data_8IMF # _model_server_result.job_id D6fLjuTju7f-JD7vzUaMhQ _model_server_result.datetime_utc '2024-11-05 12:36:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8imf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 8IMF # _exptl.entry_id 8IMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.42 _cell.angle_gamma 90 _cell.entry_id 8IMF _cell.length_a 213.367 _cell.length_b 45.981 _cell.length_c 87.183 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 234 A HIS 390 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 A SG CYS 240 A CYS 396 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 A SG CYS 241 A CYS 397 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc4 A SG CYS 248 A CYS 404 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 B NE2 HIS 234 B HIS 390 1_555 E ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc6 B SG CYS 240 B CYS 396 1_555 E ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc7 B SG CYS 241 B CYS 397 1_555 E ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc8 B SG CYS 248 B CYS 404 1_555 E ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id 3WL _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Baicalein # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C 3WL doub 1 n y C5 C4 3WL sing 2 n y C C1 3WL sing 3 n y C4 C3 3WL doub 4 n y C1 C2 3WL doub 5 n y C3 C2 3WL sing 6 n y C3 C6 3WL sing 7 n n C7 C6 3WL doub 8 n n C7 C8 3WL sing 9 n n O C8 3WL doub 10 n n C6 O1 3WL sing 11 n n C8 C9 3WL sing 12 n n O1 C14 3WL sing 13 n n C9 C14 3WL doub 14 n y C9 C10 3WL sing 15 n y O4 C10 3WL sing 16 n n C14 C13 3WL sing 17 n y C10 C11 3WL doub 18 n y C13 C12 3WL doub 19 n y C11 C12 3WL sing 20 n y C11 O3 3WL sing 21 n n C12 O2 3WL sing 22 n n C4 H1 3WL sing 23 n n C5 H2 3WL sing 24 n n C7 H3 3WL sing 25 n n C13 H4 3WL sing 26 n n O2 H5 3WL sing 27 n n O3 H6 3WL sing 28 n n O4 H7 3WL sing 29 n n C2 H8 3WL sing 30 n n C1 H9 3WL sing 31 n n C H10 3WL sing 32 n n # _atom_sites.entry_id 8IMF _atom_sites.fract_transf_matrix[1][1] 0.004687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 1 ZN ZN . D 3 3WL B 1 601 1 3WL LIG . E 2 ZN B 1 602 2 ZN ZN . F 4 HOH A 1 701 2 HOH HOH . F 4 HOH A 2 702 6 HOH HOH . F 4 HOH A 3 703 3 HOH HOH . F 4 HOH A 4 704 8 HOH HOH . F 4 HOH A 5 705 14 HOH HOH . G 4 HOH B 1 701 4 HOH HOH . G 4 HOH B 2 702 9 HOH HOH . G 4 HOH B 3 703 13 HOH HOH . G 4 HOH B 4 704 11 HOH HOH . G 4 HOH B 5 705 12 HOH HOH . G 4 HOH B 6 706 7 HOH HOH . G 4 HOH B 7 707 1 HOH HOH . G 4 HOH B 8 708 10 HOH HOH . G 4 HOH B 9 709 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 3WL . . . D 3 3.6 14.887 36.043 1 67.63 ? C4 3WL 601 B 1 HETATM 2 C C5 3WL . . . D 3 3.733 16.262 36.012 1 67.6 ? C5 3WL 601 B 1 HETATM 3 C C6 3WL . . . D 3 2.858 12.795 37.173 1 67.86 ? C6 3WL 601 B 1 HETATM 4 C C7 3WL . . . D 3 3.381 11.961 36.257 1 71.08 ? C7 3WL 601 B 1 HETATM 5 C C8 3WL . . . D 3 3.216 10.536 36.331 1 72.12 ? C8 3WL 601 B 1 HETATM 6 C C10 3WL . . . D 3 2.168 8.696 37.706 1 69.77 ? C10 3WL 601 B 1 HETATM 7 C C13 3WL . . . D 3 1.173 10.623 39.485 1 70.1 ? C13 3WL 601 B 1 HETATM 8 O O 3WL . . . D 3 3.705 9.765 35.478 1 72.99 ? O 3WL 601 B 1 HETATM 9 C C9 3WL . . . D 3 2.436 10.065 37.468 1 66.87 ? C9 3WL 601 B 1 HETATM 10 C C14 3WL . . . D 3 1.918 10.985 38.381 1 70.83 ? C14 3WL 601 B 1 HETATM 11 C C12 3WL . . . D 3 0.925 9.277 39.694 1 68.52 ? C12 3WL 601 B 1 HETATM 12 O O2 3WL . . . D 3 0.196 8.873 40.762 1 73.28 ? O2 3WL 601 B 1 HETATM 13 C C11 3WL . . . D 3 1.425 8.315 38.803 1 74.51 ? C11 3WL 601 B 1 HETATM 14 O O3 3WL . . . D 3 1.181 6.987 39.01 1 74.22 ? O3 3WL 601 B 1 HETATM 15 O O4 3WL . . . D 3 2.644 7.761 36.855 1 72.94 ? O4 3WL 601 B 1 HETATM 16 O O1 3WL . . . D 3 2.131 12.338 38.229 1 66.34 ? O1 3WL 601 B 1 HETATM 17 C C3 3WL . . . D 3 3.004 14.258 37.135 1 67.23 ? C3 3WL 601 B 1 HETATM 18 C C2 3WL . . . D 3 2.545 15.047 38.188 1 65.68 ? C2 3WL 601 B 1 HETATM 19 C C1 3WL . . . D 3 2.684 16.422 38.145 1 69.19 ? C1 3WL 601 B 1 HETATM 20 C C 3WL . . . D 3 3.278 17.027 37.062 1 64.1 ? C 3WL 601 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #