data_8IML
#
_model_server_result.job_id            oKU7WbwwfM6ZpDz9xRVbDQ 
_model_server_result.datetime_utc      '2024-12-18 02:00:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iml 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DC","auth_seq_id":200}' 
#
_entry.id    8IML 
#
_exptl.entry_id    8IML 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOCYANOBILIN 
_entity.pdbx_number_of_molecules    54 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    41-meric 
_pdbx_struct_assembly.oligomeric_count      41 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 PA N N 
? 6 QA N N 
? 6 RA N N 
? 6 SA N N 
? 6 TA N N 
? 6 UA N N 
? 6 VA N N 
? 6 WA N N 
? 6 XA N N 
? 6 YA N N 
? 6 ZA N N 
? 6 AB N N 
? 6 BB N N 
? 6 CB N N 
? 6 DB N N 
? 6 EB N N 
? 6 FB N N 
? 6 GB N N 
? 6 HB N N 
? 6 IB N N 
? 6 JB N N 
? 6 KB N N 
? 6 LB N N 
? 6 MB N N 
? 6 NB N N 
? 6 OB N N 
? 6 PB N N 
? 6 QB N N 
? 6 RB N N 
? 6 SB N N 
? 6 TB N N 
? 6 UB N N 
? 6 VB N N 
? 6 WB N N 
? 6 XB N N 
? 6 YB N N 
? 6 ZB N N 
? 6 AC N N 
? 6 BC N N 
? 6 CC N N 
? 6 DC N N 
? 6 EC N N 
? 6 FC N N 
? 6 GC N N 
? 6 HC N N 
? 6 IC N N 
? 6 JC N N 
? 6 KC N N 
? 6 LC N N 
? 6 MC N N 
? 6 NC N N 
? 6 OC N N 
? 6 PC N N 
? 6 QC N N 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                CYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOCYANOBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A CYC doub 70 z n 
CHA C4D CYC sing 71 n n 
CHA HHA CYC sing 72 n n 
NA C1A CYC sing 73 n n 
NA C4A CYC doub 74 n n 
C1A C2A CYC sing 75 n n 
C2A C3A CYC doub 76 n n 
C2A CAA CYC sing 77 n n 
C3A C4A CYC sing 78 n n 
C3A CMA CYC sing 79 n n 
C4A CHB CYC sing 80 n n 
CMA HMA1 CYC sing 81 n n 
CMA HMA2 CYC sing 82 n n 
CMA HMA3 CYC sing 83 n n 
CAA CBA CYC sing 84 n n 
CAA HAA1 CYC sing 85 n n 
CAA HAA2 CYC sing 86 n n 
CBA CGA CYC sing 87 n n 
CBA HBA1 CYC sing 88 n n 
CBA HBA2 CYC sing 89 n n 
CGA O1A CYC doub 90 n n 
CGA O2A CYC sing 91 n n 
O2A H2A CYC sing 92 n n 
CHB C1B CYC doub 93 z n 
CHB HHB CYC sing 94 n n 
NB C1B CYC sing 95 n n 
NB C4B CYC sing 96 n n 
NB HB CYC sing 97 n n 
C1B C2B CYC sing 98 n n 
C2B C3B CYC doub 99 n n 
C2B CMB CYC sing 100 n n 
C3B C4B CYC sing 101 n n 
C3B CAB CYC sing 102 n n 
C4B OB CYC doub 103 n n 
CMB HMB1 CYC sing 104 n n 
CMB HMB2 CYC sing 105 n n 
CMB HMB3 CYC sing 106 n n 
CAB CBB CYC sing 107 n n 
CAB HAB1 CYC sing 108 n n 
CAB HAB2 CYC sing 109 n n 
CBB HBB1 CYC sing 110 n n 
CBB HBB2 CYC sing 111 n n 
CBB HBB3 CYC sing 112 n n 
NC C1C CYC sing 113 n n 
NC C4C CYC sing 114 n n 
NC HC CYC sing 115 n n 
C1C C2C CYC sing 116 n n 
C1C OC CYC doub 117 n n 
C2C C3C CYC sing 118 n n 
C2C CMC CYC sing 119 n n 
C2C H2C CYC sing 120 n n 
C3C C4C CYC sing 121 n n 
C3C CAC CYC sing 122 n n 
C3C H3C CYC sing 123 n n 
C4C CHD CYC doub 124 z n 
CMC HMC1 CYC sing 125 n n 
CMC HMC2 CYC sing 126 n n 
CMC HMC3 CYC sing 127 n n 
CAC CBC CYC sing 128 n n 
CAC HAC1 CYC sing 129 n n 
CAC HAC2 CYC sing 130 n n 
CBC HBC1 CYC sing 131 n n 
CBC HBC2 CYC sing 132 n n 
CBC HBC3 CYC sing 133 n n 
CHD C1D CYC sing 134 n n 
CHD HHD CYC sing 135 n n 
ND C1D CYC sing 136 n y 
ND C4D CYC sing 137 n y 
ND HD CYC sing 138 n n 
C1D C2D CYC doub 139 n y 
C2D C3D CYC sing 140 n y 
C2D CMD CYC sing 141 n n 
C3D C4D CYC doub 142 n y 
C3D CAD CYC sing 143 n n 
CMD HMD1 CYC sing 144 n n 
CMD HMD2 CYC sing 145 n n 
CMD HMD3 CYC sing 146 n n 
CAD CBD CYC sing 147 n n 
CAD HAD1 CYC sing 148 n n 
CAD HAD2 CYC sing 149 n n 
CBD CGD CYC sing 150 n n 
CBD HBD1 CYC sing 151 n n 
CBD HBD2 CYC sing 152 n n 
CGD O1D CYC doub 153 n n 
CGD O2D CYC sing 154 n n 
O2D H2D CYC sing 155 n n 
#
_atom_sites.entry_id                     8IML 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
PA 6 CYC 3 1 601 200 CYC CYC . 
QA 6 CYC A 1 200 200 CYC CYC . 
RA 6 CYC A 1 201 201 CYC CYC . 
SA 6 CYC B 1 200 200 CYC CYC . 
TA 6 CYC B 1 201 201 CYC CYC . 
UA 6 CYC C 1 200 200 CYC CYC . 
VA 6 CYC D 1 200 200 CYC CYC . 
WA 6 CYC E 1 200 200 CYC CYC . 
XA 6 CYC F 1 200 200 CYC CYC . 
YA 6 CYC G 1 200 200 CYC CYC . 
ZA 6 CYC G 1 201 201 CYC CYC . 
AB 6 CYC H 1 200 200 CYC CYC . 
BB 6 CYC I 1 200 200 CYC CYC . 
CB 6 CYC I 1 201 201 CYC CYC . 
DB 6 CYC J 1 200 200 CYC CYC . 
EB 6 CYC K 1 200 200 CYC CYC . 
FB 6 CYC K 1 201 201 CYC CYC . 
GB 6 CYC L 1 201 201 CYC CYC . 
HB 6 CYC N 1 200 200 CYC CYC . 
IB 6 CYC O 1 200 200 CYC CYC . 
JB 6 CYC P 1 200 200 CYC CYC . 
KB 6 CYC Q 1 200 200 CYC CYC . 
LB 6 CYC R 1 200 200 CYC CYC . 
MB 6 CYC S 1 200 200 CYC CYC . 
NB 6 CYC T 1 200 200 CYC CYC . 
OB 6 CYC T 1 201 201 CYC CYC . 
PB 6 CYC U 1 201 201 CYC CYC . 
QB 6 CYC V 1 200 200 CYC CYC . 
RB 6 CYC V 1 201 201 CYC CYC . 
SB 6 CYC W 1 200 200 CYC CYC . 
TB 6 CYC W 1 201 201 CYC CYC . 
UB 6 CYC X 1 200 200 CYC CYC . 
VB 6 CYC X 1 201 201 CYC CYC . 
WB 6 CYC Y 1 200 200 CYC CYC . 
XB 6 CYC Y 1 201 201 CYC CYC . 
YB 6 CYC Z 1 200 200 CYC CYC . 
ZB 6 CYC 4 1 301 200 CYC CYC . 
AC 6 CYC a 1 200 200 CYC CYC . 
BC 6 CYC b 1 200 200 CYC CYC . 
CC 6 CYC c 1 200 200 CYC CYC . 
DC 6 CYC d 1 200 200 CYC CYC . 
EC 6 CYC e 1 200 200 CYC CYC . 
FC 6 CYC f 1 200 200 CYC CYC . 
GC 6 CYC g 1 200 200 CYC CYC . 
HC 6 CYC g 1 201 201 CYC CYC . 
IC 6 CYC h 1 200 200 CYC CYC . 
JC 6 CYC h 1 201 201 CYC CYC . 
KC 6 CYC i 1 201 201 CYC CYC . 
LC 6 CYC j 1 200 200 CYC CYC . 
MC 6 CYC j 1 201 201 CYC CYC . 
NC 6 CYC k 1 200 200 CYC CYC . 
OC 6 CYC k 1 201 201 CYC CYC . 
PC 6 CYC l 1 200 200 CYC CYC . 
QC 6 CYC l 1 201 201 CYC CYC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA CYC . . . DC 6 536.832 420.04 398.551 1 28.88 ? CHA CYC 200 d 1 
HETATM 2 N NA CYC . . . DC 6 538.413 418.185 397.685 1 28.88 ? NA CYC 200 d 1 
HETATM 3 C C1A CYC . . . DC 6 537.436 419.054 397.504 1 28.88 ? C1A CYC 200 d 1 
HETATM 4 C C2A CYC . . . DC 6 536.996 418.961 396.201 1 28.88 ? C2A CYC 200 d 1 
HETATM 5 C C3A CYC . . . DC 6 537.777 417.98 395.599 1 28.88 ? C3A CYC 200 d 1 
HETATM 6 C C4A CYC . . . DC 6 538.652 417.504 396.577 1 28.88 ? C4A CYC 200 d 1 
HETATM 7 C CMA CYC . . . DC 6 537.632 417.548 394.125 1 28.88 ? CMA CYC 200 d 1 
HETATM 8 C CAA CYC . . . DC 6 535.866 419.798 395.557 1 28.88 ? CAA CYC 200 d 1 
HETATM 9 C CBA CYC . . . DC 6 534.562 418.962 395.255 1 28.88 ? CBA CYC 200 d 1 
HETATM 10 C CGA CYC . . . DC 6 533.579 418.87 396.497 1 28.88 ? CGA CYC 200 d 1 
HETATM 11 O O1A CYC . . . DC 6 532.558 419.633 396.563 1 28.88 ? O1A CYC 200 d 1 
HETATM 12 O O2A CYC . . . DC 6 533.804 418.024 397.429 1 28.88 ? O2A CYC 200 d 1 
HETATM 13 C CHB CYC . . . DC 6 539.812 416.375 396.477 1 28.88 ? CHB CYC 200 d 1 
HETATM 14 N NB CYC . . . DC 6 538.463 414.79 395.012 1 28.88 ? NB CYC 200 d 1 
HETATM 15 C C1B CYC . . . DC 6 539.51 415.09 395.728 1 28.88 ? C1B CYC 200 d 1 
HETATM 16 C C2B CYC . . . DC 6 540.349 414.015 395.693 1 28.88 ? C2B CYC 200 d 1 
HETATM 17 C C3B CYC . . . DC 6 539.748 413.049 394.909 1 28.88 ? C3B CYC 200 d 1 
HETATM 18 C C4B CYC . . . DC 6 538.562 413.581 394.499 1 28.88 ? C4B CYC 200 d 1 
HETATM 19 C CMB CYC . . . DC 6 541.699 413.892 396.384 1 28.88 ? CMB CYC 200 d 1 
HETATM 20 C CAB CYC . . . DC 6 540.361 411.625 394.599 1 28.88 ? CAB CYC 200 d 1 
HETATM 21 C CBB CYC . . . DC 6 540.052 411.096 393.23 1 28.88 ? CBB CYC 200 d 1 
HETATM 22 O OB CYC . . . DC 6 537.575 412.946 393.659 1 28.88 ? OB CYC 200 d 1 
HETATM 23 N NC CYC . . . DC 6 540.794 420.766 403.997 1 28.88 ? NC CYC 200 d 1 
HETATM 24 C C1C CYC . . . DC 6 541.795 421.222 405.045 1 28.88 ? C1C CYC 200 d 1 
HETATM 25 C C2C CYC . . . DC 6 543.24 420.778 404.434 1 28.88 ? C2C CYC 200 d 1 
HETATM 26 C C3C CYC . . . DC 6 543.05 420.536 403.209 1 28.88 ? C3C CYC 200 d 1 
HETATM 27 C C4C CYC . . . DC 6 541.459 420.959 402.862 1 28.88 ? C4C CYC 200 d 1 
HETATM 28 C CMC CYC . . . DC 6 544.256 422.01 404.588 1 28.88 ? CMC CYC 200 d 1 
HETATM 29 C CAC CYC . . . DC 6 543.291 419.008 402.898 1 28.88 ? CAC CYC 200 d 1 
HETATM 30 C CBC CYC . . . DC 6 544.76 418.6 403.163 1 28.88 ? CBC CYC 200 d 1 
HETATM 31 O OC CYC . . . DC 6 541.756 422.467 405.153 1 28.88 ? OC CYC 200 d 1 
HETATM 32 C CHD CYC . . . DC 6 540.895 420.079 401.78 1 28.88 ? CHD CYC 200 d 1 
HETATM 33 N ND CYC . . . DC 6 538.96 419.88 400.121 1 28.88 ? ND CYC 200 d 1 
HETATM 34 C C1D CYC . . . DC 6 539.56 420.598 401.068 1 28.88 ? C1D CYC 200 d 1 
HETATM 35 C C2D CYC . . . DC 6 538.807 421.785 401.253 1 28.88 ? C2D CYC 200 d 1 
HETATM 36 C C3D CYC . . . DC 6 537.742 421.705 400.368 1 28.88 ? C3D CYC 200 d 1 
HETATM 37 C C4D CYC . . . DC 6 537.874 420.51 399.678 1 28.88 ? C4D CYC 200 d 1 
HETATM 38 C CMD CYC . . . DC 6 538.988 423.016 402.204 1 28.88 ? CMD CYC 200 d 1 
HETATM 39 C CAD CYC . . . DC 6 536.641 422.748 400.172 1 28.88 ? CAD CYC 200 d 1 
HETATM 40 C CBD CYC . . . DC 6 537.039 423.683 399.019 1 28.88 ? CBD CYC 200 d 1 
HETATM 41 C CGD CYC . . . DC 6 535.836 424.409 398.416 1 28.88 ? CGD CYC 200 d 1 
HETATM 42 O O1D CYC . . . DC 6 536.033 425.38 397.633 1 28.88 ? O1D CYC 200 d 1 
HETATM 43 O O2D CYC . . . DC 6 534.685 424.042 398.701 1 28.88 ? O2D CYC 200 d 1 
#
_model_server_stats.io_time_ms              116 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#