data_8IOG # _model_server_result.job_id 77-45gd8pSqnwJMn1ntjqA _model_server_result.datetime_utc '2024-11-13 06:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":401}' # _entry.id 8IOG # _exptl.entry_id 8IOG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 W N N ? 12 X N N ? 12 DA N N ? 12 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 N SG CYS 144 c CYS 222 1_555 N SG CYS 160 c CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 83 A HIS 83 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A NE2 HIS 97 A HIS 97 1_555 W FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc3 A NE2 HIS 182 A HIS 182 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 A NE2 HIS 196 A HIS 196 1_555 W FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 B NE2 HIS 126 B HIS 126 1_555 Z FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 C SG CYS 139 C CYS 217 1_555 AA FE1 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc7 C SG CYS 144 C CYS 222 1_555 AA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 L NE2 HIS 97 a HIS 97 1_555 EA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc9 L NE2 HIS 182 a HIS 182 1_555 DA FE HEM . a HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 L NE2 HIS 196 a HIS 196 1_555 EA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc11 M SD MET 245 b MET 245 1_555 HA FE HEC . b HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 472 n n CHA C4D HEM doub 473 n n CHA HHA HEM sing 474 n n CHB C4A HEM sing 475 n n CHB C1B HEM doub 476 n n CHB HHB HEM sing 477 n n CHC C4B HEM sing 478 n n CHC C1C HEM doub 479 n n CHC HHC HEM sing 480 n n CHD C4C HEM doub 481 n n CHD C1D HEM sing 482 n n CHD HHD HEM sing 483 n n C1A C2A HEM doub 484 n y C1A NA HEM sing 485 n y C2A C3A HEM sing 486 n y C2A CAA HEM sing 487 n n C3A C4A HEM doub 488 n y C3A CMA HEM sing 489 n n C4A NA HEM sing 490 n y CMA HMA HEM sing 491 n n CMA HMAA HEM sing 492 n n CMA HMAB HEM sing 493 n n CAA CBA HEM sing 494 n n CAA HAA HEM sing 495 n n CAA HAAA HEM sing 496 n n CBA CGA HEM sing 497 n n CBA HBA HEM sing 498 n n CBA HBAA HEM sing 499 n n CGA O1A HEM doub 500 n n CGA O2A HEM sing 501 n n C1B C2B HEM sing 502 n n C1B NB HEM sing 503 n n C2B C3B HEM doub 504 n n C2B CMB HEM sing 505 n n C3B C4B HEM sing 506 n n C3B CAB HEM sing 507 n n C4B NB HEM doub 508 n n CMB HMB HEM sing 509 n n CMB HMBA HEM sing 510 n n CMB HMBB HEM sing 511 n n CAB CBB HEM doub 512 n n CAB HAB HEM sing 513 n n CBB HBB HEM sing 514 n n CBB HBBA HEM sing 515 n n C1C C2C HEM sing 516 n y C1C NC HEM sing 517 n y C2C C3C HEM doub 518 n y C2C CMC HEM sing 519 n n C3C C4C HEM sing 520 n y C3C CAC HEM sing 521 n n C4C NC HEM sing 522 n y CMC HMC HEM sing 523 n n CMC HMCA HEM sing 524 n n CMC HMCB HEM sing 525 n n CAC CBC HEM doub 526 n n CAC HAC HEM sing 527 n n CBC HBC HEM sing 528 n n CBC HBCA HEM sing 529 n n C1D C2D HEM sing 530 n n C1D ND HEM doub 531 n n C2D C3D HEM doub 532 n n C2D CMD HEM sing 533 n n C3D C4D HEM sing 534 n n C3D CAD HEM sing 535 n n C4D ND HEM sing 536 n n CMD HMD HEM sing 537 n n CMD HMDA HEM sing 538 n n CMD HMDB HEM sing 539 n n CAD CBD HEM sing 540 n n CAD HAD HEM sing 541 n n CAD HADA HEM sing 542 n n CBD CGD HEM sing 543 n n CBD HBD HEM sing 544 n n CBD HBDA HEM sing 545 n n CGD O1D HEM doub 546 n n CGD O2D HEM sing 547 n n O2A H2A HEM sing 548 n n O2D H2D HEM sing 549 n n FE NA HEM sing 550 n n FE NB HEM sing 551 n n FE NC HEM sing 552 n n FE ND HEM sing 553 n n # _atom_sites.entry_id 8IOG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 HEM A 1 401 404 HEM HEM . X 12 HEM A 1 402 405 HEM HEM . Y 13 PEE A 1 403 497 PEE PEE . Z 14 HEC B 1 401 406 HEC HEC . AA 15 FES C 1 301 302 FES FES . BA 16 CDL D 1 501 501 CDL CDL . CA 13 PEE D 1 502 503 PEE PEE . DA 12 HEM a 1 401 401 HEM HEM . EA 12 HEM a 1 402 402 HEM HEM . FA 13 PEE a 1 403 498 PEE PEE . GA 16 CDL a 1 404 499 CDL CDL . HA 14 HEC b 1 401 403 HEC HEC . IA 15 FES c 1 301 303 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . DA 12 130.414 135.51 82.855 1 39.49 ? CHA HEM 401 a 1 HETATM 2 C CHB HEM . . . DA 12 131.741 136.633 87.391 1 39.49 ? CHB HEM 401 a 1 HETATM 3 C CHC HEM . . . DA 12 128.854 133.159 89.019 1 39.49 ? CHC HEM 401 a 1 HETATM 4 C CHD HEM . . . DA 12 127.996 131.657 84.492 1 39.49 ? CHD HEM 401 a 1 HETATM 5 C C1A HEM . . . DA 12 130.949 136.172 83.936 1 39.49 ? C1A HEM 401 a 1 HETATM 6 C C2A HEM . . . DA 12 131.675 137.427 83.915 1 39.49 ? C2A HEM 401 a 1 HETATM 7 C C3A HEM . . . DA 12 132.033 137.716 85.166 1 39.49 ? C3A HEM 401 a 1 HETATM 8 C C4A HEM . . . DA 12 131.561 136.671 86.032 1 39.49 ? C4A HEM 401 a 1 HETATM 9 C CMA HEM . . . DA 12 132.822 138.952 85.618 1 39.49 ? CMA HEM 401 a 1 HETATM 10 C CAA HEM . . . DA 12 132.006 138.311 82.691 1 39.49 ? CAA HEM 401 a 1 HETATM 11 C CBA HEM . . . DA 12 130.78 138.595 81.832 1 39.49 ? CBA HEM 401 a 1 HETATM 12 C CGA HEM . . . DA 12 131.132 139.632 80.803 1 39.49 ? CGA HEM 401 a 1 HETATM 13 O O1A HEM . . . DA 12 130.323 139.842 79.871 1 39.49 ? O1A HEM 401 a 1 HETATM 14 O O2A HEM . . . DA 12 132.219 140.249 80.914 1 39.49 ? O2A HEM 401 a 1 HETATM 15 C C1B HEM . . . DA 12 131.055 135.81 88.251 1 39.49 ? C1B HEM 401 a 1 HETATM 16 C C2B HEM . . . DA 12 131.081 135.837 89.698 1 39.49 ? C2B HEM 401 a 1 HETATM 17 C C3B HEM . . . DA 12 130.265 134.876 90.145 1 39.49 ? C3B HEM 401 a 1 HETATM 18 C C4B HEM . . . DA 12 129.723 134.21 88.992 1 39.49 ? C4B HEM 401 a 1 HETATM 19 C CMB HEM . . . DA 12 131.906 136.837 90.528 1 39.49 ? CMB HEM 401 a 1 HETATM 20 C CAB HEM . . . DA 12 129.931 134.434 91.59 1 39.49 ? CAB HEM 401 a 1 HETATM 21 C CBB HEM . . . DA 12 130.724 134.661 92.638 1 39.49 ? CBB HEM 401 a 1 HETATM 22 C C1C HEM . . . DA 12 128.407 132.462 87.924 1 39.49 ? C1C HEM 401 a 1 HETATM 23 C C2C HEM . . . DA 12 127.571 131.302 88.022 1 39.49 ? C2C HEM 401 a 1 HETATM 24 C C3C HEM . . . DA 12 127.316 130.876 86.786 1 39.49 ? C3C HEM 401 a 1 HETATM 25 C C4C HEM . . . DA 12 127.999 131.759 85.861 1 39.49 ? C4C HEM 401 a 1 HETATM 26 C CMC HEM . . . DA 12 127.097 130.75 89.378 1 39.49 ? CMC HEM 401 a 1 HETATM 27 C CAC HEM . . . DA 12 126.473 129.661 86.36 1 39.49 ? CAC HEM 401 a 1 HETATM 28 C CBC HEM . . . DA 12 125.97 128.79 87.234 1 39.49 ? CBC HEM 401 a 1 HETATM 29 C C1D HEM . . . DA 12 128.544 132.576 83.637 1 39.49 ? C1D HEM 401 a 1 HETATM 30 C C2D HEM . . . DA 12 128.467 132.59 82.189 1 39.49 ? C2D HEM 401 a 1 HETATM 31 C C3D HEM . . . DA 12 129.137 133.644 81.742 1 39.49 ? C3D HEM 401 a 1 HETATM 32 C C4D HEM . . . DA 12 129.665 134.355 82.888 1 39.49 ? C4D HEM 401 a 1 HETATM 33 C CMD HEM . . . DA 12 127.752 131.57 81.29 1 39.49 ? CMD HEM 401 a 1 HETATM 34 C CAD HEM . . . DA 12 129.307 134.041 80.262 1 39.49 ? CAD HEM 401 a 1 HETATM 35 C CBD HEM . . . DA 12 128.066 134.802 79.81 1 39.49 ? CBD HEM 401 a 1 HETATM 36 C CGD HEM . . . DA 12 128.437 136.156 79.257 1 39.49 ? CGD HEM 401 a 1 HETATM 37 O O1D HEM . . . DA 12 127.517 136.944 78.924 1 39.49 ? O1D HEM 401 a 1 HETATM 38 O O2D HEM . . . DA 12 129.649 136.456 79.148 1 39.49 ? O2D HEM 401 a 1 HETATM 39 N NA HEM . . . DA 12 130.901 135.74 85.251 1 39.49 ? NA HEM 401 a 1 HETATM 40 N NB HEM . . . DA 12 130.213 134.797 87.854 1 39.49 ? NB HEM 401 a 1 HETATM 41 N NC HEM . . . DA 12 128.656 132.722 86.591 1 39.49 ? NC HEM 401 a 1 HETATM 42 N ND HEM . . . DA 12 129.284 133.669 84.029 1 39.49 ? ND HEM 401 a 1 HETATM 43 FE FE HEM . . . DA 12 129.663 134.282 85.925 1 39.49 ? FE HEM 401 a 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 99 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #