data_8IOG # _model_server_result.job_id 3oMbrsAnX4g_yvyfsQDxIg _model_server_result.datetime_utc '2024-11-13 06:25:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":403}' # _entry.id 8IOG # _exptl.entry_id 8IOG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 Y N N ? 13 CA N N ? 13 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 N SG CYS 144 c CYS 222 1_555 N SG CYS 160 c CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 83 A HIS 83 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A NE2 HIS 97 A HIS 97 1_555 W FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc3 A NE2 HIS 182 A HIS 182 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 A NE2 HIS 196 A HIS 196 1_555 W FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 B NE2 HIS 126 B HIS 126 1_555 Z FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 C SG CYS 139 C CYS 217 1_555 AA FE1 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc7 C SG CYS 144 C CYS 222 1_555 AA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 L NE2 HIS 97 a HIS 97 1_555 EA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc9 L NE2 HIS 182 a HIS 182 1_555 DA FE HEM . a HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 L NE2 HIS 196 a HIS 196 1_555 EA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc11 M SD MET 245 b MET 245 1_555 HA FE HEC . b HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 660 n n C5 C4 PEE sing 661 n n C4 O4P PEE sing 662 n n O4P P PEE sing 663 n n O1P P PEE doub 664 n n C1 O3P PEE sing 665 n n C1 C2 PEE sing 666 n n O3P P PEE sing 667 n n P O2P PEE sing 668 n n C2 C3 PEE sing 669 n n C2 O2 PEE sing 670 n n C3 O3 PEE sing 671 n n O2 C10 PEE sing 672 n n C31 C30 PEE sing 673 n n C31 C32 PEE sing 674 n n C33 C32 PEE sing 675 n n C33 C34 PEE sing 676 n n C30 O3 PEE sing 677 n n C30 O5 PEE doub 678 n n C10 O4 PEE doub 679 n n C10 C11 PEE sing 680 n n C34 C35 PEE sing 681 n n C11 C12 PEE sing 682 n n C35 C36 PEE sing 683 n n C36 C37 PEE sing 684 n n C37 C38 PEE sing 685 n n C38 C39 PEE doub 686 z n C12 C13 PEE sing 687 n n C39 C40 PEE sing 688 n n C13 C14 PEE sing 689 n n C14 C15 PEE sing 690 n n C40 C41 PEE sing 691 n n C15 C16 PEE sing 692 n n C41 C42 PEE sing 693 n n C16 C17 PEE sing 694 n n C42 C43 PEE sing 695 n n C17 C18 PEE sing 696 n n C43 C44 PEE sing 697 n n C18 C19 PEE doub 698 z n C46 C47 PEE sing 699 n n C46 C45 PEE sing 700 n n C44 C45 PEE sing 701 n n C19 C20 PEE sing 702 n n C20 C21 PEE sing 703 n n C21 C22 PEE sing 704 n n C22 C23 PEE sing 705 n n C23 C24 PEE sing 706 n n C24 C25 PEE sing 707 n n C26 C25 PEE sing 708 n n C26 C27 PEE sing 709 n n C27 H7 PEE sing 710 n n C27 H8 PEE sing 711 n n C27 H82 PEE sing 712 n n C26 H5 PEE sing 713 n n C26 H6 PEE sing 714 n n C25 H12 PEE sing 715 n n C25 H4 PEE sing 716 n n C24 H10 PEE sing 717 n n C24 H11 PEE sing 718 n n C23 H83 PEE sing 719 n n C23 H9 PEE sing 720 n n C22 H2 PEE sing 721 n n C22 H3 PEE sing 722 n n C21 H14 PEE sing 723 n n C21 H1 PEE sing 724 n n C20 H16 PEE sing 725 n n C20 H13 PEE sing 726 n n C19 H18 PEE sing 727 n n C18 H20 PEE sing 728 n n C17 H22 PEE sing 729 n n C17 H19 PEE sing 730 n n C16 H21 PEE sing 731 n n C16 H28 PEE sing 732 n n C15 H23 PEE sing 733 n n C15 H24 PEE sing 734 n n C14 H25 PEE sing 735 n n C14 H26 PEE sing 736 n n C13 H17 PEE sing 737 n n C13 H27 PEE sing 738 n n C12 H15 PEE sing 739 n n C12 H29 PEE sing 740 n n C11 H30 PEE sing 741 n n C11 H31 PEE sing 742 n n C2 H32 PEE sing 743 n n C1 H33 PEE sing 744 n n C1 H34 PEE sing 745 n n O2P H35 PEE sing 746 n n C4 H36 PEE sing 747 n n C4 H37 PEE sing 748 n n C5 H38 PEE sing 749 n n C5 H39 PEE sing 750 n n N H40 PEE sing 751 n n N H41 PEE sing 752 n n C3 H43 PEE sing 753 n n C3 H44 PEE sing 754 n n C31 H45 PEE sing 755 n n C31 H46 PEE sing 756 n n C32 H47 PEE sing 757 n n C32 H48 PEE sing 758 n n C33 H49 PEE sing 759 n n C33 H50 PEE sing 760 n n C34 H51 PEE sing 761 n n C34 H52 PEE sing 762 n n C35 H53 PEE sing 763 n n C35 H54 PEE sing 764 n n C36 H55 PEE sing 765 n n C36 H56 PEE sing 766 n n C37 H57 PEE sing 767 n n C37 H58 PEE sing 768 n n C38 H59 PEE sing 769 n n C39 H60 PEE sing 770 n n C40 H81 PEE sing 771 n n C40 H61 PEE sing 772 n n C41 H80 PEE sing 773 n n C41 H62 PEE sing 774 n n C42 H63 PEE sing 775 n n C42 H64 PEE sing 776 n n C43 H65 PEE sing 777 n n C43 H66 PEE sing 778 n n C44 H67 PEE sing 779 n n C44 H68 PEE sing 780 n n C45 H69 PEE sing 781 n n C45 H70 PEE sing 782 n n C46 H71 PEE sing 783 n n C46 H72 PEE sing 784 n n C47 H73 PEE sing 785 n n C47 H74 PEE sing 786 n n C47 H75 PEE sing 787 n n # _atom_sites.entry_id 8IOG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 HEM A 1 401 404 HEM HEM . X 12 HEM A 1 402 405 HEM HEM . Y 13 PEE A 1 403 497 PEE PEE . Z 14 HEC B 1 401 406 HEC HEC . AA 15 FES C 1 301 302 FES FES . BA 16 CDL D 1 501 501 CDL CDL . CA 13 PEE D 1 502 503 PEE PEE . DA 12 HEM a 1 401 401 HEM HEM . EA 12 HEM a 1 402 402 HEM HEM . FA 13 PEE a 1 403 498 PEE PEE . GA 16 CDL a 1 404 499 CDL CDL . HA 14 HEC b 1 401 403 HEC HEC . IA 15 FES c 1 301 303 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . Y 13 102.543 104.937 94.266 1 53.32 ? C27 PEE 403 A 1 HETATM 2 C C26 PEE . . . Y 13 102.481 104.067 95.531 1 53.32 ? C26 PEE 403 A 1 HETATM 3 C C25 PEE . . . Y 13 103.757 103.206 95.66 1 53.32 ? C25 PEE 403 A 1 HETATM 4 C C24 PEE . . . Y 13 103.502 102.129 96.749 1 53.32 ? C24 PEE 403 A 1 HETATM 5 C C23 PEE . . . Y 13 104.15 100.789 96.347 1 53.32 ? C23 PEE 403 A 1 HETATM 6 C C22 PEE . . . Y 13 103.39 99.623 97.031 1 53.32 ? C22 PEE 403 A 1 HETATM 7 C C21 PEE . . . Y 13 103.822 98.254 96.382 1 53.32 ? C21 PEE 403 A 1 HETATM 8 C C20 PEE . . . Y 13 105.286 97.901 96.801 1 53.32 ? C20 PEE 403 A 1 HETATM 9 C C19 PEE . . . Y 13 105.319 96.485 97.466 1 53.32 ? C19 PEE 403 A 1 HETATM 10 C C18 PEE . . . Y 13 106.751 95.853 97.351 1 53.32 ? C18 PEE 403 A 1 HETATM 11 C C17 PEE . . . Y 13 107.653 96.376 98.511 1 53.32 ? C17 PEE 403 A 1 HETATM 12 C C16 PEE . . . Y 13 108.152 95.18 99.382 1 53.32 ? C16 PEE 403 A 1 HETATM 13 C C15 PEE . . . Y 13 108.257 95.629 100.881 1 53.32 ? C15 PEE 403 A 1 HETATM 14 C C14 PEE . . . Y 13 107.42 94.663 101.767 1 53.32 ? C14 PEE 403 A 1 HETATM 15 C C13 PEE . . . Y 13 107.891 94.821 103.241 1 53.32 ? C13 PEE 403 A 1 HETATM 16 C C12 PEE . . . Y 13 108.469 93.462 103.766 1 53.32 ? C12 PEE 403 A 1 HETATM 17 C C11 PEE . . . Y 13 107.317 92.451 103.977 1 53.32 ? C11 PEE 403 A 1 HETATM 18 C C10 PEE . . . Y 13 107.901 91.155 104.623 1 53.32 ? C10 PEE 403 A 1 HETATM 19 O O4 PEE . . . Y 13 109.035 91.12 104.961 1 53.32 ? O4 PEE 403 A 1 HETATM 20 O O2 PEE . . . Y 13 107.047 90.024 104.801 1 53.32 ? O2 PEE 403 A 1 HETATM 21 C C2 PEE . . . Y 13 107.6 88.8 105.194 1 53.32 ? C2 PEE 403 A 1 HETATM 22 C C1 PEE . . . Y 13 107.35 88.595 106.679 1 53.32 ? C1 PEE 403 A 1 HETATM 23 O O3P PEE . . . Y 13 108.261 89.399 107.417 1 53.32 ? O3P PEE 403 A 1 HETATM 24 P P PEE . . . Y 13 107.876 89.963 108.943 1 53.32 ? P PEE 403 A 1 HETATM 25 O O2P PEE . . . Y 13 107.699 91.456 108.939 1 53.32 ? O2P PEE 403 A 1 HETATM 26 O O1P PEE . . . Y 13 108.985 89.632 109.894 1 53.32 ? O1P PEE 403 A 1 HETATM 27 O O4P PEE . . . Y 13 106.533 89.195 109.502 1 53.32 ? O4P PEE 403 A 1 HETATM 28 C C4 PEE . . . Y 13 106.8 88.169 110.446 1 53.32 ? C4 PEE 403 A 1 HETATM 29 C C5 PEE . . . Y 13 105.523 87.332 110.671 1 53.32 ? C5 PEE 403 A 1 HETATM 30 N N PEE . . . Y 13 104.635 87.537 109.527 1 53.32 ? N PEE 403 A 1 HETATM 31 C C3 PEE . . . Y 13 106.8 87.723 104.454 1 53.32 ? C3 PEE 403 A 1 HETATM 32 O O3 PEE . . . Y 13 107.625 86.73 103.89 1 53.32 ? O3 PEE 403 A 1 HETATM 33 C C30 PEE . . . Y 13 108.446 87.205 102.822 1 53.32 ? C30 PEE 403 A 1 HETATM 34 O O5 PEE . . . Y 13 109.602 87.013 102.851 1 53.32 ? O5 PEE 403 A 1 HETATM 35 C C31 PEE . . . Y 13 107.849 87.967 101.628 1 53.32 ? C31 PEE 403 A 1 HETATM 36 C C32 PEE . . . Y 13 108.954 88.911 101.078 1 53.32 ? C32 PEE 403 A 1 HETATM 37 C C33 PEE . . . Y 13 109.73 88.218 99.94 1 53.32 ? C33 PEE 403 A 1 HETATM 38 C C34 PEE . . . Y 13 108.957 88.428 98.615 1 53.32 ? C34 PEE 403 A 1 HETATM 39 C C35 PEE . . . Y 13 109.199 89.861 98.107 1 53.32 ? C35 PEE 403 A 1 HETATM 40 C C36 PEE . . . Y 13 108.336 90.085 96.838 1 53.32 ? C36 PEE 403 A 1 HETATM 41 C C37 PEE . . . Y 13 108.686 91.456 96.172 1 53.32 ? C37 PEE 403 A 1 HETATM 42 C C38 PEE . . . Y 13 107.955 91.539 94.808 1 53.32 ? C38 PEE 403 A 1 HETATM 43 C C39 PEE . . . Y 13 108.112 92.962 94.226 1 53.32 ? C39 PEE 403 A 1 HETATM 44 C C40 PEE . . . Y 13 107.413 93.018 92.808 1 53.32 ? C40 PEE 403 A 1 HETATM 45 C C41 PEE . . . Y 13 108.066 91.953 91.87 1 53.32 ? C41 PEE 403 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 316 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 45 #