data_8IMN
#
_model_server_result.job_id            hEWnEZ0Svdwq8OjJFNwe9A 
_model_server_result.datetime_utc      '2024-11-23 22:29:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8imn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"YB","auth_seq_id":201}' 
#
_entry.id    8IMN 
#
_exptl.entry_id    8IMN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOCYANOBILIN 
_entity.pdbx_number_of_molecules    54 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    40-meric 
_pdbx_struct_assembly.oligomeric_count      40 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 OA N N 
? 5 PA N N 
? 5 QA N N 
? 5 RA N N 
? 5 SA N N 
? 5 TA N N 
? 5 UA N N 
? 5 VA N N 
? 5 WA N N 
? 5 XA N N 
? 5 YA N N 
? 5 ZA N N 
? 5 AB N N 
? 5 BB N N 
? 5 CB N N 
? 5 DB N N 
? 5 EB N N 
? 5 FB N N 
? 5 GB N N 
? 5 HB N N 
? 5 IB N N 
? 5 JB N N 
? 5 KB N N 
? 5 LB N N 
? 5 MB N N 
? 5 NB N N 
? 5 OB N N 
? 5 PB N N 
? 5 QB N N 
? 5 RB N N 
? 5 SB N N 
? 5 TB N N 
? 5 UB N N 
? 5 VB N N 
? 5 WB N N 
? 5 XB N N 
? 5 YB N N 
? 5 ZB N N 
? 5 AC N N 
? 5 BC N N 
? 5 CC N N 
? 5 DC N N 
? 5 EC N N 
? 5 FC N N 
? 5 GC N N 
? 5 HC N N 
? 5 IC N N 
? 5 JC N N 
? 5 KC N N 
? 5 LC N N 
? 5 MC N N 
? 5 NC N N 
? 5 OC N N 
? 5 PC N N 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                CYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOCYANOBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A CYC doub 70 z n 
CHA C4D CYC sing 71 n n 
CHA HHA CYC sing 72 n n 
NA C1A CYC sing 73 n n 
NA C4A CYC doub 74 n n 
C1A C2A CYC sing 75 n n 
C2A C3A CYC doub 76 n n 
C2A CAA CYC sing 77 n n 
C3A C4A CYC sing 78 n n 
C3A CMA CYC sing 79 n n 
C4A CHB CYC sing 80 n n 
CMA HMA1 CYC sing 81 n n 
CMA HMA2 CYC sing 82 n n 
CMA HMA3 CYC sing 83 n n 
CAA CBA CYC sing 84 n n 
CAA HAA1 CYC sing 85 n n 
CAA HAA2 CYC sing 86 n n 
CBA CGA CYC sing 87 n n 
CBA HBA1 CYC sing 88 n n 
CBA HBA2 CYC sing 89 n n 
CGA O1A CYC doub 90 n n 
CGA O2A CYC sing 91 n n 
O2A H2A CYC sing 92 n n 
CHB C1B CYC doub 93 z n 
CHB HHB CYC sing 94 n n 
NB C1B CYC sing 95 n n 
NB C4B CYC sing 96 n n 
NB HB CYC sing 97 n n 
C1B C2B CYC sing 98 n n 
C2B C3B CYC doub 99 n n 
C2B CMB CYC sing 100 n n 
C3B C4B CYC sing 101 n n 
C3B CAB CYC sing 102 n n 
C4B OB CYC doub 103 n n 
CMB HMB1 CYC sing 104 n n 
CMB HMB2 CYC sing 105 n n 
CMB HMB3 CYC sing 106 n n 
CAB CBB CYC sing 107 n n 
CAB HAB1 CYC sing 108 n n 
CAB HAB2 CYC sing 109 n n 
CBB HBB1 CYC sing 110 n n 
CBB HBB2 CYC sing 111 n n 
CBB HBB3 CYC sing 112 n n 
NC C1C CYC sing 113 n n 
NC C4C CYC sing 114 n n 
NC HC CYC sing 115 n n 
C1C C2C CYC sing 116 n n 
C1C OC CYC doub 117 n n 
C2C C3C CYC sing 118 n n 
C2C CMC CYC sing 119 n n 
C2C H2C CYC sing 120 n n 
C3C C4C CYC sing 121 n n 
C3C CAC CYC sing 122 n n 
C3C H3C CYC sing 123 n n 
C4C CHD CYC doub 124 z n 
CMC HMC1 CYC sing 125 n n 
CMC HMC2 CYC sing 126 n n 
CMC HMC3 CYC sing 127 n n 
CAC CBC CYC sing 128 n n 
CAC HAC1 CYC sing 129 n n 
CAC HAC2 CYC sing 130 n n 
CBC HBC1 CYC sing 131 n n 
CBC HBC2 CYC sing 132 n n 
CBC HBC3 CYC sing 133 n n 
CHD C1D CYC sing 134 n n 
CHD HHD CYC sing 135 n n 
ND C1D CYC sing 136 n y 
ND C4D CYC sing 137 n y 
ND HD CYC sing 138 n n 
C1D C2D CYC doub 139 n y 
C2D C3D CYC sing 140 n y 
C2D CMD CYC sing 141 n n 
C3D C4D CYC doub 142 n y 
C3D CAD CYC sing 143 n n 
CMD HMD1 CYC sing 144 n n 
CMD HMD2 CYC sing 145 n n 
CMD HMD3 CYC sing 146 n n 
CAD CBD CYC sing 147 n n 
CAD HAD1 CYC sing 148 n n 
CAD HAD2 CYC sing 149 n n 
CBD CGD CYC sing 150 n n 
CBD HBD1 CYC sing 151 n n 
CBD HBD2 CYC sing 152 n n 
CGD O1D CYC doub 153 n n 
CGD O2D CYC sing 154 n n 
O2D H2D CYC sing 155 n n 
#
_atom_sites.entry_id                     8IMN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
OA 5 CYC 5 1 1201 200 CYC CYC . 
PA 5 CYC 5 1 1202 200 CYC CYC . 
QA 5 CYC A 1 200 200 CYC CYC . 
RA 5 CYC B 1 200 200 CYC CYC . 
SA 5 CYC C 1 200 200 CYC CYC . 
TA 5 CYC D 1 200 200 CYC CYC . 
UA 5 CYC E 1 200 200 CYC CYC . 
VA 5 CYC F 1 200 200 CYC CYC . 
WA 5 CYC G 1 200 200 CYC CYC . 
XA 5 CYC G 1 201 201 CYC CYC . 
YA 5 CYC H 1 200 200 CYC CYC . 
ZA 5 CYC H 1 201 201 CYC CYC . 
AB 5 CYC I 1 200 200 CYC CYC . 
BB 5 CYC I 1 201 201 CYC CYC . 
CB 5 CYC J 1 200 200 CYC CYC . 
DB 5 CYC J 1 201 201 CYC CYC . 
EB 5 CYC K 1 200 200 CYC CYC . 
FB 5 CYC K 1 201 201 CYC CYC . 
GB 5 CYC L 1 201 201 CYC CYC . 
HB 5 CYC N 1 200 200 CYC CYC . 
IB 5 CYC O 1 200 200 CYC CYC . 
JB 5 CYC P 1 200 200 CYC CYC . 
KB 5 CYC Q 1 200 200 CYC CYC . 
LB 5 CYC R 1 200 200 CYC CYC . 
MB 5 CYC S 1 200 200 CYC CYC . 
NB 5 CYC T 1 200 200 CYC CYC . 
OB 5 CYC T 1 201 201 CYC CYC . 
PB 5 CYC U 1 200 200 CYC CYC . 
QB 5 CYC U 1 201 201 CYC CYC . 
RB 5 CYC V 1 200 200 CYC CYC . 
SB 5 CYC V 1 201 201 CYC CYC . 
TB 5 CYC W 1 200 200 CYC CYC . 
UB 5 CYC W 1 201 201 CYC CYC . 
VB 5 CYC X 1 200 200 CYC CYC . 
WB 5 CYC X 1 201 201 CYC CYC . 
XB 5 CYC Y 1 200 200 CYC CYC . 
YB 5 CYC Y 1 201 201 CYC CYC . 
ZB 5 CYC a 1 200 200 CYC CYC . 
AC 5 CYC b 1 200 200 CYC CYC . 
BC 5 CYC c 1 200 200 CYC CYC . 
CC 5 CYC d 1 200 200 CYC CYC . 
DC 5 CYC e 1 200 200 CYC CYC . 
EC 5 CYC f 1 200 200 CYC CYC . 
FC 5 CYC g 1 200 200 CYC CYC . 
GC 5 CYC g 1 201 201 CYC CYC . 
HC 5 CYC h 1 200 200 CYC CYC . 
IC 5 CYC h 1 201 201 CYC CYC . 
JC 5 CYC i 1 200 200 CYC CYC . 
KC 5 CYC i 1 201 201 CYC CYC . 
LC 5 CYC j 1 200 200 CYC CYC . 
MC 5 CYC j 1 201 201 CYC CYC . 
NC 5 CYC k 1 200 200 CYC CYC . 
OC 5 CYC k 1 201 201 CYC CYC . 
PC 5 CYC l 1 201 201 CYC CYC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA CYC . . . YB 5 384.077 217.436 242.605 1 87.02 ? CHA CYC 201 Y 1 
HETATM 2 N NA CYC . . . YB 5 382.669 218.944 241.036 1 87.02 ? NA CYC 201 Y 1 
HETATM 3 C C1A CYC . . . YB 5 383.586 218.782 241.973 1 87.02 ? C1A CYC 201 Y 1 
HETATM 4 C C2A CYC . . . YB 5 384.072 220.028 242.32 1 87.02 ? C2A CYC 201 Y 1 
HETATM 5 C C3A CYC . . . YB 5 383.386 220.954 241.532 1 87.02 ? C3A CYC 201 Y 1 
HETATM 6 C C4A CYC . . . YB 5 382.512 220.223 240.726 1 87.02 ? C4A CYC 201 Y 1 
HETATM 7 C CMA CYC . . . YB 5 383.606 222.483 241.59 1 87.02 ? CMA CYC 201 Y 1 
HETATM 8 C CAA CYC . . . YB 5 385.164 220.324 243.38 1 87.02 ? CAA CYC 201 Y 1 
HETATM 9 C CBA CYC . . . YB 5 386.626 220.125 242.816 1 87.02 ? CBA CYC 201 Y 1 
HETATM 10 C CGA CYC . . . YB 5 387.149 218.627 242.946 1 87.02 ? CGA CYC 201 Y 1 
HETATM 11 O O1A CYC . . . YB 5 387.284 217.905 241.901 1 87.02 ? O1A CYC 201 Y 1 
HETATM 12 O O2A CYC . . . YB 5 387.433 218.142 244.096 1 87.02 ? O2A CYC 201 Y 1 
HETATM 13 C CHB CYC . . . YB 5 381.44 220.719 239.61 1 87.02 ? CHB CYC 201 Y 1 
HETATM 14 N NB CYC . . . YB 5 382.702 222.7 238.617 1 87.02 ? NB CYC 201 Y 1 
HETATM 15 C C1B CYC . . . YB 5 381.604 222.068 238.939 1 87.02 ? C1B CYC 201 Y 1 
HETATM 16 C C2B CYC . . . YB 5 380.545 222.828 238.541 1 87.02 ? C2B CYC 201 Y 1 
HETATM 17 C C3B CYC . . . YB 5 381.062 223.976 237.962 1 87.02 ? C3B CYC 201 Y 1 
HETATM 18 C C4B CYC . . . YB 5 382.42 223.854 238.038 1 87.02 ? C4B CYC 201 Y 1 
HETATM 19 C CMB CYC . . . YB 5 379.08 222.455 238.715 1 87.02 ? CMB CYC 201 Y 1 
HETATM 20 C CAB CYC . . . YB 5 380.251 225.193 237.355 1 87.02 ? CAB CYC 201 Y 1 
HETATM 21 C CBB CYC . . . YB 5 379.43 224.84 236.143 1 87.02 ? CBB CYC 201 Y 1 
HETATM 22 O OB CYC . . . YB 5 383.38 224.823 237.558 1 87.02 ? OB CYC 201 Y 1 
HETATM 23 N NC CYC . . . YB 5 379.903 212.511 242.97 1 87.02 ? NC CYC 201 Y 1 
HETATM 24 C C1C CYC . . . YB 5 379.304 211.316 242.238 1 87.02 ? C1C CYC 201 Y 1 
HETATM 25 C C2C CYC . . . YB 5 377.944 211.93 241.574 1 87.02 ? C2C CYC 201 Y 1 
HETATM 26 C C3C CYC . . . YB 5 378.132 213.178 241.464 1 87.02 ? C3C CYC 201 Y 1 
HETATM 27 C C4C CYC . . . YB 5 379.641 213.524 242.142 1 87.02 ? C4C CYC 201 Y 1 
HETATM 28 C CMC CYC . . . YB 5 377.723 211.285 240.121 1 87.02 ? CMC CYC 201 Y 1 
HETATM 29 C CAC CYC . . . YB 5 376.994 214.002 242.204 1 87.02 ? CAC CYC 201 Y 1 
HETATM 30 C CBC CYC . . . YB 5 375.62 213.285 242.275 1 87.02 ? CBC CYC 201 Y 1 
HETATM 31 O OC CYC . . . YB 5 379.016 210.393 243.036 1 87.02 ? OC CYC 201 Y 1 
HETATM 32 C CHD CYC . . . YB 5 379.571 214.825 242.897 1 87.02 ? CHD CYC 201 Y 1 
HETATM 33 N ND CYC . . . YB 5 381.732 216.236 242.526 1 87.02 ? ND CYC 201 Y 1 
HETATM 34 C C1D CYC . . . YB 5 381.026 215.369 243.243 1 87.02 ? C1D CYC 201 Y 1 
HETATM 35 C C2D CYC . . . YB 5 381.769 215.016 244.377 1 87.02 ? C2D CYC 201 Y 1 
HETATM 36 C C3D CYC . . . YB 5 382.974 215.717 244.296 1 87.02 ? C3D CYC 201 Y 1 
HETATM 37 C C4D CYC . . . YB 5 382.901 216.47 243.12 1 87.02 ? C4D CYC 201 Y 1 
HETATM 38 C CMD CYC . . . YB 5 381.341 214.028 245.507 1 87.02 ? CMD CYC 201 Y 1 
HETATM 39 C CAD CYC . . . YB 5 384.142 215.683 245.291 1 87.02 ? CAD CYC 201 Y 1 
HETATM 40 C CBD CYC . . . YB 5 384.109 216.877 246.267 1 87.02 ? CBD CYC 201 Y 1 
HETATM 41 C CGD CYC . . . YB 5 383.258 216.588 247.514 1 87.02 ? CGD CYC 201 Y 1 
HETATM 42 O O1D CYC . . . YB 5 383.121 215.4 247.927 1 87.02 ? O1D CYC 201 Y 1 
HETATM 43 O O2D CYC . . . YB 5 382.702 217.522 248.118 1 87.02 ? O2D CYC 201 Y 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    71 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#