data_8IQ6 # _model_server_result.job_id Sczzy-jU-jQY7EQzGW_rXQ _model_server_result.datetime_utc '2024-11-21 18:54:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8IQ6 # _exptl.entry_id 8IQ6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 390.513 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Z-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(3R)-3-oxidanyl-5-phenyl-pentyl]cyclopentyl]hept-5-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IQ6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 E SG CYS 116 R CYS 108 1_555 E SG CYS 194 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C23 H34 O5' _chem_comp.formula_weight 390.513 _chem_comp.id 7WT _chem_comp.mon_nstd_flag . _chem_comp.name 'Z-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(3R)-3-oxidanyl-5-phenyl-pentyl]cyclopentyl]hept-5-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7-[3,5-Dihydroxy-2-(3-hydroxy-5-phenylpentyl)cyclopentyl]hept-5-enoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C26 7WT doub 1 n n C26 O27 7WT sing 2 n n C26 C25 7WT sing 3 n n C25 C24 7WT sing 4 n n C24 C23 7WT sing 5 n n C23 C22 7WT sing 6 n n C22 C21 7WT doub 7 z n C21 C20 7WT sing 8 n n C17 C16 7WT doub 9 n y C17 C18 7WT sing 10 n y C16 C15 7WT sing 11 n y C20 C03 7WT sing 12 n n C18 C13 7WT doub 13 n y C15 C14 7WT doub 14 n y O01 C02 7WT sing 15 n n C13 C14 7WT sing 16 n y C13 C12 7WT sing 17 n n C03 C02 7WT sing 18 n n C03 C04 7WT sing 19 n n C02 C06 7WT sing 20 n n C12 C11 7WT sing 21 n n C11 C10 7WT sing 22 n n C04 C08 7WT sing 23 n n C04 C05 7WT sing 24 n n C08 C09 7WT sing 25 n n C06 C05 7WT sing 26 n n C05 O07 7WT sing 27 n n C10 C09 7WT sing 28 n n C10 O19 7WT sing 29 n n C10 H1 7WT sing 30 n n C15 H2 7WT sing 31 n n C17 H3 7WT sing 32 n n C20 H4 7WT sing 33 n n C20 H5 7WT sing 34 n n C21 H6 7WT sing 35 n n C22 H8 7WT sing 36 n n C24 H10 7WT sing 37 n n C24 H11 7WT sing 38 n n C02 H12 7WT sing 39 n n C03 H13 7WT sing 40 n n C04 H14 7WT sing 41 n n C05 H15 7WT sing 42 n n C06 H16 7WT sing 43 n n C06 H17 7WT sing 44 n n C08 H18 7WT sing 45 n n C08 H19 7WT sing 46 n n C09 H20 7WT sing 47 n n C09 H21 7WT sing 48 n n C11 H22 7WT sing 49 n n C11 H23 7WT sing 50 n n C12 H24 7WT sing 51 n n C12 H25 7WT sing 52 n n C14 H26 7WT sing 53 n n C16 H27 7WT sing 54 n n C18 H28 7WT sing 55 n n C23 H29 7WT sing 56 n n C23 H30 7WT sing 57 n n C25 H31 7WT sing 58 n n C25 H32 7WT sing 59 n n O01 H33 7WT sing 60 n n O07 H34 7WT sing 61 n n O19 H35 7WT sing 62 n n O27 H36 7WT sing 63 n n # _atom_sites.entry_id 8IQ6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id 7WT _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id 7WT _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7WT . . . F 6 146.164 134.255 111.038 1 56.94 ? C10 7WT 401 R 1 HETATM 2 C C13 7WT . . . F 6 145.111 136.863 108.398 1 52.24 ? C13 7WT 401 R 1 HETATM 3 C C15 7WT . . . F 6 142.872 137.281 107.637 1 52.78 ? C15 7WT 401 R 1 HETATM 4 C C17 7WT . . . F 6 144.736 138.231 106.46 1 55.07 ? C17 7WT 401 R 1 HETATM 5 C C20 7WT . . . F 6 149.703 132.745 107.171 1 56.06 ? C20 7WT 401 R 1 HETATM 6 C C21 7WT . . . F 6 149.058 131.711 106.203 1 56.78 ? C21 7WT 401 R 1 HETATM 7 C C22 7WT . . . F 6 149.215 131.994 104.92 1 56.13 ? C22 7WT 401 R 1 HETATM 8 C C24 7WT . . . F 6 150.939 133.005 103.361 1 55.25 ? C24 7WT 401 R 1 HETATM 9 C C26 7WT . . . F 6 153.398 133.454 102.811 1 59.61 ? C26 7WT 401 R 1 HETATM 10 C C02 7WT . . . F 6 151.446 131.722 108.715 1 56.82 ? C02 7WT 401 R 1 HETATM 11 C C03 7WT . . . F 6 149.952 132.04 108.537 1 56.8 ? C03 7WT 401 R 1 HETATM 12 C C04 7WT . . . F 6 149.625 132.975 109.718 1 56.4 ? C04 7WT 401 R 1 HETATM 13 C C05 7WT . . . F 6 150.413 132.333 110.88 1 57.83 ? C05 7WT 401 R 1 HETATM 14 C C06 7WT . . . F 6 151.723 131.828 110.233 1 59.38 ? C06 7WT 401 R 1 HETATM 15 C C08 7WT . . . F 6 148.115 132.95 110.007 1 59.35 ? C08 7WT 401 R 1 HETATM 16 C C09 7WT . . . F 6 147.682 134.007 111.064 1 58.5 ? C09 7WT 401 R 1 HETATM 17 C C11 7WT . . . F 6 145.753 134.706 109.633 1 54.16 ? C11 7WT 401 R 1 HETATM 18 C C12 7WT . . . F 6 146.085 136.201 109.397 1 52.26 ? C12 7WT 401 R 1 HETATM 19 C C14 7WT . . . F 6 143.743 136.685 108.539 1 52.82 ? C14 7WT 401 R 1 HETATM 20 C C16 7WT . . . F 6 143.367 138.054 106.599 1 53.31 ? C16 7WT 401 R 1 HETATM 21 C C18 7WT . . . F 6 145.608 137.635 107.359 1 55.55 ? C18 7WT 401 R 1 HETATM 22 C C23 7WT . . . F 6 149.992 133.285 104.558 1 54.96 ? C23 7WT 401 R 1 HETATM 23 C C25 7WT . . . F 6 152.061 134.063 103.266 1 55.88 ? C25 7WT 401 R 1 HETATM 24 O O01 7WT . . . F 6 152.293 132.753 107.95 1 59.79 ? O01 7WT 401 R 1 HETATM 25 O O07 7WT . . . F 6 150.699 133.297 111.894 1 60.07 ? O07 7WT 401 R 1 HETATM 26 O O19 7WT . . . F 6 145.847 135.257 111.948 1 55.78 ? O19 7WT 401 R 1 HETATM 27 O O27 7WT . . . F 6 154.483 133.976 103.185 1 61.15 ? O27 7WT 401 R 1 HETATM 28 O O28 7WT . . . F 6 153.406 132.432 102.07 1 59.75 ? O28 7WT 401 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #