data_8IMX # _model_server_result.job_id 1GvbK0AxA20YgbqYD9Etyg _model_server_result.datetime_utc '2025-09-28 09:42:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8imx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":705}' # _entry.id 8IMX # _exptl.entry_id 8IMX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IMX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 K N N ? 9 O N N ? 9 P N N ? 9 Q N N ? 9 R N N ? 9 S N N ? 9 T N N ? 9 BA N N ? 9 CA N N ? 9 DA N N ? 9 EA N N ? 9 FA N N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H NAG 1 R 1 NAG R 1802 NAG 8 n H NAG 2 R 2 NAG R 1803 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 261 G CYS 259 1_555 B SG CYS 268 G CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 C SG CYS 94 K CYS 92 1_555 E SG CYS 184 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 277 K CYS 275 1_555 C SG CYS 282 K CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 E SG CYS 197 T CYS 195 1_555 E SG CYS 274 T CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 228 T CYS 226 1_555 E SG CYS 233 T CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B ND2 ASN 205 G ASN 203 1_555 H C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 D ND2 ASN 269 S ASN 267 1_555 W C1 NAG . S NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 E ND2 ASN 329 T ASN 327 1_555 Y C1 NAG . T NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 G C SER 3 P SER 3 1_555 GA N80 80Y . P 80Y 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 GA C51 80Y . P 80Y 101 1_555 IA O53 80Y . P 80Y 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale6 HA O4 PA1 . P PA1 102 1_555 JA C80 05E . P 05E 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale7 HA C1 PA1 . P PA1 102 1_555 KA O27 81Q . P 81Q 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale8 IA C51 80Y . P 80Y 103 1_555 JA O96 05E . P 05E 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale9 H O4 NAG . R NAG 1 1_555 H C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 B OE1 GLN 357 G GLN 355 1_555 J MG MG . G MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 J MG MG . G MG 901 1_555 JA O89 05E . P 05E 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 C O ASP 81 K ASP 79 1_555 V CA CA . K CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc4 C O ILE 84 K ILE 82 1_555 V CA CA . K CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 C OE2 GLU 120 K GLU 118 1_555 V CA CA . K CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 C OD2 ASP 122 K ASP 120 1_555 V CA CA . K CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 1380 n n CBA CAB Y01 sing 1381 n n CBA CAN Y01 sing 1382 n n CAN CAJ Y01 sing 1383 n n CAJ CAO Y01 sing 1384 n n CAO CBB Y01 sing 1385 n n CBB CAC Y01 sing 1386 n n CBB CBE Y01 sing 1387 n n CBE CAP Y01 sing 1388 n n CBE CBI Y01 sing 1389 n n CAP CAQ Y01 sing 1390 n n CAQ CBG Y01 sing 1391 n n CBG CBI Y01 sing 1392 n n CBG CBD Y01 sing 1393 n n CBI CAE Y01 sing 1394 n n CBI CAU Y01 sing 1395 n n CAU CAS Y01 sing 1396 n n CAS CBF Y01 sing 1397 n n CBF CBD Y01 sing 1398 n n CBF CBH Y01 sing 1399 n n CBD CAK Y01 sing 1400 n n CAK CAI Y01 sing 1401 n n CAI CAZ Y01 doub 1402 n n CAZ CAV Y01 sing 1403 n n CAZ CBH Y01 sing 1404 n n CAV CBC Y01 sing 1405 n n CBH CAD Y01 sing 1406 n n CBH CAT Y01 sing 1407 n n CAT CAR Y01 sing 1408 n n CAR CBC Y01 sing 1409 n n CBC OAW Y01 sing 1410 n n OAW CAY Y01 sing 1411 n n CAY OAG Y01 doub 1412 n n CAY CAM Y01 sing 1413 n n CAM CAL Y01 sing 1414 n n CAL CAX Y01 sing 1415 n n CAX OAH Y01 sing 1416 n n CAX OAF Y01 doub 1417 n n CAA HAA1 Y01 sing 1418 n n CAA HAA2 Y01 sing 1419 n n CAA HAA3 Y01 sing 1420 n n CBA HBA Y01 sing 1421 n n CAB HAB1 Y01 sing 1422 n n CAB HAB2 Y01 sing 1423 n n CAB HAB3 Y01 sing 1424 n n CAN HAN1 Y01 sing 1425 n n CAN HAN2 Y01 sing 1426 n n CAJ HAJ1 Y01 sing 1427 n n CAJ HAJ2 Y01 sing 1428 n n CAO HAO1 Y01 sing 1429 n n CAO HAO2 Y01 sing 1430 n n CBB HBB Y01 sing 1431 n n CAC HAC1 Y01 sing 1432 n n CAC HAC2 Y01 sing 1433 n n CAC HAC3 Y01 sing 1434 n n CBE HBE Y01 sing 1435 n n CAP HAP1 Y01 sing 1436 n n CAP HAP2 Y01 sing 1437 n n CAQ HAQ1 Y01 sing 1438 n n CAQ HAQ2 Y01 sing 1439 n n CBG HBG Y01 sing 1440 n n CBD HBD Y01 sing 1441 n n CAE HAE1 Y01 sing 1442 n n CAE HAE2 Y01 sing 1443 n n CAE HAE3 Y01 sing 1444 n n CAU HAU1 Y01 sing 1445 n n CAU HAU2 Y01 sing 1446 n n CAS HAS1 Y01 sing 1447 n n CAS HAS2 Y01 sing 1448 n n CBF HBF Y01 sing 1449 n n CAK HAK1 Y01 sing 1450 n n CAK HAK2 Y01 sing 1451 n n CAI HAI Y01 sing 1452 n n CAV HAV1 Y01 sing 1453 n n CAV HAV2 Y01 sing 1454 n n CBC HBC Y01 sing 1455 n n CAD HAD1 Y01 sing 1456 n n CAD HAD2 Y01 sing 1457 n n CAD HAD3 Y01 sing 1458 n n CAT HAT1 Y01 sing 1459 n n CAT HAT2 Y01 sing 1460 n n CAR HAR1 Y01 sing 1461 n n CAR HAR2 Y01 sing 1462 n n CAM HAM1 Y01 sing 1463 n n CAM HAM2 Y01 sing 1464 n n CAL HAL1 Y01 sing 1465 n n CAL HAL2 Y01 sing 1466 n n OAH HAH Y01 sing 1467 n n # _atom_sites.entry_id 8IMX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 Y01 D 1 301 1914 Y01 Y01 . J 10 MG G 1 901 3 MG MG . K 9 Y01 G 1 902 910 Y01 Y01 . L 11 6OU G 1 903 1907 6OU PE8 . M 11 6OU G 1 904 1908 6OU PE8 . N 11 6OU G 1 905 1909 6OU PE8 . O 9 Y01 G 1 906 1910 Y01 Y01 . P 9 Y01 G 1 907 1911 Y01 Y01 . Q 9 Y01 G 1 908 1912 Y01 Y01 . R 9 Y01 G 1 909 1913 Y01 Y01 . S 9 Y01 G 1 910 1915 Y01 Y01 . T 9 Y01 G 1 911 1916 Y01 Y01 . U 12 AJP G 1 912 1801 AJP AJP . V 13 CA K 1 701 1 CA CA . W 14 NAG S 1 901 901 NAG NAG . X 15 LBN S 1 902 901 LBN PC8 . Y 14 NAG T 1 901 901 NAG NAG . Z 11 6OU U 1 701 908 6OU PE8 . AA 16 80T U 1 702 909 80T CD8 . BA 9 Y01 U 1 703 911 Y01 Y01 . CA 9 Y01 U 1 704 912 Y01 Y01 . DA 9 Y01 U 1 705 913 Y01 Y01 . EA 9 Y01 U 1 706 915 Y01 Y01 . FA 9 Y01 U 1 707 918 Y01 Y01 . GA 17 80Y P 1 101 1917 80Y 1GP . HA 18 PA1 P 1 102 1917 PA1 1GP . IA 17 80Y P 1 103 1917 80Y 1GP . JA 19 05E P 1 104 1917 05E 1GP . KA 20 81Q P 1 105 1917 81Q 1GP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . DA 9 130.766 150.887 144.235 1 89.58 ? CAA Y01 705 U 1 HETATM 2 C CBA Y01 . . . DA 9 129.552 151.793 144.257 1 89.58 ? CBA Y01 705 U 1 HETATM 3 C CAB Y01 . . . DA 9 129.405 152.447 145.616 1 89.58 ? CAB Y01 705 U 1 HETATM 4 C CAN Y01 . . . DA 9 129.615 152.816 143.138 1 89.58 ? CAN Y01 705 U 1 HETATM 5 C CAJ Y01 . . . DA 9 130.931 153.571 142.991 1 89.58 ? CAJ Y01 705 U 1 HETATM 6 C CAO Y01 . . . DA 9 130.986 154.4 141.711 1 89.58 ? CAO Y01 705 U 1 HETATM 7 C CBB Y01 . . . DA 9 132.389 154.627 141.116 1 89.58 ? CBB Y01 705 U 1 HETATM 8 C CAC Y01 . . . DA 9 133.46 154.399 142.179 1 89.58 ? CAC Y01 705 U 1 HETATM 9 C CBE Y01 . . . DA 9 132.598 153.766 139.855 1 89.58 ? CBE Y01 705 U 1 HETATM 10 C CAP Y01 . . . DA 9 131.599 152.59 139.773 1 89.58 ? CAP Y01 705 U 1 HETATM 11 C CAQ Y01 . . . DA 9 131.373 152.312 138.276 1 89.58 ? CAQ Y01 705 U 1 HETATM 12 C CBG Y01 . . . DA 9 132.44 153.162 137.578 1 89.58 ? CBG Y01 705 U 1 HETATM 13 C CBI Y01 . . . DA 9 132.531 154.425 138.457 1 89.58 ? CBI Y01 705 U 1 HETATM 14 C CAE Y01 . . . DA 9 131.279 155.305 138.307 1 89.58 ? CAE Y01 705 U 1 HETATM 15 C CAU Y01 . . . DA 9 133.78 155.189 137.997 1 89.58 ? CAU Y01 705 U 1 HETATM 16 C CAS Y01 . . . DA 9 133.749 155.499 136.499 1 89.58 ? CAS Y01 705 U 1 HETATM 17 C CBF Y01 . . . DA 9 133.535 154.259 135.62 1 89.58 ? CBF Y01 705 U 1 HETATM 18 C CBD Y01 . . . DA 9 132.322 153.438 136.076 1 89.58 ? CBD Y01 705 U 1 HETATM 19 C CAK Y01 . . . DA 9 132.266 152.124 135.305 1 89.58 ? CAK Y01 705 U 1 HETATM 20 C CAI Y01 . . . DA 9 132.528 152.301 133.844 1 89.58 ? CAI Y01 705 U 1 HETATM 21 C CAZ Y01 . . . DA 9 133.077 153.373 133.294 1 89.58 ? CAZ Y01 705 U 1 HETATM 22 C CAV Y01 . . . DA 9 133.291 153.443 131.8 1 89.58 ? CAV Y01 705 U 1 HETATM 23 C CBH Y01 . . . DA 9 133.509 154.595 134.099 1 89.58 ? CBH Y01 705 U 1 HETATM 24 C CAD Y01 . . . DA 9 132.531 155.745 133.789 1 89.58 ? CAD Y01 705 U 1 HETATM 25 C CAT Y01 . . . DA 9 134.926 155.003 133.662 1 89.58 ? CAT Y01 705 U 1 HETATM 26 C CAR Y01 . . . DA 9 135.071 155.154 132.147 1 89.58 ? CAR Y01 705 U 1 HETATM 27 C CBC Y01 . . . DA 9 134.709 153.857 131.459 1 89.58 ? CBC Y01 705 U 1 HETATM 28 O OAW Y01 . . . DA 9 134.789 154.048 130.011 1 89.58 ? OAW Y01 705 U 1 HETATM 29 C CAY Y01 . . . DA 9 135.33 153.059 129.282 1 89.58 ? CAY Y01 705 U 1 HETATM 30 O OAG Y01 . . . DA 9 136.513 152.875 129.177 1 89.58 ? OAG Y01 705 U 1 HETATM 31 C CAM Y01 . . . DA 9 134.269 152.227 128.623 1 89.58 ? CAM Y01 705 U 1 HETATM 32 C CAL Y01 . . . DA 9 134.081 150.875 129.29 1 89.58 ? CAL Y01 705 U 1 HETATM 33 C CAX Y01 . . . DA 9 132.92 150.095 128.744 1 89.58 ? CAX Y01 705 U 1 HETATM 34 O OAH Y01 . . . DA 9 131.768 150.464 128.841 1 89.58 ? OAH Y01 705 U 1 HETATM 35 O OAF Y01 . . . DA 9 133.274 148.98 128.16 1 89.58 ? OAF Y01 705 U 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #