data_8IPW
#
_model_server_result.job_id            R3JozgHmrJ5z_r-09BdwNg 
_model_server_result.datetime_utc      '2025-02-24 17:40:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ipw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    8IPW 
#
_exptl.entry_id    8IPW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8IPW 
_cell.length_a            50.79 
_cell.length_b            108.32 
_cell.length_c            129.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IPW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                AR6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Adenosine-5-Diphosphoribose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 AR6 doub 13 n y 
N1 C6 AR6 sing 14 n y 
C2 N3 AR6 sing 15 n y 
N3 C4 AR6 doub 16 n y 
C4 C5 AR6 sing 17 n y 
C4 N9 AR6 sing 18 n y 
C5 C6 AR6 doub 19 n y 
C5 N7 AR6 sing 20 n y 
C6 N6 AR6 sing 21 n n 
N7 C8 AR6 doub 22 n y 
C8 N9 AR6 sing 23 n y 
N9 C1' AR6 sing 24 n n 
PA O1A AR6 sing 25 n n 
PA O2A AR6 doub 26 n n 
PA O3A AR6 sing 27 n n 
PA O5' AR6 sing 28 n n 
PB O1B AR6 sing 29 n n 
PB O2B AR6 doub 30 n n 
PB O3A AR6 sing 31 n n 
PB O5D AR6 sing 32 n n 
C1' C2' AR6 sing 33 n n 
C1' O4' AR6 sing 34 n n 
C1D O1D AR6 sing 35 n n 
C1D C2D AR6 sing 36 n n 
C1D O4D AR6 sing 37 n n 
C2' O2' AR6 sing 38 n n 
C2' C3' AR6 sing 39 n n 
C2D O2D AR6 sing 40 n n 
C2D C3D AR6 sing 41 n n 
C3' O3' AR6 sing 42 n n 
C3' C4' AR6 sing 43 n n 
C3D O3D AR6 sing 44 n n 
C3D C4D AR6 sing 45 n n 
C4' O4' AR6 sing 46 n n 
C4' C5' AR6 sing 47 n n 
C4D O4D AR6 sing 48 n n 
C4D C5D AR6 sing 49 n n 
C5' O5' AR6 sing 50 n n 
C5D O5D AR6 sing 51 n n 
C2 H2 AR6 sing 52 n n 
N6 HN6 AR6 sing 53 n n 
N6 HN6A AR6 sing 54 n n 
C8 H8 AR6 sing 55 n n 
C1' H1' AR6 sing 56 n n 
C1D H1D AR6 sing 57 n n 
C2' H2' AR6 sing 58 n n 
O2' HO2' AR6 sing 59 n n 
C2D H2D AR6 sing 60 n n 
O2D HO2D AR6 sing 61 n n 
C3' H3' AR6 sing 62 n n 
O3' HO3' AR6 sing 63 n n 
C3D H3D AR6 sing 64 n n 
O3D HO3D AR6 sing 65 n n 
C4' H4' AR6 sing 66 n n 
C4D H4D AR6 sing 67 n n 
C5' H5' AR6 sing 68 n n 
C5' "H5'A" AR6 sing 69 n n 
C5D H5D AR6 sing 70 n n 
C5D H5DA AR6 sing 71 n n 
O1A H1A AR6 sing 72 n n 
O1B H1B AR6 sing 73 n n 
O1D HD1 AR6 sing 74 n n 
#
_atom_sites.entry_id                     8IPW 
_atom_sites.fract_transf_matrix[1][1]    0.019689 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009232 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007705 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 501 411 AR6 AR6 . 
D 2 AR6 B 1 501 411 AR6 AR6 . 
E 3 HOH A 1 601 16 HOH HOH . 
E 3 HOH A 2 602 17 HOH HOH . 
E 3 HOH A 3 603 15 HOH HOH . 
E 3 HOH A 4 604 5 HOH HOH . 
E 3 HOH A 5 605 9 HOH HOH . 
E 3 HOH A 6 606 1 HOH HOH . 
E 3 HOH A 7 607 4 HOH HOH . 
E 3 HOH A 8 608 3 HOH HOH . 
E 3 HOH A 9 609 7 HOH HOH . 
F 3 HOH B 1 601 14 HOH HOH . 
F 3 HOH B 2 602 13 HOH HOH . 
F 3 HOH B 3 603 12 HOH HOH . 
F 3 HOH B 4 604 8 HOH HOH . 
F 3 HOH B 5 605 6 HOH HOH . 
F 3 HOH B 6 606 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 AR6 . . . D 2 -29.725 40.224 -40.093 1 64.19 ? N1 AR6 501 B 1 
HETATM 2 C C2 AR6 . . . D 2 -29.262 39.457 -39.068 1 64.1 ? C2 AR6 501 B 1 
HETATM 3 N N3 AR6 . . . D 2 -30.001 38.468 -38.561 1 64.34 ? N3 AR6 501 B 1 
HETATM 4 C C4 AR6 . . . D 2 -31.199 38.167 -39.142 1 65.41 ? C4 AR6 501 B 1 
HETATM 5 C C5 AR6 . . . D 2 -31.633 38.897 -40.147 1 65.59 ? C5 AR6 501 B 1 
HETATM 6 C C6 AR6 . . . D 2 -30.891 39.936 -40.637 1 64.86 ? C6 AR6 501 B 1 
HETATM 7 N N6 AR6 . . . D 2 -31.086 40.899 -41.696 1 65.42 ? N6 AR6 501 B 1 
HETATM 8 N N7 AR6 . . . D 2 -32.845 38.449 -40.51 1 66.39 ? N7 AR6 501 B 1 
HETATM 9 C C8 AR6 . . . D 2 -33.159 37.434 -39.727 1 66.53 ? C8 AR6 501 B 1 
HETATM 10 N N9 AR6 . . . D 2 -32.145 37.232 -38.886 1 66.25 ? N9 AR6 501 B 1 
HETATM 11 P PA AR6 . . . D 2 -32.922 31.755 -40.103 1 65.39 ? PA AR6 501 B 1 
HETATM 12 P PB AR6 . . . D 2 -34.048 29.22 -38.98 1 63.25 ? PB AR6 501 B 1 
HETATM 13 C C1' AR6 . . . D 2 -32.044 36.307 -37.831 1 66.17 ? C1' AR6 501 B 1 
HETATM 14 O O1A AR6 . . . D 2 -34.207 31.949 -40.849 1 66.34 ? O1A AR6 501 B 1 
HETATM 15 O O1B AR6 . . . D 2 -35.237 29.934 -38.458 1 62.74 ? O1B AR6 501 B 1 
HETATM 16 C C1D AR6 . . . D 2 -31.914 28.348 -43.874 1 64.07 ? C1D AR6 501 B 1 
HETATM 17 O O1D AR6 . . . D 2 -32.432 28.378 -45.13 1 64.74 ? O1D AR6 501 B 1 
HETATM 18 C C2' AR6 . . . D 2 -33.19 35.68 -37.541 1 66.4 ? C2' AR6 501 B 1 
HETATM 19 O O2' AR6 . . . D 2 -34.087 36.499 -36.787 1 66.66 ? O2' AR6 501 B 1 
HETATM 20 O O2A AR6 . . . D 2 -31.719 31.897 -40.98 1 65.14 ? O2A AR6 501 B 1 
HETATM 21 O O2B AR6 . . . D 2 -33.381 28.273 -38.05 1 63.07 ? O2B AR6 501 B 1 
HETATM 22 C C2D AR6 . . . D 2 -31.559 27.124 -43.454 1 63.37 ? C2D AR6 501 B 1 
HETATM 23 O O2D AR6 . . . D 2 -30.864 26.319 -44.474 1 62.59 ? O2D AR6 501 B 1 
HETATM 24 C C3' AR6 . . . D 2 -32.697 34.426 -36.66 1 66.56 ? C3' AR6 501 B 1 
HETATM 25 O O3' AR6 . . . D 2 -32.462 34.848 -35.308 1 66.94 ? O3' AR6 501 B 1 
HETATM 26 O O3A AR6 . . . D 2 -32.799 30.197 -39.477 1 64.38 ? O3A AR6 501 B 1 
HETATM 27 C C3D AR6 . . . D 2 -32.892 26.485 -42.992 1 64 ? C3D AR6 501 B 1 
HETATM 28 O O3D AR6 . . . D 2 -33.673 26.112 -43.979 1 64.79 ? O3D AR6 501 B 1 
HETATM 29 C C4' AR6 . . . D 2 -31.527 33.989 -37.24 1 65.83 ? C4' AR6 501 B 1 
HETATM 30 O O4' AR6 . . . D 2 -31.086 35.109 -38.212 1 65.92 ? O4' AR6 501 B 1 
HETATM 31 C C4D AR6 . . . D 2 -33.625 27.71 -42.328 1 63.77 ? C4D AR6 501 B 1 
HETATM 32 O O4D AR6 . . . D 2 -33.06 28.809 -42.788 1 64.21 ? O4D AR6 501 B 1 
HETATM 33 C C5' AR6 . . . D 2 -31.764 32.666 -37.954 1 65.34 ? C5' AR6 501 B 1 
HETATM 34 O O5' AR6 . . . D 2 -32.886 32.778 -38.834 1 65.32 ? O5' AR6 501 B 1 
HETATM 35 C C5D AR6 . . . D 2 -33.454 27.591 -40.848 1 63.45 ? C5D AR6 501 B 1 
HETATM 36 O O5D AR6 . . . D 2 -34.499 28.361 -40.308 1 63.94 ? O5D AR6 501 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#