B 59 559 61 HOH HOH . F 3 HOH B 60 560 47 HOH HOH . F 3 HOH B 61 561 119 HOH HOH . F 3 HOH B 62 562 103 HOH HOH . F 3 HOH B 63 563 18 HOH HOH . F 3 HOH B 64 564 55 HOH HOH . F 3 HOH B 65 565 108 HOH HOH . F 3 HOH B 66 566 100 HOH HOH . F 3 HOH B 67 567 84 HOH HOH . F 3 HOH B 68 568 123 HOH HOH . F 3 HOH B 69 569 137 HOH HOH . F 3 HOH B 70 570 124 HOH HOH . F 3 HOH B 71 571 139 HOH HOH . F 3 HOH B 72 572 120 HOH HOH . F 3 HOH B 73 573 142 HOH HOH . F 3 HOH B 74 574 113 HOH HOH . F 3 HOH B 75 575 70 HOH HOH . F 3 HOH B 76 576 146 HOH HOH . F 3 HOH B 77 577 91 HOH HOH . F 3 HOH B 78 578 122 HOH HOH . F 3 HOH B 79 579 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 80I . . . D 2 15.448 11.448 74.571 1 36.07 ? C10 80I 401 B 1 HETATM 2 C C13 80I . . . D 2 15.33 14.674 74.813 1 39.28 ? C13 80I 401 B 1 HETATM 3 C C15 80I . . . D 2 13.731 14.205 82.247 1 29.84 ? C15 80I 401 B 1 HETATM 4 C C20 80I . . . D 2 9.053 12.445 82.835 1 31.67 ? C20 80I 401 B 1 HETATM 5 C C21 80I . . . D 2 8.078 11.433 82.924 1 31.97 ? C21 80I 401 B 1 HETATM 6 C C24 80I . . . D 2 8.367 13.584 81.884 1 28.68 ? C24 80I 401 B 1 HETATM 7 C C26 80I . . . D 2 10.113 15.282 85.281 1 29.09 ? C26 80I 401 B 1 HETATM 8 C C02 80I . . . D 2 13.609 12.636 80.258 1 33.72 ? C02 80I 401 B 1 HETATM 9 C C03 80I . . . D 2 14.017 12.31 78.833 1 34.93 ? C03 80I 401 B 1 HETATM 10 C C05 80I . . . D 2 14.773 13.073 77.942 1 34.29 ? C05 80I 401 B 1 HETATM 11 C C06 80I . . . D 2 14.895 12.272 76.783 1 32.27 ? C06 80I 401 B 1 HETATM 12 C C07 80I . . . D 2 14.24 11.084 77.046 1 35.91 ? C07 80I 401 B 1 HETATM 13 C C08 80I . . . D 2 14.174 10.061 76.081 1 35.9 ? C08 80I 401 B 1 HETATM 14 C C09 80I . . . D 2 14.781 10.249 74.846 1 40.01 ? C09 80I 401 B 1 HETATM 15 C C11 80I . . . D 2 15.499 12.452 75.53 1 31.97 ? C11 80I 401 B 1 HETATM 16 C C16 80I . . . D 2 12.246 14.473 82.464 1 32.69 ? C16 80I 401 B 1 HETATM 17 C C18 80I . . . D 2 10.249 14.335 84.065 1 29.85 ? C18 80I 401 B 1 HETATM 18 C C19 80I . . . D 2 9.462 13.026 84.203 1 24.74 ? C19 80I 401 B 1 HETATM 19 C C23 80I . . . D 2 7.519 12.892 81.071 1 33.21 ? C23 80I 401 B 1 HETATM 20 C C27 80I . . . D 2 11.077 16.453 85.373 1 29.88 ? C27 80I 401 B 1 HETATM 21 C C35 80I . . . D 2 14.524 15.458 82.643 1 27.73 ? C35 80I 401 B 1 HETATM 22 C C36 80I . . . D 2 16.03 15.233 82.905 1 33.68 ? C36 80I 401 B 1 HETATM 23 C C37 80I . . . D 2 16.815 14.733 81.698 1 33.68 ? C37 80I 401 B 1 HETATM 24 C C38 80I . . . D 2 16.692 16.532 83.352 1 32.99 ? C38 80I 401 B 1 HETATM 25 N N04 80I . . . D 2 13.743 11.15 78.283 1 34.67 ? N04 80I 401 B 1 HETATM 26 N N14 80I . . . D 2 14.034 13.871 80.861 1 31.2 ? N14 80I 401 B 1 HETATM 27 N N17 80I . . . D 2 11.653 14.094 83.746 1 27.98 ? N17 80I 401 B 1 HETATM 28 N N22 80I . . . D 2 7.112 11.602 81.88 1 29.98 ? N22 80I 401 B 1 HETATM 29 O O01 80I . . . D 2 12.993 11.831 80.885 1 33.11 ? O01 80I 401 B 1 HETATM 30 O O12 80I . . . D 2 16.165 13.643 75.243 1 37.18 ? O12 80I 401 B 1 HETATM 31 O O25 80I . . . D 2 8.053 10.548 83.723 1 27.19 ? O25 80I 401 B 1 HETATM 32 O O28 80I . . . D 2 10.806 17.204 84.207 1 35.45 ? O28 80I 401 B 1 HETATM 33 O O30 80I . . . D 2 10.12 19.632 84.759 1 43.49 -1 O30 80I 401 B 1 HETATM 34 O O31 80I . . . D 2 8.354 17.929 84.9 1 36.5 -1 O31 80I 401 B 1 HETATM 35 O O32 80I . . . D 2 9.217 18.566 82.683 1 36.94 ? O32 80I 401 B 1 HETATM 36 O O33 80I . . . D 2 9.169 15.255 86.016 1 29.4 ? O33 80I 401 B 1 HETATM 37 O O34 80I . . . D 2 11.619 14.998 81.605 1 31.89 ? O34 80I 401 B 1 HETATM 38 P P29 80I . . . D 2 9.596 18.349 84.138 1 40.4 ? P29 80I 401 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #