data_8IME # _model_server_result.job_id Lzyltiu9RRJOJSw8wJd8nw _model_server_result.datetime_utc '2024-11-23 23:33:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ime # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8IME # _exptl.entry_id 8IME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,6-dihydroxy-4-oxo-2-phenyl-4H-chromen-7-yl beta-D-glucopyranosiduronic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.95 _cell.angle_gamma 90 _cell.entry_id 8IME _cell.length_a 216.872 _cell.length_b 47.36 _cell.length_c 87.993 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IME _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 234 A HIS 390 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 A SG CYS 240 A CYS 396 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A SG CYS 241 A CYS 397 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 A SG CYS 248 A CYS 404 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc5 B NE2 HIS 234 B HIS 390 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc6 B SG CYS 240 B CYS 396 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 B SG CYS 241 B CYS 397 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 B SG CYS 248 B CYS 404 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'C21 H18 O11' _chem_comp.formula_weight 446.361 _chem_comp.id 0XE _chem_comp.mon_nstd_flag . _chem_comp.name '5,6-dihydroxy-4-oxo-2-phenyl-4H-chromen-7-yl beta-D-glucopyranosiduronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Baicalin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 0XE doub 1 n y C3 C4 0XE sing 2 n y C2 C1 0XE sing 3 n y C4 C5 0XE doub 4 n y C1 C6 0XE doub 5 n y C5 C6 0XE sing 6 n y C5 C7 0XE sing 7 n n C8 C7 0XE doub 8 n n C8 C9 0XE sing 9 n n C7 O12 0XE sing 10 n n O9 C9 0XE doub 11 n n C9 C10 0XE sing 12 n n O12 C11 0XE sing 13 n n C10 C11 0XE sing 14 n y C10 C17 0XE doub 15 n y C11 C14 0XE doub 16 n y O17 C17 0XE sing 17 n n C17 C16 0XE sing 18 n y C14 C15 0XE sing 19 n y C16 C15 0XE doub 20 n y C16 O16 0XE sing 21 n n C15 O18 0XE sing 22 n n O24 C23 0XE doub 23 n n C23 O23 0XE sing 24 n n C23 C22 0XE sing 25 n n O18 C18 0XE sing 26 n n O22 C22 0XE sing 27 n n O22 C18 0XE sing 28 n n C22 C21 0XE sing 29 n n C18 C19 0XE sing 30 n n C21 O21 0XE sing 31 n n C21 C20 0XE sing 32 n n C19 O19 0XE sing 33 n n C19 C20 0XE sing 34 n n C20 O20 0XE sing 35 n n C1 H1 0XE sing 36 n n C2 H2 0XE sing 37 n n C3 H3 0XE sing 38 n n C4 H4 0XE sing 39 n n C6 H5 0XE sing 40 n n C8 H6 0XE sing 41 n n O17 H8 0XE sing 42 n n O16 H9 0XE sing 43 n n C14 H10 0XE sing 44 n n C18 H11 0XE sing 45 n n C22 H12 0XE sing 46 n n O23 H13 0XE sing 47 n n C19 H14 0XE sing 48 n n O19 H15 0XE sing 49 n n C20 H16 0XE sing 50 n n O20 H17 0XE sing 51 n n C21 H18 0XE sing 52 n n O21 H19 0XE sing 53 n n # _atom_sites.entry_id 8IME _atom_sites.fract_transf_matrix[1][1] 0.004611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001859 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0XE A 1 601 601 0XE LIG . D 3 ZN A 1 602 2 ZN ZN . E 2 0XE B 1 601 601 0XE LIG . F 3 ZN B 1 602 1 ZN ZN . G 4 HOH A 1 701 8 HOH HOH . G 4 HOH A 2 702 4 HOH HOH . G 4 HOH A 3 703 5 HOH HOH . G 4 HOH A 4 704 15 HOH HOH . G 4 HOH A 5 705 2 HOH HOH . G 4 HOH A 6 706 9 HOH HOH . G 4 HOH A 7 707 11 HOH HOH . G 4 HOH A 8 708 1 HOH HOH . G 4 HOH A 9 709 6 HOH HOH . H 4 HOH B 1 701 16 HOH HOH . H 4 HOH B 2 702 7 HOH HOH . H 4 HOH B 3 703 14 HOH HOH . H 4 HOH B 4 704 3 HOH HOH . H 4 HOH B 5 705 13 HOH HOH . H 4 HOH B 6 706 12 HOH HOH . H 4 HOH B 7 707 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0XE . . . C 2 263.665 3.208 -70.691 1 39.09 ? C1 0XE 601 A 1 HETATM 2 C C2 0XE . . . C 2 264.353 2.381 -71.548 1 28.92 ? C2 0XE 601 A 1 HETATM 3 C C3 0XE . . . C 2 264.807 1.164 -71.101 1 40.99 ? C3 0XE 601 A 1 HETATM 4 C C4 0XE . . . C 2 264.576 0.77 -69.796 1 39.99 ? C4 0XE 601 A 1 HETATM 5 C C5 0XE . . . C 2 263.889 1.596 -68.908 1 25.4 ? C5 0XE 601 A 1 HETATM 6 C C6 0XE . . . C 2 263.43 2.825 -69.382 1 20.29 ? C6 0XE 601 A 1 HETATM 7 C C7 0XE . . . C 2 263.645 1.153 -67.522 1 27.42 ? C7 0XE 601 A 1 HETATM 8 C C8 0XE . . . C 2 263.779 -0.124 -67.117 1 25.34 ? C8 0XE 601 A 1 HETATM 9 C C9 0XE . . . C 2 263.532 -0.541 -65.764 1 26.4 ? C9 0XE 601 A 1 HETATM 10 O O9 0XE . . . C 2 263.661 -1.728 -65.4 1 38.37 ? O9 0XE 601 A 1 HETATM 11 O O12 0XE . . . C 2 263.259 2.133 -66.657 1 24.68 ? O12 0XE 601 A 1 HETATM 12 C C11 0XE . . . C 2 263.006 1.821 -65.336 1 23.91 ? C11 0XE 601 A 1 HETATM 13 C C10 0XE . . . C 2 263.126 0.517 -64.857 1 20.18 ? C10 0XE 601 A 1 HETATM 14 C C17 0XE . . . C 2 262.841 0.3 -63.486 1 29.38 ? C17 0XE 601 A 1 HETATM 15 O O17 0XE . . . C 2 262.941 -0.94 -62.959 1 27.94 ? O17 0XE 601 A 1 HETATM 16 C C16 0XE . . . C 2 262.465 1.346 -62.673 1 19.61 ? C16 0XE 601 A 1 HETATM 17 O O16 0XE . . . C 2 262.194 1.11 -61.355 1 31.53 ? O16 0XE 601 A 1 HETATM 18 C C14 0XE . . . C 2 262.625 2.879 -64.537 1 24.86 ? C14 0XE 601 A 1 HETATM 19 C C15 0XE . . . C 2 262.352 2.64 -63.197 1 26.44 ? C15 0XE 601 A 1 HETATM 20 O O18 0XE . . . C 2 261.96 3.664 -62.351 1 40.82 ? O18 0XE 601 A 1 HETATM 21 C C18 0XE . . . C 2 261.67 4.917 -62.944 1 54.99 ? C18 0XE 601 A 1 HETATM 22 O O22 0XE . . . C 2 262.872 5.61 -63.232 1 53.58 ? O22 0XE 601 A 1 HETATM 23 C C22 0XE . . . C 2 262.645 6.815 -63.963 1 84.86 ? C22 0XE 601 A 1 HETATM 24 C C23 0XE . . . C 2 263.985 7.491 -64.193 1 80.78 ? C23 0XE 601 A 1 HETATM 25 O O24 0XE . . . C 2 264.227 7.983 -65.277 1 68.98 ? O24 0XE 601 A 1 HETATM 26 O O23 0XE . . . C 2 264.802 7.515 -63.292 1 76.34 -1 O23 0XE 601 A 1 HETATM 27 C C19 0XE . . . C 2 260.85 5.748 -61.974 1 58.89 ? C19 0XE 601 A 1 HETATM 28 O O19 0XE . . . C 2 259.687 5.041 -61.548 1 54.57 ? O19 0XE 601 A 1 HETATM 29 C C20 0XE . . . C 2 260.468 7.029 -62.693 1 72.45 ? C20 0XE 601 A 1 HETATM 30 O O20 0XE . . . C 2 259.717 7.882 -61.829 1 70.2 ? O20 0XE 601 A 1 HETATM 31 C C21 0XE . . . C 2 261.698 7.764 -63.215 1 91.53 ? C21 0XE 601 A 1 HETATM 32 O O21 0XE . . . C 2 261.284 8.802 -64.11 1 77.58 ? O21 0XE 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #