data_8IOG # _model_server_result.job_id AuqzRmzGzJj5lJre6xoYjw _model_server_result.datetime_utc '2024-11-13 06:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":401}' # _entry.id 8IOG # _exptl.entry_id 8IOG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Z N N ? 14 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 N SG CYS 144 c CYS 222 1_555 N SG CYS 160 c CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 83 A HIS 83 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A NE2 HIS 97 A HIS 97 1_555 W FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc3 A NE2 HIS 182 A HIS 182 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 A NE2 HIS 196 A HIS 196 1_555 W FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 B NE2 HIS 126 B HIS 126 1_555 Z FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 C SG CYS 139 C CYS 217 1_555 AA FE1 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc7 C SG CYS 144 C CYS 222 1_555 AA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 L NE2 HIS 97 a HIS 97 1_555 EA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc9 L NE2 HIS 182 a HIS 182 1_555 DA FE HEM . a HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 L NE2 HIS 196 a HIS 196 1_555 EA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc11 M SD MET 245 b MET 245 1_555 HA FE HEC . b HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 388 n n FE NB HEC sing 389 n n FE NC HEC sing 390 n n FE ND HEC sing 391 n n CHA C1A HEC doub 392 n n CHA C4D HEC sing 393 n n CHA HHA HEC sing 394 n n CHB C4A HEC doub 395 n n CHB C1B HEC sing 396 n n CHB HHB HEC sing 397 n n CHC C4B HEC doub 398 n n CHC C1C HEC sing 399 n n CHC HHC HEC sing 400 n n CHD C4C HEC doub 401 n n CHD C1D HEC sing 402 n n CHD HHD HEC sing 403 n n NA C1A HEC sing 404 n y NA C4A HEC sing 405 n y C1A C2A HEC sing 406 n y C2A C3A HEC doub 407 n y C2A CAA HEC sing 408 n n C3A C4A HEC sing 409 n y C3A CMA HEC sing 410 n n CMA HMA1 HEC sing 411 n n CMA HMA2 HEC sing 412 n n CMA HMA3 HEC sing 413 n n CAA CBA HEC sing 414 n n CAA HAA1 HEC sing 415 n n CAA HAA2 HEC sing 416 n n CBA CGA HEC sing 417 n n CBA HBA1 HEC sing 418 n n CBA HBA2 HEC sing 419 n n CGA O1A HEC doub 420 n n CGA O2A HEC sing 421 n n O2A H2A HEC sing 422 n n NB C1B HEC sing 423 n y NB C4B HEC sing 424 n y C1B C2B HEC doub 425 n y C2B C3B HEC sing 426 n y C2B CMB HEC sing 427 n n C3B C4B HEC sing 428 n y C3B CAB HEC doub 429 e n CMB HMB1 HEC sing 430 n n CMB HMB2 HEC sing 431 n n CMB HMB3 HEC sing 432 n n CAB CBB HEC sing 433 n n CAB HAB HEC sing 434 n n CBB HBB1 HEC sing 435 n n CBB HBB2 HEC sing 436 n n CBB HBB3 HEC sing 437 n n NC C1C HEC sing 438 n y NC C4C HEC sing 439 n y C1C C2C HEC doub 440 n y C2C C3C HEC sing 441 n y C2C CMC HEC sing 442 n n C3C C4C HEC sing 443 n y C3C CAC HEC doub 444 e n CMC HMC1 HEC sing 445 n n CMC HMC2 HEC sing 446 n n CMC HMC3 HEC sing 447 n n CAC CBC HEC sing 448 n n CAC HAC HEC sing 449 n n CBC HBC1 HEC sing 450 n n CBC HBC2 HEC sing 451 n n CBC HBC3 HEC sing 452 n n ND C1D HEC sing 453 n y ND C4D HEC sing 454 n y C1D C2D HEC doub 455 n y C2D C3D HEC sing 456 n y C2D CMD HEC sing 457 n n C3D C4D HEC doub 458 n y C3D CAD HEC sing 459 n n CMD HMD1 HEC sing 460 n n CMD HMD2 HEC sing 461 n n CMD HMD3 HEC sing 462 n n CAD CBD HEC sing 463 n n CAD HAD1 HEC sing 464 n n CAD HAD2 HEC sing 465 n n CBD CGD HEC sing 466 n n CBD HBD1 HEC sing 467 n n CBD HBD2 HEC sing 468 n n CGD O1D HEC doub 469 n n CGD O2D HEC sing 470 n n O2D H2D HEC sing 471 n n # _atom_sites.entry_id 8IOG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 HEM A 1 401 404 HEM HEM . X 12 HEM A 1 402 405 HEM HEM . Y 13 PEE A 1 403 497 PEE PEE . Z 14 HEC B 1 401 406 HEC HEC . AA 15 FES C 1 301 302 FES FES . BA 16 CDL D 1 501 501 CDL CDL . CA 13 PEE D 1 502 503 PEE PEE . DA 12 HEM a 1 401 401 HEM HEM . EA 12 HEM a 1 402 402 HEM HEM . FA 13 PEE a 1 403 498 PEE PEE . GA 16 CDL a 1 404 499 CDL CDL . HA 14 HEC b 1 401 403 HEC HEC . IA 15 FES c 1 301 303 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . HA 14 136.514 152.711 54.418 1 97.72 ? FE HEC 401 b 1 HETATM 2 C CHA HEC . . . HA 14 138.999 151.405 56.405 1 97.72 ? CHA HEC 401 b 1 HETATM 3 C CHB HEC . . . HA 14 135.168 154.229 57.059 1 97.72 ? CHB HEC 401 b 1 HETATM 4 C CHC HEC . . . HA 14 134.088 154.183 52.364 1 97.72 ? CHC HEC 401 b 1 HETATM 5 C CHD HEC . . . HA 14 137.841 151.185 51.678 1 97.72 ? CHD HEC 401 b 1 HETATM 6 N NA HEC . . . HA 14 136.943 152.703 56.369 1 97.72 ? NA HEC 401 b 1 HETATM 7 C C1A HEC . . . HA 14 138.117 152.291 56.956 1 97.72 ? C1A HEC 401 b 1 HETATM 8 C C2A HEC . . . HA 14 138.252 152.924 58.248 1 97.72 ? C2A HEC 401 b 1 HETATM 9 C C3A HEC . . . HA 14 137.195 153.7 58.419 1 97.72 ? C3A HEC 401 b 1 HETATM 10 C C4A HEC . . . HA 14 136.356 153.577 57.247 1 97.72 ? C4A HEC 401 b 1 HETATM 11 C CMA HEC . . . HA 14 136.905 154.583 59.647 1 97.72 ? CMA HEC 401 b 1 HETATM 12 C CAA HEC . . . HA 14 139.419 152.756 59.239 1 97.72 ? CAA HEC 401 b 1 HETATM 13 C CBA HEC . . . HA 14 139.049 151.873 60.424 1 97.72 ? CBA HEC 401 b 1 HETATM 14 C CGA HEC . . . HA 14 140.188 151.921 61.41 1 97.72 ? CGA HEC 401 b 1 HETATM 15 O O1A HEC . . . HA 14 140.368 150.949 62.185 1 97.72 ? O1A HEC 401 b 1 HETATM 16 O O2A HEC . . . HA 14 140.929 152.936 61.414 1 97.72 ? O2A HEC 401 b 1 HETATM 17 N NB HEC . . . HA 14 134.981 154.074 54.625 1 97.72 ? NB HEC 401 b 1 HETATM 18 C C1B HEC . . . HA 14 134.494 154.363 55.876 1 97.72 ? C1B HEC 401 b 1 HETATM 19 C C2B HEC . . . HA 14 133.139 154.839 55.752 1 97.72 ? C2B HEC 401 b 1 HETATM 20 C C3B HEC . . . HA 14 132.817 154.831 54.459 1 97.72 ? C3B HEC 401 b 1 HETATM 21 C C4B HEC . . . HA 14 133.976 154.357 53.722 1 97.72 ? C4B HEC 401 b 1 HETATM 22 C CMB HEC . . . HA 14 132.244 155.26 56.94 1 97.72 ? CMB HEC 401 b 1 HETATM 23 C CAB HEC . . . HA 14 131.455 155.271 53.878 1 97.72 ? CAB HEC 401 b 1 HETATM 24 C CBB HEC . . . HA 14 131.283 156.803 54.032 1 97.72 ? CBB HEC 401 b 1 HETATM 25 N NC HEC . . . HA 14 135.997 152.642 52.406 1 97.72 ? NC HEC 401 b 1 HETATM 26 C C1C HEC . . . HA 14 135.055 153.417 51.755 1 97.72 ? C1C HEC 401 b 1 HETATM 27 C C2C HEC . . . HA 14 135.325 153.357 50.336 1 97.72 ? C2C HEC 401 b 1 HETATM 28 C C3C HEC . . . HA 14 136.296 152.46 50.15 1 97.72 ? C3C HEC 401 b 1 HETATM 29 C C4C HEC . . . HA 14 136.785 152.04 51.448 1 97.72 ? C4C HEC 401 b 1 HETATM 30 C CMC HEC . . . HA 14 134.435 153.989 49.241 1 97.72 ? CMC HEC 401 b 1 HETATM 31 C CAC HEC . . . HA 14 136.902 152.031 48.796 1 97.72 ? CAC HEC 401 b 1 HETATM 32 C CBC HEC . . . HA 14 137.784 153.179 48.261 1 97.72 ? CBC HEC 401 b 1 HETATM 33 N ND HEC . . . HA 14 138.167 151.497 54.099 1 97.72 ? ND HEC 401 b 1 HETATM 34 C C1D HEC . . . HA 14 138.495 150.949 52.868 1 97.72 ? C1D HEC 401 b 1 HETATM 35 C C2D HEC . . . HA 14 139.645 150.084 53.037 1 97.72 ? C2D HEC 401 b 1 HETATM 36 C C3D HEC . . . HA 14 139.998 150.163 54.52 1 97.72 ? C3D HEC 401 b 1 HETATM 37 C C4D HEC . . . HA 14 139.033 151.052 55.088 1 97.72 ? C4D HEC 401 b 1 HETATM 38 C CMD HEC . . . HA 14 140.372 149.257 51.958 1 97.72 ? CMD HEC 401 b 1 HETATM 39 C CAD HEC . . . HA 14 141.129 149.446 55.271 1 97.72 ? CAD HEC 401 b 1 HETATM 40 C CBD HEC . . . HA 14 142.313 150.389 55.401 1 97.72 ? CBD HEC 401 b 1 HETATM 41 C CGD HEC . . . HA 14 143.486 149.597 55.905 1 97.72 ? CGD HEC 401 b 1 HETATM 42 O O1D HEC . . . HA 14 143.33 148.867 56.916 1 97.72 ? O1D HEC 401 b 1 HETATM 43 O O2D HEC . . . HA 14 144.579 149.705 55.296 1 97.72 ? O2D HEC 401 b 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #