data_8IPZ # _model_server_result.job_id 5vGoeGN99zZFmlTTJQFVxw _model_server_result.datetime_utc '2024-10-19 11:30:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ipz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":102}' # _entry.id 8IPZ # _exptl.entry_id 8IPZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8IPZ _cell.length_a 78.874 _cell.length_b 78.874 _cell.length_c 79.282 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IPZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA dodecameric 12 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1,2,4 E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -39.437 68.306888 0 4 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -78.874 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 N N N ? 4 R N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf7 E SG CYS 6 E CYS 6 1_555 E SG CYS 11 E CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf8 E SG CYS 7 E CYS 7 1_555 F SG CYS 7 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf9 E SG CYS 20 E CYS 20 1_555 F SG CYS 19 F CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf10 G SG CYS 6 G CYS 6 1_555 G SG CYS 11 G CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf11 G SG CYS 7 G CYS 7 1_555 H SG CYS 7 H CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 G SG CYS 20 G CYS 20 1_555 H SG CYS 19 H CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? covale ? covale1 D NZ LYS 29 D LYS 29 1_555 P C1 MYR . D MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 F NZ LYS 29 F LYS 29 1_555 T C1 MYR . F MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 H NZ LYS 29 H LYS 29 1_555 X C1 MYR . H MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 J ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc2 D NE2 HIS 10 D HIS 10 1_555 N ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 F NE2 HIS 10 F HIS 10 1_555 R ZN ZN . F ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 H NE2 HIS 10 H HIS 10 1_555 V ZN ZN . H ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8IPZ _atom_sites.fract_transf_matrix[1][1] 0.012678 _atom_sites.fract_transf_matrix[1][2] 0.00732 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 IPH B 1 101 22 IPH IPH . J 4 ZN B 1 102 30 ZN ZN . K 5 CL B 1 103 31 CL CL . L 6 MYR B 1 104 39 MYR MYR . M 3 IPH D 1 101 22 IPH IPH . N 4 ZN D 1 102 30 ZN ZN . O 5 CL D 1 103 31 CL CL . P 6 MYR D 1 104 39 MYR MYR . Q 3 IPH F 1 101 22 IPH IPH . R 4 ZN F 1 102 30 ZN ZN . S 5 CL F 1 103 31 CL CL . T 6 MYR F 1 104 39 MYR MYR . U 3 IPH H 1 101 22 IPH IPH . V 4 ZN H 1 102 30 ZN ZN . W 5 CL H 1 103 31 CL CL . X 6 MYR H 1 104 39 MYR MYR . Y 7 HOH A 1 101 146 HOH HOH . Y 7 HOH A 2 102 5 HOH HOH . Y 7 HOH A 3 103 93 HOH HOH . Y 7 HOH A 4 104 145 HOH HOH . Y 7 HOH A 5 105 63 HOH HOH . Y 7 HOH A 6 106 74 HOH HOH . Y 7 HOH A 7 107 139 HOH HOH . Y 7 HOH A 8 108 22 HOH HOH . Y 7 HOH A 9 109 71 HOH HOH . Y 7 HOH A 10 110 80 HOH HOH . Y 7 HOH A 11 111 75 HOH HOH . Y 7 HOH A 12 112 70 HOH HOH . Y 7 HOH A 13 113 160 HOH HOH . Y 7 HOH A 14 114 138 HOH HOH . Y 7 HOH A 15 115 91 HOH HOH . Y 7 HOH A 16 116 141 HOH HOH . Y 7 HOH A 17 117 201 HOH HOH . Y 7 HOH A 18 118 131 HOH HOH . Y 7 HOH A 19 119 11 HOH HOH . Y 7 HOH A 20 120 173 HOH HOH . Y 7 HOH A 21 121 147 HOH HOH . Y 7 HOH A 22 122 111 HOH HOH . Y 7 HOH A 23 123 143 HOH HOH . Y 7 HOH A 24 124 140 HOH HOH . Y 7 HOH A 25 125 99 HOH HOH . Y 7 HOH A 26 126 136 HOH HOH . Y 7 HOH A 27 127 106 HOH HOH . Y 7 HOH A 28 128 163 HOH HOH . Y 7 HOH A 29 129 112 HOH HOH . Y 7 HOH A 30 130 171 HOH HOH . Z 7 HOH B 1 201 181 HOH HOH . Z 7 HOH B 2 202 158 HOH HOH . Z 7 HOH B 3 203 152 HOH HOH . Z 7 HOH B 4 204 51 HOH HOH . Z 7 HOH B 5 205 165 HOH HOH . Z 7 HOH B 6 206 77 HOH HOH . Z 7 HOH B 7 207 159 HOH HOH . Z 7 HOH B 8 208 150 HOH HOH . Z 7 HOH B 9 209 52 HOH HOH . Z 7 HOH B 10 210 164 HOH HOH . Z 7 HOH B 11 211 32 HOH HOH . Z 7 HOH B 12 212 117 HOH HOH . Z 7 HOH B 13 213 161 HOH HOH . Z 7 HOH B 14 214 2 HOH HOH . Z 7 HOH B 15 215 97 HOH HOH . Z 7 HOH B 16 216 184 HOH HOH . Z 7 HOH B 17 217 48 HOH HOH . Z 7 HOH B 18 218 149 HOH HOH . Z 7 HOH B 19 219 24 HOH HOH . Z 7 HOH B 20 220 58 HOH HOH . Z 7 HOH B 21 221 3 HOH HOH . Z 7 HOH B 22 222 69 HOH HOH . Z 7 HOH B 23 223 27 HOH HOH . Z 7 HOH B 24 224 137 HOH HOH . Z 7 HOH B 25 225 186 HOH HOH . Z 7 HOH B 26 226 153 HOH HOH . Z 7 HOH B 27 227 185 HOH HOH . Z 7 HOH B 28 228 151 HOH HOH . Z 7 HOH B 29 229 157 HOH HOH . Z 7 HOH B 30 230 28 HOH HOH . Z 7 HOH B 31 231 155 HOH HOH . Z 7 HOH B 32 232 183 HOH HOH . Z 7 HOH B 33 233 162 HOH HOH . AA 7 HOH C 1 101 105 HOH HOH . AA 7 HOH C 2 102 42 HOH HOH . AA 7 HOH C 3 103 169 HOH HOH . AA 7 HOH C 4 104 122 HOH HOH . AA 7 HOH C 5 105 36 HOH HOH . AA 7 HOH C 6 106 115 HOH HOH . AA 7 HOH C 7 107 57 HOH HOH . AA 7 HOH C 8 108 129 HOH HOH . AA 7 HOH C 9 109 54 HOH HOH . AA 7 HOH C 10 110 10 HOH HOH . AA 7 HOH C 11 111 175 HOH HOH . AA 7 HOH C 12 112 170 HOH HOH . AA 7 HOH C 13 113 53 HOH HOH . AA 7 HOH C 14 114 101 HOH HOH . AA 7 HOH C 15 115 92 HOH HOH . AA 7 HOH C 16 116 132 HOH HOH . AA 7 HOH C 17 117 174 HOH HOH . AA 7 HOH C 18 118 168 HOH HOH . AA 7 HOH C 19 119 45 HOH HOH . BA 7 HOH D 1 201 178 HOH HOH . BA 7 HOH D 2 202 180 HOH HOH . BA 7 HOH D 3 203 110 HOH HOH . BA 7 HOH D 4 204 133 HOH HOH . BA 7 HOH D 5 205 100 HOH HOH . BA 7 HOH D 6 206 142 HOH HOH . BA 7 HOH D 7 207 25 HOH HOH . BA 7 HOH D 8 208 124 HOH HOH . BA 7 HOH D 9 209 17 HOH HOH . BA 7 HOH D 10 210 62 HOH HOH . BA 7 HOH D 11 211 31 HOH HOH . BA 7 HOH D 12 212 154 HOH HOH . BA 7 HOH D 13 213 179 HOH HOH . BA 7 HOH D 14 214 120 HOH HOH . BA 7 HOH D 15 215 172 HOH HOH . BA 7 HOH D 16 216 72 HOH HOH . BA 7 HOH D 17 217 59 HOH HOH . BA 7 HOH D 18 218 123 HOH HOH . BA 7 HOH D 19 219 182 HOH HOH . BA 7 HOH D 20 220 33 HOH HOH . BA 7 HOH D 21 221 177 HOH HOH . BA 7 HOH D 22 222 176 HOH HOH . BA 7 HOH D 23 223 81 HOH HOH . BA 7 HOH D 24 224 156 HOH HOH . BA 7 HOH D 25 225 187 HOH HOH . BA 7 HOH D 26 226 60 HOH HOH . BA 7 HOH D 27 227 199 HOH HOH . CA 7 HOH E 1 101 196 HOH HOH . CA 7 HOH E 2 102 84 HOH HOH . CA 7 HOH E 3 103 211 HOH HOH . CA 7 HOH E 4 104 189 HOH HOH . CA 7 HOH E 5 105 198 HOH HOH . CA 7 HOH E 6 106 194 HOH HOH . CA 7 HOH E 7 107 200 HOH HOH . CA 7 HOH E 8 108 8 HOH HOH . CA 7 HOH E 9 109 40 HOH HOH . CA 7 HOH E 10 110 205 HOH HOH . CA 7 HOH E 11 111 116 HOH HOH . CA 7 HOH E 12 112 228 HOH HOH . CA 7 HOH E 13 113 85 HOH HOH . CA 7 HOH E 14 114 207 HOH HOH . CA 7 HOH E 15 115 225 HOH HOH . CA 7 HOH E 16 116 67 HOH HOH . CA 7 HOH E 17 117 203 HOH HOH . CA 7 HOH E 18 118 90 HOH HOH . CA 7 HOH E 19 119 208 HOH HOH . CA 7 HOH E 20 120 230 HOH HOH . CA 7 HOH E 21 121 195 HOH HOH . CA 7 HOH E 22 122 30 HOH HOH . CA 7 HOH E 23 123 227 HOH HOH . CA 7 HOH E 24 124 226 HOH HOH . CA 7 HOH E 25 125 35 HOH HOH . CA 7 HOH E 26 126 188 HOH HOH . CA 7 HOH E 27 127 224 HOH HOH . CA 7 HOH E 28 128 134 HOH HOH . CA 7 HOH E 29 129 229 HOH HOH . DA 7 HOH F 1 201 221 HOH HOH . DA 7 HOH F 2 202 210 HOH HOH . DA 7 HOH F 3 203 197 HOH HOH . DA 7 HOH F 4 204 73 HOH HOH . DA 7 HOH F 5 205 95 HOH HOH . DA 7 HOH F 6 206 43 HOH HOH . DA 7 HOH F 7 207 61 HOH HOH . DA 7 HOH F 8 208 87 HOH HOH . DA 7 HOH F 9 209 209 HOH HOH . DA 7 HOH F 10 210 49 HOH HOH . DA 7 HOH F 11 211 193 HOH HOH . DA 7 HOH F 12 212 118 HOH HOH . DA 7 HOH F 13 213 26 HOH HOH . DA 7 HOH F 14 214 76 HOH HOH . DA 7 HOH F 15 215 192 HOH HOH . DA 7 HOH F 16 216 88 HOH HOH . DA 7 HOH F 17 217 202 HOH HOH . DA 7 HOH F 18 218 216 HOH HOH . DA 7 HOH F 19 219 204 HOH HOH . DA 7 HOH F 20 220 126 HOH HOH . DA 7 HOH F 21 221 102 HOH HOH . DA 7 HOH F 22 222 103 HOH HOH . DA 7 HOH F 23 223 55 HOH HOH . DA 7 HOH F 24 224 98 HOH HOH . EA 7 HOH G 1 101 39 HOH HOH . EA 7 HOH G 2 102 113 HOH HOH . EA 7 HOH G 3 103 89 HOH HOH . EA 7 HOH G 4 104 135 HOH HOH . EA 7 HOH G 5 105 83 HOH HOH . EA 7 HOH G 6 106 108 HOH HOH . EA 7 HOH G 7 107 64 HOH HOH . EA 7 HOH G 8 108 65 HOH HOH . EA 7 HOH G 9 109 13 HOH HOH . EA 7 HOH G 10 110 9 HOH HOH . EA 7 HOH G 11 111 212 HOH HOH . EA 7 HOH G 12 112 19 HOH HOH . EA 7 HOH G 13 113 213 HOH HOH . EA 7 HOH G 14 114 20 HOH HOH . EA 7 HOH G 15 115 114 HOH HOH . EA 7 HOH G 16 116 166 HOH HOH . EA 7 HOH G 17 117 16 HOH HOH . EA 7 HOH G 18 118 82 HOH HOH . EA 7 HOH G 19 119 217 HOH HOH . EA 7 HOH G 20 120 127 HOH HOH . EA 7 HOH G 21 121 41 HOH HOH . EA 7 HOH G 22 122 214 HOH HOH . EA 7 HOH G 23 123 167 HOH HOH . EA 7 HOH G 24 124 148 HOH HOH . EA 7 HOH G 25 125 78 HOH HOH . EA 7 HOH G 26 126 144 HOH HOH . EA 7 HOH G 27 127 215 HOH HOH . FA 7 HOH H 1 201 125 HOH HOH . FA 7 HOH H 2 202 50 HOH HOH . FA 7 HOH H 3 203 223 HOH HOH . FA 7 HOH H 4 204 206 HOH HOH . FA 7 HOH H 5 205 130 HOH HOH . FA 7 HOH H 6 206 23 HOH HOH . FA 7 HOH H 7 207 96 HOH HOH . FA 7 HOH H 8 208 109 HOH HOH . FA 7 HOH H 9 209 68 HOH HOH . FA 7 HOH H 10 210 46 HOH HOH . FA 7 HOH H 11 211 86 HOH HOH . FA 7 HOH H 12 212 191 HOH HOH . FA 7 HOH H 13 213 220 HOH HOH . FA 7 HOH H 14 214 21 HOH HOH . FA 7 HOH H 15 215 6 HOH HOH . FA 7 HOH H 16 216 56 HOH HOH . FA 7 HOH H 17 217 38 HOH HOH . FA 7 HOH H 18 218 18 HOH HOH . FA 7 HOH H 19 219 7 HOH HOH . FA 7 HOH H 20 220 34 HOH HOH . FA 7 HOH H 21 221 219 HOH HOH . FA 7 HOH H 22 222 190 HOH HOH . FA 7 HOH H 23 223 222 HOH HOH . FA 7 HOH H 24 224 94 HOH HOH . FA 7 HOH H 25 225 218 HOH HOH . FA 7 HOH H 26 226 121 HOH HOH . FA 7 HOH H 27 227 104 HOH HOH . FA 7 HOH H 28 228 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 4 _atom_site.Cartn_x -39.383 _atom_site.Cartn_y 22.886 _atom_site.Cartn_z -21.075 _atom_site.occupancy 0.31 _atom_site.B_iso_or_equiv 12.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 102 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #