data_8INO # _model_server_result.job_id 1kgdg6PSsLkvCYXJ6ogjYg _model_server_result.datetime_utc '2025-06-21 11:41:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ino # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8INO # _exptl.entry_id 8INO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.513 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(3S,5S,8S,9S,10R,13R,14S,17R)-10,13-dimethyl-3,5,14-tris(oxidanyl)-2,3,4,6,7,8,9,11,12,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2H-furan-5-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8INO _cell.length_a 45.608 _cell.length_b 52.2 _cell.length_c 200.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8INO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H34 O5' _chem_comp.formula_weight 390.513 _chem_comp.id Q30 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(3S,5S,8S,9S,10R,13R,14S,17R)-10,13-dimethyl-3,5,14-tris(oxidanyl)-2,3,4,6,7,8,9,11,12,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2H-furan-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C19 Q30 doub 277 n n O5 C23 Q30 sing 278 n n C22 C23 Q30 sing 279 n n C22 C21 Q30 sing 280 n n C18 C19 Q30 sing 281 n n C18 C17 Q30 doub 282 n n C19 O4 Q30 sing 283 n n C15 C14 Q30 sing 284 n n O2 C7 Q30 sing 285 n n C23 C14 Q30 sing 286 n n C23 C10 Q30 sing 287 n n C21 C16 Q30 sing 288 n n C9 C10 Q30 sing 289 n n C9 C8 Q30 sing 290 n n C17 C16 Q30 sing 291 n n C17 C20 Q30 sing 292 n n C14 C16 Q30 sing 293 n n C14 C13 Q30 sing 294 n n O4 C20 Q30 sing 295 n n C1 C2 Q30 sing 296 n n C10 C11 Q30 sing 297 n n C8 C7 Q30 sing 298 n n C7 C2 Q30 sing 299 n n C7 C6 Q30 sing 300 n n C2 C11 Q30 sing 301 n n C2 C3 Q30 sing 302 n n C11 C12 Q30 sing 303 n n C13 C12 Q30 sing 304 n n C6 C5 Q30 sing 305 n n C3 C4 Q30 sing 306 n n C5 C4 Q30 sing 307 n n C5 O1 Q30 sing 308 n n C1 H1 Q30 sing 309 n n C1 H2 Q30 sing 310 n n C1 H3 Q30 sing 311 n n O1 H4 Q30 sing 312 n n O2 H5 Q30 sing 313 n n C3 H6 Q30 sing 314 n n C3 H7 Q30 sing 315 n n C4 H8 Q30 sing 316 n n C4 H9 Q30 sing 317 n n C10 H10 Q30 sing 318 n n C11 H11 Q30 sing 319 n n C12 H12 Q30 sing 320 n n C12 H13 Q30 sing 321 n n C13 H14 Q30 sing 322 n n C13 H15 Q30 sing 323 n n C15 H16 Q30 sing 324 n n C15 H17 Q30 sing 325 n n C15 H18 Q30 sing 326 n n C16 H19 Q30 sing 327 n n C18 H21 Q30 sing 328 n n C20 H23 Q30 sing 329 n n C20 H24 Q30 sing 330 n n C21 H25 Q30 sing 331 n n C21 H26 Q30 sing 332 n n C22 H27 Q30 sing 333 n n C22 H28 Q30 sing 334 n n C5 H29 Q30 sing 335 n n C6 H30 Q30 sing 336 n n C6 H31 Q30 sing 337 n n C8 H32 Q30 sing 338 n n C8 H33 Q30 sing 339 n n C9 H34 Q30 sing 340 n n C9 H35 Q30 sing 341 n n O5 H36 Q30 sing 342 n n # _atom_sites.entry_id 8INO _atom_sites.fract_transf_matrix[1][1] 0.021926 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q30 A 1 501 501 Q30 PEG . C 3 UDP A 1 502 502 UDP UDP . D 4 TRS A 1 503 503 TRS TRS . E 5 HOH A 1 601 42 HOH HOH . E 5 HOH A 2 602 77 HOH HOH . E 5 HOH A 3 603 65 HOH HOH . E 5 HOH A 4 604 63 HOH HOH . E 5 HOH A 5 605 50 HOH HOH . E 5 HOH A 6 606 35 HOH HOH . E 5 HOH A 7 607 69 HOH HOH . E 5 HOH A 8 608 59 HOH HOH . E 5 HOH A 9 609 44 HOH HOH . E 5 HOH A 10 610 78 HOH HOH . E 5 HOH A 11 611 43 HOH HOH . E 5 HOH A 12 612 106 HOH HOH . E 5 HOH A 13 613 3 HOH HOH . E 5 HOH A 14 614 112 HOH HOH . E 5 HOH A 15 615 80 HOH HOH . E 5 HOH A 16 616 12 HOH HOH . E 5 HOH A 17 617 37 HOH HOH . E 5 HOH A 18 618 68 HOH HOH . E 5 HOH A 19 619 36 HOH HOH . E 5 HOH A 20 620 120 HOH HOH . E 5 HOH A 21 621 71 HOH HOH . E 5 HOH A 22 622 1 HOH HOH . E 5 HOH A 23 623 70 HOH HOH . E 5 HOH A 24 624 13 HOH HOH . E 5 HOH A 25 625 10 HOH HOH . E 5 HOH A 26 626 66 HOH HOH . E 5 HOH A 27 627 2 HOH HOH . E 5 HOH A 28 628 110 HOH HOH . E 5 HOH A 29 629 9 HOH HOH . E 5 HOH A 30 630 90 HOH HOH . E 5 HOH A 31 631 24 HOH HOH . E 5 HOH A 32 632 113 HOH HOH . E 5 HOH A 33 633 60 HOH HOH . E 5 HOH A 34 634 14 HOH HOH . E 5 HOH A 35 635 11 HOH HOH . E 5 HOH A 36 636 38 HOH HOH . E 5 HOH A 37 637 8 HOH HOH . E 5 HOH A 38 638 56 HOH HOH . E 5 HOH A 39 639 31 HOH HOH . E 5 HOH A 40 640 28 HOH HOH . E 5 HOH A 41 641 54 HOH HOH . E 5 HOH A 42 642 26 HOH HOH . E 5 HOH A 43 643 73 HOH HOH . E 5 HOH A 44 644 119 HOH HOH . E 5 HOH A 45 645 108 HOH HOH . E 5 HOH A 46 646 20 HOH HOH . E 5 HOH A 47 647 19 HOH HOH . E 5 HOH A 48 648 6 HOH HOH . E 5 HOH A 49 649 23 HOH HOH . E 5 HOH A 50 650 86 HOH HOH . E 5 HOH A 51 651 57 HOH HOH . E 5 HOH A 52 652 5 HOH HOH . E 5 HOH A 53 653 72 HOH HOH . E 5 HOH A 54 654 87 HOH HOH . E 5 HOH A 55 655 117 HOH HOH . E 5 HOH A 56 656 75 HOH HOH . E 5 HOH A 57 657 67 HOH HOH . E 5 HOH A 58 658 64 HOH HOH . E 5 HOH A 59 659 22 HOH HOH . E 5 HOH A 60 660 32 HOH HOH . E 5 HOH A 61 661 30 HOH HOH . E 5 HOH A 62 662 4 HOH HOH . E 5 HOH A 63 663 105 HOH HOH . E 5 HOH A 64 664 15 HOH HOH . E 5 HOH A 65 665 34 HOH HOH . E 5 HOH A 66 666 53 HOH HOH . E 5 HOH A 67 667 7 HOH HOH . E 5 HOH A 68 668 52 HOH HOH . E 5 HOH A 69 669 18 HOH HOH . E 5 HOH A 70 670 85 HOH HOH . E 5 HOH A 71 671 102 HOH HOH . E 5 HOH A 72 672 107 HOH HOH . E 5 HOH A 73 673 29 HOH HOH . E 5 HOH A 74 674 55 HOH HOH . E 5 HOH A 75 675 116 HOH HOH . E 5 HOH A 76 676 21 HOH HOH . E 5 HOH A 77 677 58 HOH HOH . E 5 HOH A 78 678 115 HOH HOH . E 5 HOH A 79 679 41 HOH HOH . E 5 HOH A 80 680 61 HOH HOH . E 5 HOH A 81 681 45 HOH HOH . E 5 HOH A 82 682 88 HOH HOH . E 5 HOH A 83 683 46 HOH HOH . E 5 HOH A 84 684 92 HOH HOH . E 5 HOH A 85 685 16 HOH HOH . E 5 HOH A 86 686 39 HOH HOH . E 5 HOH A 87 687 48 HOH HOH . E 5 HOH A 88 688 17 HOH HOH . E 5 HOH A 89 689 47 HOH HOH . E 5 HOH A 90 690 118 HOH HOH . E 5 HOH A 91 691 76 HOH HOH . E 5 HOH A 92 692 40 HOH HOH . E 5 HOH A 93 693 27 HOH HOH . E 5 HOH A 94 694 100 HOH HOH . E 5 HOH A 95 695 81 HOH HOH . E 5 HOH A 96 696 111 HOH HOH . E 5 HOH A 97 697 51 HOH HOH . E 5 HOH A 98 698 97 HOH HOH . E 5 HOH A 99 699 104 HOH HOH . E 5 HOH A 100 700 84 HOH HOH . E 5 HOH A 101 701 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Q30 . . . B 2 -10.548 33.498 68.729 1 64.8 ? C1 Q30 501 A 1 HETATM 2 O O1 Q30 . . . B 2 -6.657 34.72 72.109 1 62.27 ? O1 Q30 501 A 1 HETATM 3 C C2 Q30 . . . B 2 -9.525 32.776 69.626 1 66.06 ? C2 Q30 501 A 1 HETATM 4 O O2 Q30 . . . B 2 -8.15 33.489 67.75 1 63.23 ? O2 Q30 501 A 1 HETATM 5 C C3 Q30 . . . B 2 -9.587 33.481 70.996 1 64.56 ? C3 Q30 501 A 1 HETATM 6 C C4 Q30 . . . B 2 -8.442 33.088 71.936 1 64.17 ? C4 Q30 501 A 1 HETATM 7 O O4 Q30 . . . B 2 -14.102 24.973 68.557 1 54.23 ? O4 Q30 501 A 1 HETATM 8 C C10 Q30 . . . B 2 -9.418 30.245 68.75 1 65.42 ? C10 Q30 501 A 1 HETATM 9 C C11 Q30 . . . B 2 -9.939 31.274 69.793 1 64.47 ? C11 Q30 501 A 1 HETATM 10 C C12 Q30 . . . B 2 -11.457 31.099 69.96 1 63.21 ? C12 Q30 501 A 1 HETATM 11 C C13 Q30 . . . B 2 -11.905 29.646 69.883 1 60.57 ? C13 Q30 501 A 1 HETATM 12 C C14 Q30 . . . B 2 -11.717 29.031 68.485 1 62.05 ? C14 Q30 501 A 1 HETATM 13 C C15 Q30 . . . B 2 -12.975 29.214 67.645 1 61.23 ? C15 Q30 501 A 1 HETATM 14 C C16 Q30 . . . B 2 -11.351 27.527 68.711 1 60 ? C16 Q30 501 A 1 HETATM 15 C C17 Q30 . . . B 2 -12.406 26.54 68.313 1 58.01 ? C17 Q30 501 A 1 HETATM 16 C C18 Q30 . . . B 2 -12.537 25.878 67.166 1 53.84 ? C18 Q30 501 A 1 HETATM 17 C C19 Q30 . . . B 2 -13.608 24.897 67.302 1 52.4 ? C19 Q30 501 A 1 HETATM 18 C C20 Q30 . . . B 2 -13.576 26.172 69.17 1 54.11 ? C20 Q30 501 A 1 HETATM 19 C C21 Q30 . . . B 2 -10.002 27.323 67.982 1 58.94 ? C21 Q30 501 A 1 HETATM 20 C C22 Q30 . . . B 2 -9.962 28.465 66.957 1 60.68 ? C22 Q30 501 A 1 HETATM 21 C C23 Q30 . . . B 2 -10.461 29.644 67.793 1 63.54 ? C23 Q30 501 A 1 HETATM 22 C C5 Q30 . . . B 2 -7.109 33.554 71.39 1 64.59 ? C5 Q30 501 A 1 HETATM 23 C C6 Q30 . . . B 2 -7.233 33.929 69.926 1 66.59 ? C6 Q30 501 A 1 HETATM 24 C C7 Q30 . . . B 2 -8.06 32.947 69.089 1 66.93 ? C7 Q30 501 A 1 HETATM 25 C C8 Q30 . . . B 2 -7.337 31.625 68.908 1 68.07 ? C8 Q30 501 A 1 HETATM 26 C C9 Q30 . . . B 2 -8.157 30.704 68.017 1 65.97 ? C9 Q30 501 A 1 HETATM 27 O O3 Q30 . . . B 2 -14.039 24.086 66.521 1 47.97 ? O3 Q30 501 A 1 HETATM 28 O O5 Q30 . . . B 2 -10.882 30.691 66.884 1 63.38 ? O5 Q30 501 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #