data_8IRP # _model_server_result.job_id I5UVGtFdhS3uyM9dxQeLhQ _model_server_result.datetime_utc '2024-11-21 14:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8irp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 8IRP # _exptl.entry_id 8IRP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 215.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(FURAN-2-YLMETHYL)-7H-PURIN-6-AMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IRP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 2 n D NAG 1 D 1 NAG D 1 NAG 2 n D NAG 2 D 2 NAG D 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 B CYS 78 1_555 A SG CYS 123 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 83 B CYS 83 1_555 A SG CYS 111 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 87 B CYS 87 1_555 A SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 254 B CYS 254 1_555 A SG CYS 287 B CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 78 A CYS 78 1_555 B SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 83 A CYS 83 1_555 B SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 87 A CYS 87 1_555 B SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 254 A CYS 254 1_555 B SG CYS 287 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 270 B ASN 270 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale2 B ND2 ASN 270 A ASN 270 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C10 H9 N5 O' _chem_comp.formula_weight 215.211 _chem_comp.id H35 _chem_comp.mon_nstd_flag . _chem_comp.name N-(FURAN-2-YLMETHYL)-7H-PURIN-6-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAM CAO H35 sing 129 n n CAO CAN H35 doub 130 n n CAN OAL H35 sing 131 n n CAM CAK H35 doub 132 n n OAL CAK H35 sing 133 n n CAK CAP H35 sing 134 n n CAP N6 H35 sing 135 n n N6 C6 H35 sing 136 n n C6 N1 H35 sing 137 n n N1 C2 H35 doub 138 n n C2 N3 H35 sing 139 n n N3 C4 H35 doub 140 n n C6 C5 H35 doub 141 n n C4 C5 H35 sing 142 n n C5 N7 H35 sing 143 n n N7 C8 H35 sing 144 n n C4 N9 H35 sing 145 n n C8 N9 H35 doub 146 n n CAM HAM H35 sing 147 n n CAO HAO H35 sing 148 n n CAN HAN H35 sing 149 n n CAP HAP1 H35 sing 150 n n CAP HAP2 H35 sing 151 n n N6 H6 H35 sing 152 n n C2 H2 H35 sing 153 n n N7 H7 H35 sing 154 n n C8 H8 H35 sing 155 n n # _atom_sites.entry_id 8IRP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 H35 B 1 701 601 H35 KT . F 3 H35 A 1 701 601 H35 KT . G 4 HOH B 1 801 602 HOH HOH . H 4 HOH A 1 801 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAM H35 . . . E 3 99.965 118.012 95.032 1 36.53 ? CAM H35 701 B 1 HETATM 2 C CAO H35 . . . E 3 100.039 116.783 94.396 1 36.53 ? CAO H35 701 B 1 HETATM 3 C CAN H35 . . . E 3 98.75 116.42 94.048 1 36.53 ? CAN H35 701 B 1 HETATM 4 O OAL H35 . . . E 3 97.936 117.399 94.461 1 36.53 ? OAL H35 701 B 1 HETATM 5 C CAK H35 . . . E 3 98.629 118.378 95.064 1 36.53 ? CAK H35 701 B 1 HETATM 6 C CAP H35 . . . E 3 98.051 119.661 95.661 1 36.53 ? CAP H35 701 B 1 HETATM 7 N N6 H35 . . . E 3 96.603 119.588 95.702 1 36.53 ? N6 H35 701 B 1 HETATM 8 C C6 H35 . . . E 3 95.853 119.693 94.469 1 36.53 ? C6 H35 701 B 1 HETATM 9 N N1 H35 . . . E 3 96.477 120.085 93.372 1 36.53 ? N1 H35 701 B 1 HETATM 10 C C2 H35 . . . E 3 95.832 120.19 92.224 1 36.53 ? C2 H35 701 B 1 HETATM 11 N N3 H35 . . . E 3 94.551 119.903 92.144 1 36.53 ? N3 H35 701 B 1 HETATM 12 C C4 H35 . . . E 3 93.835 119.489 93.222 1 36.53 ? C4 H35 701 B 1 HETATM 13 C C5 H35 . . . E 3 94.467 119.371 94.421 1 36.53 ? C5 H35 701 B 1 HETATM 14 N N7 H35 . . . E 3 93.527 118.947 95.304 1 36.53 ? N7 H35 701 B 1 HETATM 15 C C8 H35 . . . E 3 92.361 118.811 94.674 1 36.53 ? C8 H35 701 B 1 HETATM 16 N N9 H35 . . . E 3 92.537 119.14 93.398 1 36.53 ? N9 H35 701 B 1 HETATM 17 H HAM H35 . . . E 3 100.679 118.499 95.375 1 36.53 ? HAM H35 701 B 1 HETATM 18 H HAO H35 . . . E 3 100.812 116.292 94.234 1 36.53 ? HAO H35 701 B 1 HETATM 19 H HAN H35 . . . E 3 98.497 115.64 93.609 1 36.53 ? HAN H35 701 B 1 HETATM 20 H HAP1 H35 . . . E 3 98.322 120.419 95.119 1 36.53 ? HAP1 H35 701 B 1 HETATM 21 H HAP2 H35 . . . E 3 98.39 119.776 96.562 1 36.53 ? HAP2 H35 701 B 1 HETATM 22 H H6 H35 . . . E 3 96.196 119.482 96.45 1 36.53 ? H6 H35 701 B 1 HETATM 23 H H2 H35 . . . E 3 96.289 120.471 91.464 1 36.53 ? H2 H35 701 B 1 HETATM 24 H H7 H35 . . . E 3 93.659 118.79 96.135 1 36.53 ? H7 H35 701 B 1 HETATM 25 H H8 H35 . . . E 3 91.562 118.533 95.06 1 36.53 ? H8 H35 701 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #