data_8IPK # _model_server_result.job_id oOkZo2slONz0a--GYbVvKw _model_server_result.datetime_utc '2024-11-04 20:53:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ipk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8IPK # _exptl.entry_id 8IPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8IPK _cell.length_a 70.506 _cell.length_b 70.506 _cell.length_c 134.674 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8IPK _atom_sites.fract_transf_matrix[1][1] 0.014183 _atom_sites.fract_transf_matrix[1][2] 0.008189 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 401 401 SAM SAM . C 3 GOL A 1 402 201 GOL GOL . D 3 GOL A 1 403 401 GOL GOL . E 3 GOL A 1 404 601 GOL GOL . F 3 GOL A 1 405 701 GOL GOL . G 4 HOH A 1 501 31 HOH HOH . G 4 HOH A 2 502 21 HOH HOH . G 4 HOH A 3 503 35 HOH HOH . G 4 HOH A 4 504 108 HOH HOH . G 4 HOH A 5 505 112 HOH HOH . G 4 HOH A 6 506 85 HOH HOH . G 4 HOH A 7 507 49 HOH HOH . G 4 HOH A 8 508 80 HOH HOH . G 4 HOH A 9 509 8 HOH HOH . G 4 HOH A 10 510 102 HOH HOH . G 4 HOH A 11 511 74 HOH HOH . G 4 HOH A 12 512 63 HOH HOH . G 4 HOH A 13 513 38 HOH HOH . G 4 HOH A 14 514 16 HOH HOH . G 4 HOH A 15 515 29 HOH HOH . G 4 HOH A 16 516 22 HOH HOH . G 4 HOH A 17 517 70 HOH HOH . G 4 HOH A 18 518 1 HOH HOH . G 4 HOH A 19 519 45 HOH HOH . G 4 HOH A 20 520 90 HOH HOH . G 4 HOH A 21 521 81 HOH HOH . G 4 HOH A 22 522 24 HOH HOH . G 4 HOH A 23 523 48 HOH HOH . G 4 HOH A 24 524 50 HOH HOH . G 4 HOH A 25 525 42 HOH HOH . G 4 HOH A 26 526 44 HOH HOH . G 4 HOH A 27 527 2 HOH HOH . G 4 HOH A 28 528 77 HOH HOH . G 4 HOH A 29 529 55 HOH HOH . G 4 HOH A 30 530 19 HOH HOH . G 4 HOH A 31 531 61 HOH HOH . G 4 HOH A 32 532 96 HOH HOH . G 4 HOH A 33 533 23 HOH HOH . G 4 HOH A 34 534 111 HOH HOH . G 4 HOH A 35 535 76 HOH HOH . G 4 HOH A 36 536 12 HOH HOH . G 4 HOH A 37 537 91 HOH HOH . G 4 HOH A 38 538 94 HOH HOH . G 4 HOH A 39 539 4 HOH HOH . G 4 HOH A 40 540 110 HOH HOH . G 4 HOH A 41 541 40 HOH HOH . G 4 HOH A 42 542 62 HOH HOH . G 4 HOH A 43 543 15 HOH HOH . G 4 HOH A 44 544 78 HOH HOH . G 4 HOH A 45 545 86 HOH HOH . G 4 HOH A 46 546 30 HOH HOH . G 4 HOH A 47 547 36 HOH HOH . G 4 HOH A 48 548 60 HOH HOH . G 4 HOH A 49 549 73 HOH HOH . G 4 HOH A 50 550 32 HOH HOH . G 4 HOH A 51 551 27 HOH HOH . G 4 HOH A 52 552 26 HOH HOH . G 4 HOH A 53 553 10 HOH HOH . G 4 HOH A 54 554 11 HOH HOH . G 4 HOH A 55 555 82 HOH HOH . G 4 HOH A 56 556 64 HOH HOH . G 4 HOH A 57 557 18 HOH HOH . G 4 HOH A 58 558 51 HOH HOH . G 4 HOH A 59 559 3 HOH HOH . G 4 HOH A 60 560 41 HOH HOH . G 4 HOH A 61 561 107 HOH HOH . G 4 HOH A 62 562 58 HOH HOH . G 4 HOH A 63 563 109 HOH HOH . G 4 HOH A 64 564 53 HOH HOH . G 4 HOH A 65 565 57 HOH HOH . G 4 HOH A 66 566 101 HOH HOH . G 4 HOH A 67 567 28 HOH HOH . G 4 HOH A 68 568 66 HOH HOH . G 4 HOH A 69 569 98 HOH HOH . G 4 HOH A 70 570 13 HOH HOH . G 4 HOH A 71 571 93 HOH HOH . G 4 HOH A 72 572 105 HOH HOH . G 4 HOH A 73 573 9 HOH HOH . G 4 HOH A 74 574 72 HOH HOH . G 4 HOH A 75 575 52 HOH HOH . G 4 HOH A 76 576 34 HOH HOH . G 4 HOH A 77 577 14 HOH HOH . G 4 HOH A 78 578 69 HOH HOH . G 4 HOH A 79 579 47 HOH HOH . G 4 HOH A 80 580 56 HOH HOH . G 4 HOH A 81 581 106 HOH HOH . G 4 HOH A 82 582 25 HOH HOH . G 4 HOH A 83 583 39 HOH HOH . G 4 HOH A 84 584 67 HOH HOH . G 4 HOH A 85 585 54 HOH HOH . G 4 HOH A 86 586 68 HOH HOH . G 4 HOH A 87 587 88 HOH HOH . G 4 HOH A 88 588 97 HOH HOH . G 4 HOH A 89 589 83 HOH HOH . G 4 HOH A 90 590 99 HOH HOH . G 4 HOH A 91 591 92 HOH HOH . G 4 HOH A 92 592 89 HOH HOH . G 4 HOH A 93 593 95 HOH HOH . G 4 HOH A 94 594 103 HOH HOH . G 4 HOH A 95 595 104 HOH HOH . G 4 HOH A 96 596 65 HOH HOH . G 4 HOH A 97 597 100 HOH HOH . G 4 HOH A 98 598 33 HOH HOH . G 4 HOH A 99 599 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -32.251 -1.095 8.564 1 52.25 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 3 -31.302 -0.315 9.254 1 34.83 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 3 -31.731 -2.566 8.463 1 56.67 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 3 -30.703 -2.697 7.519 1 50.74 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 3 -33.002 -3.416 8.12 1 59.13 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 3 -32.778 -4.735 8.56 1 62.41 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #