data_8IOY # _model_server_result.job_id bwe39KSvbjkY_jgiGmeqeg _model_server_result.datetime_utc '2024-11-22 00:00:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ioy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2000}' # _entry.id 8IOY # _exptl.entry_id 8IOY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IOY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8IOY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ANP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2000 _pdbx_nonpoly_scheme.auth_seq_num 2000 _pdbx_nonpoly_scheme.pdb_mon_id ANP _pdbx_nonpoly_scheme.auth_mon_id ANP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 62.95 132.189 120.844 1 100.38 ? PG ANP 2000 A 1 HETATM 2 O O1G ANP . . . B 2 62.021 131.326 121.675 1 100.38 ? O1G ANP 2000 A 1 HETATM 3 O O2G ANP . . . B 2 63.983 132.83 121.749 1 100.38 ? O2G ANP 2000 A 1 HETATM 4 O O3G ANP . . . B 2 63.651 131.324 119.802 1 100.38 ? O3G ANP 2000 A 1 HETATM 5 P PB ANP . . . B 2 61.202 133.034 118.63 1 100.38 ? PB ANP 2000 A 1 HETATM 6 O O1B ANP . . . B 2 61.779 131.786 117.997 1 100.38 ? O1B ANP 2000 A 1 HETATM 7 O O2B ANP . . . B 2 61.318 134.192 117.66 1 100.38 ? O2B ANP 2000 A 1 HETATM 8 N N3B ANP . . . B 2 62.049 133.395 120.069 1 100.38 ? N3B ANP 2000 A 1 HETATM 9 P PA ANP . . . B 2 59.077 132.563 120.567 1 100.38 ? PA ANP 2000 A 1 HETATM 10 O O1A ANP . . . B 2 59.746 133.557 121.474 1 100.38 ? O1A ANP 2000 A 1 HETATM 11 O O2A ANP . . . B 2 59.419 131.163 121.023 1 100.38 ? O2A ANP 2000 A 1 HETATM 12 O O3A ANP . . . B 2 59.606 132.793 119.009 1 100.38 ? O3A ANP 2000 A 1 HETATM 13 O O5' ANP . . . B 2 57.443 132.773 120.629 1 100.38 ? O5' ANP 2000 A 1 HETATM 14 C C5' ANP . . . B 2 56.677 131.803 121.301 1 100.38 ? C5' ANP 2000 A 1 HETATM 15 C C4' ANP . . . B 2 55.228 131.972 120.933 1 100.38 ? C4' ANP 2000 A 1 HETATM 16 O O4' ANP . . . B 2 54.521 131.981 122.004 1 100.38 ? O4' ANP 2000 A 1 HETATM 17 C C3' ANP . . . B 2 54.966 133.432 120.166 1 100.38 ? C3' ANP 2000 A 1 HETATM 18 O O3' ANP . . . B 2 55.125 133.278 118.698 1 100.38 ? O3' ANP 2000 A 1 HETATM 19 C C2' ANP . . . B 2 53.811 133.727 120.437 1 100.38 ? C2' ANP 2000 A 1 HETATM 20 O O2' ANP . . . B 2 52.86 133.007 119.508 1 100.38 ? O2' ANP 2000 A 1 HETATM 21 C C1' ANP . . . B 2 53.628 133.197 121.922 1 100.38 ? C1' ANP 2000 A 1 HETATM 22 N N9 ANP . . . B 2 54.025 134.115 122.795 1 100.38 ? N9 ANP 2000 A 1 HETATM 23 C C8 ANP . . . B 2 55.246 134.24 123.278 1 100.38 ? C8 ANP 2000 A 1 HETATM 24 N N7 ANP . . . B 2 55.286 135.264 124.129 1 100.38 ? N7 ANP 2000 A 1 HETATM 25 C C5 ANP . . . B 2 54.06 135.797 124.187 1 100.38 ? C5 ANP 2000 A 1 HETATM 26 C C6 ANP . . . B 2 53.507 136.866 124.892 1 100.38 ? C6 ANP 2000 A 1 HETATM 27 N N6 ANP . . . B 2 54.325 137.667 125.804 1 100.38 ? N6 ANP 2000 A 1 HETATM 28 N N1 ANP . . . B 2 52.213 137.138 124.715 1 100.38 ? N1 ANP 2000 A 1 HETATM 29 C C2 ANP . . . B 2 51.466 136.429 123.902 1 100.38 ? C2 ANP 2000 A 1 HETATM 30 N N3 ANP . . . B 2 51.962 135.408 123.218 1 100.38 ? N3 ANP 2000 A 1 HETATM 31 C C4 ANP . . . B 2 53.246 135.069 123.338 1 100.38 ? C4 ANP 2000 A 1 HETATM 32 H HNB1 ANP . . . B 2 62.01 134.186 120.405 1 100.38 ? HNB1 ANP 2000 A 1 HETATM 33 H "H5'1" ANP . . . B 2 56.784 131.909 122.259 1 100.38 ? "H5'1" ANP 2000 A 1 HETATM 34 H "H5'2" ANP . . . B 2 56.975 130.919 121.037 1 100.38 ? "H5'2" ANP 2000 A 1 HETATM 35 H H4' ANP . . . B 2 54.942 131.245 120.359 1 100.38 ? H4' ANP 2000 A 1 HETATM 36 H H3' ANP . . . B 2 55.567 134.113 120.507 1 100.38 ? H3' ANP 2000 A 1 HETATM 37 H HO3' ANP . . . B 2 55.333 132.474 118.517 1 100.38 ? HO3' ANP 2000 A 1 HETATM 38 H H2' ANP . . . B 2 53.683 134.688 120.397 1 100.38 ? H2' ANP 2000 A 1 HETATM 39 H HO2' ANP . . . B 2 52.418 133.577 119.058 1 100.38 ? HO2' ANP 2000 A 1 HETATM 40 H H1' ANP . . . B 2 52.704 132.949 122.08 1 100.38 ? H1' ANP 2000 A 1 HETATM 41 H H8 ANP . . . B 2 55.968 133.698 123.056 1 100.38 ? H8 ANP 2000 A 1 HETATM 42 H HN61 ANP . . . B 2 54.109 137.727 126.635 1 100.38 ? HN61 ANP 2000 A 1 HETATM 43 H HN62 ANP . . . B 2 55.022 138.076 125.511 1 100.38 ? HN62 ANP 2000 A 1 HETATM 44 H H2 ANP . . . B 2 50.569 136.648 123.805 1 100.38 ? H2 ANP 2000 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #