data_8IQ4
#
_model_server_result.job_id            mgydWPrUetmcyyisT18eAg 
_model_server_result.datetime_utc      '2024-11-21 23:22:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iq4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8IQ4 
#
_exptl.entry_id    8IQ4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              368.508 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Z-7-[(1R,2R,3R,5S)-2-[(E,3S)-3-methyl-3-oxidanyl-oct-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8IQ4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8IQ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 116 R CYS 108 1_555 A SG CYS 194 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 E SG CYS 22 N CYS 22 1_555 E SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 E SG CYS 99 N CYS 99 1_555 E SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C21 H36 O5' 
_chem_comp.formula_weight    368.508 
_chem_comp.id                87Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Z-7-[(1R,2R,3R,5S)-2-[(E,3S)-3-methyl-3-oxidanyl-oct-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7-[3,5-Dihydroxy-2-(3-hydroxy-3-methyloct-1-enyl)cyclopentyl]hept-5-enoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O08 C06 87Q sing 1 n n 
O26 C25 87Q sing 2 n n 
C06 C09 87Q sing 3 n n 
C06 C07 87Q sing 4 n n 
C06 C05 87Q sing 5 n n 
C09 C10 87Q doub 6 e n 
C25 C24 87Q sing 7 n n 
C25 C11 87Q sing 8 n n 
C05 C04 87Q sing 9 n n 
C10 C11 87Q sing 10 n n 
C24 C22 87Q sing 11 n n 
C11 C12 87Q sing 12 n n 
C04 C03 87Q sing 13 n n 
C12 C22 87Q sing 14 n n 
C12 C13 87Q sing 15 n n 
C22 O23 87Q sing 16 n n 
C03 C02 87Q sing 17 n n 
C13 C14 87Q sing 18 n n 
C02 C01 87Q sing 19 n n 
C14 C15 87Q doub 20 z n 
C15 C16 87Q sing 21 n n 
C16 C17 87Q sing 22 n n 
C17 C18 87Q sing 23 n n 
O21 C19 87Q doub 24 n n 
C18 C19 87Q sing 25 n n 
C19 O20 87Q sing 26 n n 
C10 H1 87Q sing 27 n n 
C13 H3 87Q sing 28 n n 
C13 H4 87Q sing 29 n n 
C15 H5 87Q sing 30 n n 
C17 H7 87Q sing 31 n n 
C17 H8 87Q sing 32 n n 
C22 H9 87Q sing 33 n n 
C24 H10 87Q sing 34 n n 
C24 H11 87Q sing 35 n n 
C01 H12 87Q sing 36 n n 
C01 H13 87Q sing 37 n n 
C01 H14 87Q sing 38 n n 
C02 H15 87Q sing 39 n n 
C02 H16 87Q sing 40 n n 
C03 H17 87Q sing 41 n n 
C03 H18 87Q sing 42 n n 
C04 H19 87Q sing 43 n n 
C04 H20 87Q sing 44 n n 
C05 H21 87Q sing 45 n n 
C05 H22 87Q sing 46 n n 
C07 H23 87Q sing 47 n n 
C07 H24 87Q sing 48 n n 
C07 H25 87Q sing 49 n n 
C09 H26 87Q sing 50 n n 
C11 H28 87Q sing 51 n n 
C12 H29 87Q sing 52 n n 
C14 H30 87Q sing 53 n n 
C16 H32 87Q sing 54 n n 
C16 H33 87Q sing 55 n n 
C18 H34 87Q sing 56 n n 
C18 H35 87Q sing 57 n n 
C25 H36 87Q sing 58 n n 
O08 H37 87Q sing 59 n n 
O20 H38 87Q sing 60 n n 
O23 H39 87Q sing 61 n n 
O26 H40 87Q sing 62 n n 
#
_atom_sites.entry_id                     8IQ4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           87Q 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       87Q 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 87Q . . . F 6 130.774 134.211 169.768 1 57.32 ? C10 87Q 401 R 1 
HETATM 2 C C13 87Q . . . F 6 130.104 132.998 172.796 1 54.18 ? C13 87Q 401 R 1 
HETATM 3 C C15 87Q . . . F 6 130.125 131.773 174.917 1 56.13 ? C15 87Q 401 R 1 
HETATM 4 C C17 87Q . . . F 6 128.862 132.846 176.829 1 56.07 ? C17 87Q 401 R 1 
HETATM 5 C C22 87Q . . . F 6 128.487 131.653 171.421 1 57.42 ? C22 87Q 401 R 1 
HETATM 6 C C24 87Q . . . F 6 127.78 131.922 170.076 1 59.65 ? C24 87Q 401 R 1 
HETATM 7 C C01 87Q . . . F 6 136.393 137.21 173.674 1 52.33 ? C01 87Q 401 R 1 
HETATM 8 C C02 87Q . . . F 6 135.53 136.234 172.844 1 57.56 ? C02 87Q 401 R 1 
HETATM 9 C C03 87Q . . . F 6 134.517 136.972 171.935 1 57.73 ? C03 87Q 401 R 1 
HETATM 10 C C04 87Q . . . F 6 133.55 135.991 171.215 1 54.3 ? C04 87Q 401 R 1 
HETATM 11 C C05 87Q . . . F 6 133.529 136.209 169.677 1 56.13 ? C05 87Q 401 R 1 
HETATM 12 C C06 87Q . . . F 6 132.909 135.026 168.91 1 57.74 ? C06 87Q 401 R 1 
HETATM 13 C C07 87Q . . . F 6 133.392 133.707 169.519 1 60.05 ? C07 87Q 401 R 1 
HETATM 14 C C09 87Q . . . F 6 131.372 135.126 168.973 1 56.67 ? C09 87Q 401 R 1 
HETATM 15 C C11 87Q . . . F 6 129.501 133.598 170.38 1 55.58 ? C11 87Q 401 R 1 
HETATM 16 C C12 87Q . . . F 6 129.801 132.456 171.389 1 53.35 ? C12 87Q 401 R 1 
HETATM 17 C C14 87Q . . . F 6 130.655 131.829 173.675 1 56.94 ? C14 87Q 401 R 1 
HETATM 18 C C16 87Q . . . F 6 129.07 132.839 175.291 1 55.97 ? C16 87Q 401 R 1 
HETATM 19 C C18 87Q . . . F 6 127.489 132.244 177.208 1 60.72 ? C18 87Q 401 R 1 
HETATM 20 C C19 87Q . . . F 6 126.496 133.318 177.676 1 59.42 ? C19 87Q 401 R 1 
HETATM 21 C C25 87Q . . . F 6 128.706 132.867 169.29 1 56.42 ? C25 87Q 401 R 1 
HETATM 22 O O08 87Q . . . F 6 133.306 135.078 167.578 1 57.33 ? O08 87Q 401 R 1 
HETATM 23 O O20 87Q . . . F 6 125.74 133.092 178.661 1 60.57 ? O20 87Q 401 R 1 
HETATM 24 O O21 87Q . . . F 6 126.437 134.422 177.071 1 57.48 ? O21 87Q 401 R 1 
HETATM 25 O O23 87Q . . . F 6 127.652 132.106 172.51 1 54.32 ? O23 87Q 401 R 1 
HETATM 26 O O26 87Q . . . F 6 127.958 133.776 168.54 1 57.07 ? O26 87Q 401 R 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#