data_8IMX # _model_server_result.job_id nwvP8vsUvw0CD2TeS70lqg _model_server_result.datetime_utc '2025-09-25 09:52:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8imx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":701}' # _entry.id 8IMX # _exptl.entry_id 8IMX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IMX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H NAG 1 R 1 NAG R 1802 NAG 8 n H NAG 2 R 2 NAG R 1803 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 261 G CYS 259 1_555 B SG CYS 268 G CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 C SG CYS 94 K CYS 92 1_555 E SG CYS 184 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 277 K CYS 275 1_555 C SG CYS 282 K CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 E SG CYS 197 T CYS 195 1_555 E SG CYS 274 T CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 228 T CYS 226 1_555 E SG CYS 233 T CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B ND2 ASN 205 G ASN 203 1_555 H C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 D ND2 ASN 269 S ASN 267 1_555 W C1 NAG . S NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 E ND2 ASN 329 T ASN 327 1_555 Y C1 NAG . T NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 G C SER 3 P SER 3 1_555 GA N80 80Y . P 80Y 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 GA C51 80Y . P 80Y 101 1_555 IA O53 80Y . P 80Y 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale6 HA O4 PA1 . P PA1 102 1_555 JA C80 05E . P 05E 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale7 HA C1 PA1 . P PA1 102 1_555 KA O27 81Q . P 81Q 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale8 IA C51 80Y . P 80Y 103 1_555 JA O96 05E . P 05E 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale9 H O4 NAG . R NAG 1 1_555 H C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 B OE1 GLN 357 G GLN 355 1_555 J MG MG . G MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 J MG MG . G MG 901 1_555 JA O89 05E . P 05E 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 C O ASP 81 K ASP 79 1_555 V CA CA . K CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc4 C O ILE 84 K ILE 82 1_555 V CA CA . K CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 C OE2 GLU 120 K GLU 118 1_555 V CA CA . K CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 C OD2 ASP 122 K ASP 120 1_555 V CA CA . K CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8IMX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 Y01 D 1 301 1914 Y01 Y01 . J 10 MG G 1 901 3 MG MG . K 9 Y01 G 1 902 910 Y01 Y01 . L 11 6OU G 1 903 1907 6OU PE8 . M 11 6OU G 1 904 1908 6OU PE8 . N 11 6OU G 1 905 1909 6OU PE8 . O 9 Y01 G 1 906 1910 Y01 Y01 . P 9 Y01 G 1 907 1911 Y01 Y01 . Q 9 Y01 G 1 908 1912 Y01 Y01 . R 9 Y01 G 1 909 1913 Y01 Y01 . S 9 Y01 G 1 910 1915 Y01 Y01 . T 9 Y01 G 1 911 1916 Y01 Y01 . U 12 AJP G 1 912 1801 AJP AJP . V 13 CA K 1 701 1 CA CA . W 14 NAG S 1 901 901 NAG NAG . X 15 LBN S 1 902 901 LBN PC8 . Y 14 NAG T 1 901 901 NAG NAG . Z 11 6OU U 1 701 908 6OU PE8 . AA 16 80T U 1 702 909 80T CD8 . BA 9 Y01 U 1 703 911 Y01 Y01 . CA 9 Y01 U 1 704 912 Y01 Y01 . DA 9 Y01 U 1 705 913 Y01 Y01 . EA 9 Y01 U 1 706 915 Y01 Y01 . FA 9 Y01 U 1 707 918 Y01 Y01 . GA 17 80Y P 1 101 1917 80Y 1GP . HA 18 PA1 P 1 102 1917 PA1 1GP . IA 17 80Y P 1 103 1917 80Y 1GP . JA 19 05E P 1 104 1917 05E 1GP . KA 20 81Q P 1 105 1917 81Q 1GP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 13 _atom_site.Cartn_x 123.919 _atom_site.Cartn_y 137.859 _atom_site.Cartn_z 89.511 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 701 _atom_site.auth_asym_id K _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #