data_8IMK
#
_model_server_result.job_id            RU0M9Ym4NxLFwXBaIMH16A 
_model_server_result.datetime_utc      '2024-10-19 17:32:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8imk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AC","auth_seq_id":200}' 
#
_entry.id    8IMK 
#
_exptl.entry_id    8IMK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOCYANOBILIN 
_entity.pdbx_number_of_molecules    48 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    54-meric 
_pdbx_struct_assembly.oligomeric_count      54 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 CB N N 
? 7 DB N N 
? 7 EB N N 
? 7 FB N N 
? 7 GB N N 
? 7 HB N N 
? 7 IB N N 
? 7 JB N N 
? 7 KB N N 
? 7 LB N N 
? 7 MB N N 
? 7 NB N N 
? 7 OB N N 
? 7 PB N N 
? 7 QB N N 
? 7 RB N N 
? 7 SB N N 
? 7 TB N N 
? 7 UB N N 
? 7 VB N N 
? 7 WB N N 
? 7 XB N N 
? 7 YB N N 
? 7 ZB N N 
? 7 AC N N 
? 7 BC N N 
? 7 CC N N 
? 7 DC N N 
? 7 EC N N 
? 7 FC N N 
? 7 GC N N 
? 7 HC N N 
? 7 IC N N 
? 7 JC N N 
? 7 KC N N 
? 7 LC N N 
? 7 MC N N 
? 7 NC N N 
? 7 OC N N 
? 7 PC N N 
? 7 QC N N 
? 7 RC N N 
? 7 SC N N 
? 7 TC N N 
? 7 UC N N 
? 7 VC N N 
? 7 WC N N 
? 7 XC N N 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                CYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOCYANOBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A CYC doub 70 z n 
CHA C4D CYC sing 71 n n 
CHA HHA CYC sing 72 n n 
NA C1A CYC sing 73 n n 
NA C4A CYC doub 74 n n 
C1A C2A CYC sing 75 n n 
C2A C3A CYC doub 76 n n 
C2A CAA CYC sing 77 n n 
C3A C4A CYC sing 78 n n 
C3A CMA CYC sing 79 n n 
C4A CHB CYC sing 80 n n 
CMA HMA1 CYC sing 81 n n 
CMA HMA2 CYC sing 82 n n 
CMA HMA3 CYC sing 83 n n 
CAA CBA CYC sing 84 n n 
CAA HAA1 CYC sing 85 n n 
CAA HAA2 CYC sing 86 n n 
CBA CGA CYC sing 87 n n 
CBA HBA1 CYC sing 88 n n 
CBA HBA2 CYC sing 89 n n 
CGA O1A CYC doub 90 n n 
CGA O2A CYC sing 91 n n 
O2A H2A CYC sing 92 n n 
CHB C1B CYC doub 93 z n 
CHB HHB CYC sing 94 n n 
NB C1B CYC sing 95 n n 
NB C4B CYC sing 96 n n 
NB HB CYC sing 97 n n 
C1B C2B CYC sing 98 n n 
C2B C3B CYC doub 99 n n 
C2B CMB CYC sing 100 n n 
C3B C4B CYC sing 101 n n 
C3B CAB CYC sing 102 n n 
C4B OB CYC doub 103 n n 
CMB HMB1 CYC sing 104 n n 
CMB HMB2 CYC sing 105 n n 
CMB HMB3 CYC sing 106 n n 
CAB CBB CYC sing 107 n n 
CAB HAB1 CYC sing 108 n n 
CAB HAB2 CYC sing 109 n n 
CBB HBB1 CYC sing 110 n n 
CBB HBB2 CYC sing 111 n n 
CBB HBB3 CYC sing 112 n n 
NC C1C CYC sing 113 n n 
NC C4C CYC sing 114 n n 
NC HC CYC sing 115 n n 
C1C C2C CYC sing 116 n n 
C1C OC CYC doub 117 n n 
C2C C3C CYC sing 118 n n 
C2C CMC CYC sing 119 n n 
C2C H2C CYC sing 120 n n 
C3C C4C CYC sing 121 n n 
C3C CAC CYC sing 122 n n 
C3C H3C CYC sing 123 n n 
C4C CHD CYC doub 124 z n 
CMC HMC1 CYC sing 125 n n 
CMC HMC2 CYC sing 126 n n 
CMC HMC3 CYC sing 127 n n 
CAC CBC CYC sing 128 n n 
CAC HAC1 CYC sing 129 n n 
CAC HAC2 CYC sing 130 n n 
CBC HBC1 CYC sing 131 n n 
CBC HBC2 CYC sing 132 n n 
CBC HBC3 CYC sing 133 n n 
CHD C1D CYC sing 134 n n 
CHD HHD CYC sing 135 n n 
ND C1D CYC sing 136 n y 
ND C4D CYC sing 137 n y 
ND HD CYC sing 138 n n 
C1D C2D CYC doub 139 n y 
C2D C3D CYC sing 140 n y 
C2D CMD CYC sing 141 n n 
C3D C4D CYC doub 142 n y 
C3D CAD CYC sing 143 n n 
CMD HMD1 CYC sing 144 n n 
CMD HMD2 CYC sing 145 n n 
CMD HMD3 CYC sing 146 n n 
CAD CBD CYC sing 147 n n 
CAD HAD1 CYC sing 148 n n 
CAD HAD2 CYC sing 149 n n 
CBD CGD CYC sing 150 n n 
CBD HBD1 CYC sing 151 n n 
CBD HBD2 CYC sing 152 n n 
CGD O1D CYC doub 153 n n 
CGD O2D CYC sing 154 n n 
O2D H2D CYC sing 155 n n 
#
_atom_sites.entry_id                     8IMK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CB 7 CYC A 1 200 200 CYC CYC . 
DB 7 CYC B 1 200 200 CYC CYC . 
EB 7 CYC C 1 200 200 CYC CYC . 
FB 7 CYC D 1 200 200 CYC CYC . 
GB 7 CYC E 1 200 200 CYC CYC . 
HB 7 CYC F 1 200 200 CYC CYC . 
IB 7 CYC G 1 200 200 CYC CYC . 
JB 7 CYC H 1 200 200 CYC CYC . 
KB 7 CYC I 1 200 200 CYC CYC . 
LB 7 CYC J 1 200 200 CYC CYC . 
MB 7 CYC K 1 200 200 CYC CYC . 
NB 7 CYC L 1 200 200 CYC CYC . 
OB 7 CYC N 1 200 200 CYC CYC . 
PB 7 CYC O 1 200 200 CYC CYC . 
QB 7 CYC P 1 200 200 CYC CYC . 
RB 7 CYC Q 1 200 200 CYC CYC . 
SB 7 CYC R 1 200 200 CYC CYC . 
TB 7 CYC S 1 200 200 CYC CYC . 
UB 7 CYC T 1 200 200 CYC CYC . 
VB 7 CYC U 1 200 200 CYC CYC . 
WB 7 CYC V 1 200 200 CYC CYC . 
XB 7 CYC W 1 200 200 CYC CYC . 
YB 7 CYC X 1 200 200 CYC CYC . 
ZB 7 CYC Y 1 200 200 CYC CYC . 
AC 7 CYC a 1 200 200 CYC CYC . 
BC 7 CYC b 1 200 200 CYC CYC . 
CC 7 CYC c 1 200 200 CYC CYC . 
DC 7 CYC d 1 200 200 CYC CYC . 
EC 7 CYC e 1 200 200 CYC CYC . 
FC 7 CYC f 1 200 200 CYC CYC . 
GC 7 CYC g 1 200 200 CYC CYC . 
HC 7 CYC h 1 200 200 CYC CYC . 
IC 7 CYC i 1 200 200 CYC CYC . 
JC 7 CYC j 1 200 200 CYC CYC . 
KC 7 CYC k 1 200 200 CYC CYC . 
LC 7 CYC l 1 200 200 CYC CYC . 
MC 7 CYC n 1 200 200 CYC CYC . 
NC 7 CYC o 1 200 200 CYC CYC . 
OC 7 CYC p 1 200 200 CYC CYC . 
PC 7 CYC q 1 200 200 CYC CYC . 
QC 7 CYC r 1 200 200 CYC CYC . 
RC 7 CYC s 1 200 200 CYC CYC . 
SC 7 CYC t 1 200 200 CYC CYC . 
TC 7 CYC u 1 200 200 CYC CYC . 
UC 7 CYC v 1 200 200 CYC CYC . 
VC 7 CYC w 1 200 200 CYC CYC . 
WC 7 CYC x 1 200 200 CYC CYC . 
XC 7 CYC y 1 200 200 CYC CYC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA CYC . . . AC 7 426.769 287.601 343.247 1 25.72 ? CHA CYC 200 a 1 
HETATM 2 N NA CYC . . . AC 7 424.251 287.748 342.605 1 25.72 ? NA CYC 200 a 1 
HETATM 3 C C1A CYC . . . AC 7 425.25 287.894 343.449 1 25.72 ? C1A CYC 200 a 1 
HETATM 4 C C2A CYC . . . AC 7 424.755 288.395 344.627 1 25.72 ? C2A CYC 200 a 1 
HETATM 5 C C3A CYC . . . AC 7 423.387 288.543 344.466 1 25.72 ? C3A CYC 200 a 1 
HETATM 6 C C4A CYC . . . AC 7 423.11 288.115 343.163 1 25.72 ? C4A CYC 200 a 1 
HETATM 7 C CMA CYC . . . AC 7 422.44 289.078 345.57 1 25.72 ? CMA CYC 200 a 1 
HETATM 8 C CAA CYC . . . AC 7 425.589 288.697 345.885 1 25.72 ? CAA CYC 200 a 1 
HETATM 9 C CBA CYC . . . AC 7 425.593 287.461 346.858 1 25.72 ? CBA CYC 200 a 1 
HETATM 10 C CGA CYC . . . AC 7 426.208 286.162 346.189 1 25.72 ? CGA CYC 200 a 1 
HETATM 11 O O1A CYC . . . AC 7 427.457 286.091 345.954 1 25.72 ? O1A CYC 200 a 1 
HETATM 12 O O2A CYC . . . AC 7 425.447 285.187 345.884 1 25.72 ? O2A CYC 200 a 1 
HETATM 13 C CHB CYC . . . AC 7 421.687 288.072 342.397 1 25.72 ? CHB CYC 200 a 1 
HETATM 14 N NB CYC . . . AC 7 420.572 286.985 344.391 1 25.72 ? NB CYC 200 a 1 
HETATM 15 C C1B CYC . . . AC 7 420.539 287.498 343.194 1 25.72 ? C1B CYC 200 a 1 
HETATM 16 C C2B CYC . . . AC 7 419.256 287.432 342.746 1 25.72 ? C2B CYC 200 a 1 
HETATM 17 C C3B CYC . . . AC 7 418.512 286.846 343.762 1 25.72 ? C3B CYC 200 a 1 
HETATM 18 C C4B CYC . . . AC 7 419.384 286.587 344.777 1 25.72 ? C4B CYC 200 a 1 
HETATM 19 C CMB CYC . . . AC 7 418.761 287.906 341.384 1 25.72 ? CMB CYC 200 a 1 
HETATM 20 C CAB CYC . . . AC 7 416.963 286.535 343.753 1 25.72 ? CAB CYC 200 a 1 
HETATM 21 C CBB CYC . . . AC 7 416.697 285.06 343.763 1 25.72 ? CBB CYC 200 a 1 
HETATM 22 O OB CYC . . . AC 7 419.067 285.984 346.048 1 25.72 ? OB CYC 200 a 1 
HETATM 23 N NC CYC . . . AC 7 428.54 287.297 336.822 1 25.72 ? NC CYC 200 a 1 
HETATM 24 C C1C CYC . . . AC 7 428.765 287.599 335.356 1 25.72 ? C1C CYC 200 a 1 
HETATM 25 C C2C CYC . . . AC 7 427.289 287.958 334.768 1 25.72 ? C2C CYC 200 a 1 
HETATM 26 C C3C CYC . . . AC 7 426.48 287.995 335.743 1 25.72 ? C3C CYC 200 a 1 
HETATM 27 C C4C CYC . . . AC 7 427.376 287.835 337.165 1 25.72 ? C4C CYC 200 a 1 
HETATM 28 C CMC CYC . . . AC 7 427.388 289.388 334.045 1 25.72 ? CMC CYC 200 a 1 
HETATM 29 C CAC CYC . . . AC 7 425.402 286.832 335.665 1 25.72 ? CAC CYC 200 a 1 
HETATM 30 C CBC CYC . . . AC 7 424.591 286.764 334.349 1 25.72 ? CBC CYC 200 a 1 
HETATM 31 O OC CYC . . . AC 7 429.525 288.587 335.261 1 25.72 ? OC CYC 200 a 1 
HETATM 32 C CHD CYC . . . AC 7 426.662 286.916 338.116 1 25.72 ? CHD CYC 200 a 1 
HETATM 33 N ND CYC . . . AC 7 426.489 287.324 340.641 1 25.72 ? ND CYC 200 a 1 
HETATM 34 C C1D CYC . . . AC 7 427.234 286.98 339.601 1 25.72 ? C1D CYC 200 a 1 
HETATM 35 C C2D CYC . . . AC 7 428.535 286.685 340.064 1 25.72 ? C2D CYC 200 a 1 
HETATM 36 C C3D CYC . . . AC 7 428.512 286.884 341.436 1 25.72 ? C3D CYC 200 a 1 
HETATM 37 C C4D CYC . . . AC 7 427.22 287.281 341.75 1 25.72 ? C4D CYC 200 a 1 
HETATM 38 C CMD CYC . . . AC 7 429.818 286.234 339.302 1 25.72 ? CMD CYC 200 a 1 
HETATM 39 C CAD CYC . . . AC 7 429.684 286.718 342.41 1 25.72 ? CAD CYC 200 a 1 
HETATM 40 C CBD CYC . . . AC 7 430.288 288.108 342.701 1 25.72 ? CBD CYC 200 a 1 
HETATM 41 C CGD CYC . . . AC 7 431.399 288.091 343.76 1 25.72 ? CGD CYC 200 a 1 
HETATM 42 O O1D CYC . . . AC 7 432.21 289.058 343.828 1 25.72 ? O1D CYC 200 a 1 
HETATM 43 O O2D CYC . . . AC 7 431.506 287.13 344.542 1 25.72 ? O2D CYC 200 a 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    83 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           43 
#