data_8IOG # _model_server_result.job_id n5uJY6Jn5piYlbNm-8QhEQ _model_server_result.datetime_utc '2024-11-13 06:18:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":401}' # _entry.id 8IOG # _exptl.entry_id 8IOG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 W N N ? 12 X N N ? 12 DA N N ? 12 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 N SG CYS 144 c CYS 222 1_555 N SG CYS 160 c CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 83 A HIS 83 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A NE2 HIS 97 A HIS 97 1_555 W FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc3 A NE2 HIS 182 A HIS 182 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 A NE2 HIS 196 A HIS 196 1_555 W FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 B NE2 HIS 126 B HIS 126 1_555 Z FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 C SG CYS 139 C CYS 217 1_555 AA FE1 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc7 C SG CYS 144 C CYS 222 1_555 AA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 L NE2 HIS 97 a HIS 97 1_555 EA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc9 L NE2 HIS 182 a HIS 182 1_555 DA FE HEM . a HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 L NE2 HIS 196 a HIS 196 1_555 EA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc11 M SD MET 245 b MET 245 1_555 HA FE HEC . b HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 472 n n CHA C4D HEM doub 473 n n CHA HHA HEM sing 474 n n CHB C4A HEM sing 475 n n CHB C1B HEM doub 476 n n CHB HHB HEM sing 477 n n CHC C4B HEM sing 478 n n CHC C1C HEM doub 479 n n CHC HHC HEM sing 480 n n CHD C4C HEM doub 481 n n CHD C1D HEM sing 482 n n CHD HHD HEM sing 483 n n C1A C2A HEM doub 484 n y C1A NA HEM sing 485 n y C2A C3A HEM sing 486 n y C2A CAA HEM sing 487 n n C3A C4A HEM doub 488 n y C3A CMA HEM sing 489 n n C4A NA HEM sing 490 n y CMA HMA HEM sing 491 n n CMA HMAA HEM sing 492 n n CMA HMAB HEM sing 493 n n CAA CBA HEM sing 494 n n CAA HAA HEM sing 495 n n CAA HAAA HEM sing 496 n n CBA CGA HEM sing 497 n n CBA HBA HEM sing 498 n n CBA HBAA HEM sing 499 n n CGA O1A HEM doub 500 n n CGA O2A HEM sing 501 n n C1B C2B HEM sing 502 n n C1B NB HEM sing 503 n n C2B C3B HEM doub 504 n n C2B CMB HEM sing 505 n n C3B C4B HEM sing 506 n n C3B CAB HEM sing 507 n n C4B NB HEM doub 508 n n CMB HMB HEM sing 509 n n CMB HMBA HEM sing 510 n n CMB HMBB HEM sing 511 n n CAB CBB HEM doub 512 n n CAB HAB HEM sing 513 n n CBB HBB HEM sing 514 n n CBB HBBA HEM sing 515 n n C1C C2C HEM sing 516 n y C1C NC HEM sing 517 n y C2C C3C HEM doub 518 n y C2C CMC HEM sing 519 n n C3C C4C HEM sing 520 n y C3C CAC HEM sing 521 n n C4C NC HEM sing 522 n y CMC HMC HEM sing 523 n n CMC HMCA HEM sing 524 n n CMC HMCB HEM sing 525 n n CAC CBC HEM doub 526 n n CAC HAC HEM sing 527 n n CBC HBC HEM sing 528 n n CBC HBCA HEM sing 529 n n C1D C2D HEM sing 530 n n C1D ND HEM doub 531 n n C2D C3D HEM doub 532 n n C2D CMD HEM sing 533 n n C3D C4D HEM sing 534 n n C3D CAD HEM sing 535 n n C4D ND HEM sing 536 n n CMD HMD HEM sing 537 n n CMD HMDA HEM sing 538 n n CMD HMDB HEM sing 539 n n CAD CBD HEM sing 540 n n CAD HAD HEM sing 541 n n CAD HADA HEM sing 542 n n CBD CGD HEM sing 543 n n CBD HBD HEM sing 544 n n CBD HBDA HEM sing 545 n n CGD O1D HEM doub 546 n n CGD O2D HEM sing 547 n n O2A H2A HEM sing 548 n n O2D H2D HEM sing 549 n n FE NA HEM sing 550 n n FE NB HEM sing 551 n n FE NC HEM sing 552 n n FE ND HEM sing 553 n n # _atom_sites.entry_id 8IOG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 HEM A 1 401 404 HEM HEM . X 12 HEM A 1 402 405 HEM HEM . Y 13 PEE A 1 403 497 PEE PEE . Z 14 HEC B 1 401 406 HEC HEC . AA 15 FES C 1 301 302 FES FES . BA 16 CDL D 1 501 501 CDL CDL . CA 13 PEE D 1 502 503 PEE PEE . DA 12 HEM a 1 401 401 HEM HEM . EA 12 HEM a 1 402 402 HEM HEM . FA 13 PEE a 1 403 498 PEE PEE . GA 16 CDL a 1 404 499 CDL CDL . HA 14 HEC b 1 401 403 HEC HEC . IA 15 FES c 1 301 303 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . W 12 113.033 107.399 106.575 1 29.27 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . W 12 115.516 109.139 102.81 1 29.27 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . W 12 111.556 109.513 100.15 1 29.27 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . W 12 108.946 108.339 104.053 1 29.27 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . W 12 114.106 107.764 105.775 1 29.27 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . W 12 115.545 107.679 106.033 1 29.27 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . W 12 116.17 108.171 104.984 1 29.27 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . W 12 115.205 108.581 104.018 1 29.27 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . W 12 117.691 108.283 104.825 1 29.27 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . W 12 116.36 107.157 107.237 1 29.27 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . W 12 115.656 106.078 108.035 1 29.27 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . W 12 115.838 104.773 107.346 1 29.27 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . W 12 114.969 103.887 107.481 1 29.27 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . W 12 116.859 104.633 106.653 1 29.27 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . W 12 114.665 109.418 101.78 1 29.27 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . W 12 115.039 110.036 100.539 1 29.27 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . W 12 113.941 110.139 99.789 1 29.27 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . W 12 112.854 109.592 100.557 1 29.27 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . W 12 116.478 110.462 100.208 1 29.27 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . W 12 113.736 110.719 98.366 1 29.27 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . W 12 114.669 111.357 97.658 1 29.27 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . W 12 110.507 109.182 100.959 1 29.27 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . W 12 109.154 109.041 100.533 1 29.27 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . W 12 108.409 108.724 101.571 1 29.27 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . W 12 109.267 108.638 102.742 1 29.27 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . W 12 108.629 109.232 99.105 1 29.27 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . W 12 106.906 108.518 101.386 1 29.27 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . W 12 106.094 108.341 102.406 1 29.27 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . W 12 109.811 107.983 105.077 1 29.27 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . W 12 109.436 107.538 106.397 1 29.27 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . W 12 110.529 107.267 107.1 1 29.27 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . W 12 111.687 107.54 106.267 1 29.27 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . W 12 108.006 107.387 106.935 1 29.27 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . W 12 110.44 106.782 108.56 1 29.27 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . W 12 111.459 105.72 108.918 1 29.27 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . W 12 110.925 104.666 109.852 1 29.27 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . W 12 111.663 104.342 110.797 1 29.27 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . W 12 109.804 104.14 109.672 1 29.27 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . W 12 113.957 108.328 104.518 1 29.27 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . W 12 113.325 109.162 101.771 1 29.27 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . W 12 110.548 108.927 102.315 1 29.27 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . W 12 111.193 107.969 105.04 1 29.27 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . W 12 112.285 108.665 103.424 1 29.27 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #