data_8IRR # _model_server_result.job_id ymYSpExQRGrlYSeUv1b5TA _model_server_result.datetime_utc '2024-11-13 06:32:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8irr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8IRR # _exptl.entry_id 8IRR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 315.473 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Rotigotine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 23 N CYS 22 1_555 D SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 100 N CYS 99 1_555 D SG CYS 108 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 E SG CYS 144 R CYS 96 1_555 E SG CYS 234 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C19 H25 N O S' _chem_comp.formula_weight 315.473 _chem_comp.id R5F _chem_comp.mon_nstd_flag . _chem_comp.name Rotigotine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (6~{S})-6-[propyl(2-thiophen-2-ylethyl)amino]-5,6,7,8-tetrahydronaphthalen-1-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 R5F sing 354 n n C2 C3 R5F sing 355 n n C3 N1 R5F sing 356 n n N1 C4 R5F sing 357 n n N1 C10 R5F sing 358 n n C4 C5 R5F sing 359 n n C15 C10 R5F sing 360 n n C15 C14 R5F sing 361 n n C10 C11 R5F sing 362 n n C16 C14 R5F doub 363 n y C16 C17 R5F sing 364 n y S1 C9 R5F sing 365 n y S1 C6 R5F sing 366 n y C14 C13 R5F sing 367 n y C17 C18 R5F doub 368 n y C9 C8 R5F doub 369 n y C5 C6 R5F sing 370 n n C6 C7 R5F doub 371 n y C8 C7 R5F sing 372 n y C13 C12 R5F sing 373 n n C13 C19 R5F doub 374 n y C11 C12 R5F sing 375 n n C18 C19 R5F sing 376 n y C19 O1 R5F sing 377 n n C4 H2 R5F sing 378 n n C4 H3 R5F sing 379 n n C5 H4 R5F sing 380 n n C5 H5 R5F sing 381 n n C7 H6 R5F sing 382 n n C8 H7 R5F sing 383 n n C10 H8 R5F sing 384 n n C15 H9 R5F sing 385 n n C15 H10 R5F sing 386 n n C17 H11 R5F sing 387 n n C1 H12 R5F sing 388 n n C1 H13 R5F sing 389 n n C1 H14 R5F sing 390 n n O1 H15 R5F sing 391 n n C2 H16 R5F sing 392 n n C2 H17 R5F sing 393 n n C3 H18 R5F sing 394 n n C3 H19 R5F sing 395 n n C9 H20 R5F sing 396 n n C11 H21 R5F sing 397 n n C11 H22 R5F sing 398 n n C12 H23 R5F sing 399 n n C12 H24 R5F sing 400 n n C16 H25 R5F sing 401 n n C18 H26 R5F sing 402 n n # _atom_sites.entry_id 8IRR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 R5F R 1 501 501 R5F LIG . G 7 CLR R 1 502 1 CLR CLR . H 7 CLR R 1 503 2 CLR CLR . I 7 CLR R 1 504 3 CLR CLR . J 8 HOH R 1 601 1 HOH HOH . J 8 HOH R 2 602 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 R5F . . . F 6 101.088 79.872 112.169 1 70.05 ? N1 R5F 501 R 1 HETATM 2 C C4 R5F . . . F 6 101.416 78.395 112.361 1 72.02 ? C4 R5F 501 R 1 HETATM 3 C C5 R5F . . . F 6 102.369 78.106 113.529 1 74.54 ? C5 R5F 501 R 1 HETATM 4 C C6 R5F . . . F 6 102.706 76.655 113.567 1 72.72 ? C6 R5F 501 R 1 HETATM 5 C C7 R5F . . . F 6 101.764 75.7 114.052 1 76.67 ? C7 R5F 501 R 1 HETATM 6 C C8 R5F . . . F 6 102.287 74.426 113.953 1 79.68 ? C8 R5F 501 R 1 HETATM 7 C C10 R5F . . . F 6 99.696 80.275 112.644 1 72.99 ? C10 R5F 501 R 1 HETATM 8 C C13 R5F . . . F 6 97.415 81.452 114.071 1 67.64 ? C13 R5F 501 R 1 HETATM 9 C C15 R5F . . . F 6 99.452 81.797 112.542 1 73.88 ? C15 R5F 501 R 1 HETATM 10 C C17 R5F . . . F 6 96.441 83.977 113.358 1 75.34 ? C17 R5F 501 R 1 HETATM 11 C C1 R5F . . . F 6 101.023 79.822 108.285 1 77.56 ? C1 R5F 501 R 1 HETATM 12 O O1 R5F . . . F 6 95.463 81.15 115.439 1 75.84 ? O1 R5F 501 R 1 HETATM 13 S S1 R5F . . . F 6 104.188 75.949 113.013 1 81.37 ? S1 R5F 501 R 1 HETATM 14 C C2 R5F . . . F 6 100.455 79.591 109.688 1 72.08 ? C2 R5F 501 R 1 HETATM 15 C C3 R5F . . . F 6 101.353 80.268 110.731 1 74.01 ? C3 R5F 501 R 1 HETATM 16 C C9 R5F . . . F 6 103.542 74.41 113.422 1 81.87 ? C9 R5F 501 R 1 HETATM 17 C C11 R5F . . . F 6 99.401 79.831 114.09 1 71.77 ? C11 R5F 501 R 1 HETATM 18 C C12 R5F . . . F 6 97.939 80.091 114.486 1 63.2 ? C12 R5F 501 R 1 HETATM 19 C C14 R5F . . . F 6 98.141 82.256 113.169 1 77.72 ? C14 R5F 501 R 1 HETATM 20 C C16 R5F . . . F 6 97.659 83.532 112.85 1 78.62 ? C16 R5F 501 R 1 HETATM 21 C C18 R5F . . . F 6 95.682 83.149 114.182 1 75.49 ? C18 R5F 501 R 1 HETATM 22 C C19 R5F . . . F 6 96.178 81.905 114.562 1 72.72 ? C19 R5F 501 R 1 HETATM 23 H H2 R5F . . . F 6 101.877 78.026 111.445 1 72.02 ? H2 R5F 501 R 1 HETATM 24 H H3 R5F . . . F 6 100.486 77.85 112.527 1 72.02 ? H3 R5F 501 R 1 HETATM 25 H H4 R5F . . . F 6 103.283 78.685 113.4 1 74.54 ? H4 R5F 501 R 1 HETATM 26 H H5 R5F . . . F 6 101.89 78.391 114.466 1 74.54 ? H5 R5F 501 R 1 HETATM 27 H H6 R5F . . . F 6 100.785 75.939 114.44 1 76.67 ? H6 R5F 501 R 1 HETATM 28 H H7 R5F . . . F 6 101.758 73.537 114.263 1 79.68 ? H7 R5F 501 R 1 HETATM 29 H H8 R5F . . . F 6 98.972 79.782 111.995 1 72.99 ? H8 R5F 501 R 1 HETATM 30 H H9 R5F . . . F 6 99.455 82.082 111.49 1 73.88 ? H9 R5F 501 R 1 HETATM 31 H H10 R5F . . . F 6 100.271 82.31 113.046 1 73.88 ? H10 R5F 501 R 1 HETATM 32 H H11 R5F . . . F 6 96.084 84.966 113.113 1 75.34 ? H11 R5F 501 R 1 HETATM 33 H H12 R5F . . . F 6 100.381 79.339 107.548 1 77.56 ? H12 R5F 501 R 1 HETATM 34 H H13 R5F . . . F 6 101.066 80.892 108.083 1 77.56 ? H13 R5F 501 R 1 HETATM 35 H H14 R5F . . . F 6 102.026 79.4 108.225 1 77.56 ? H14 R5F 501 R 1 HETATM 36 H H15 R5F . . . F 6 96.045 80.826 116.131 1 75.84 ? H15 R5F 501 R 1 HETATM 37 H H16 R5F . . . F 6 99.452 80.013 109.746 1 72.08 ? H16 R5F 501 R 1 HETATM 38 H H17 R5F . . . F 6 100.41 78.521 109.889 1 72.08 ? H17 R5F 501 R 1 HETATM 39 H H18 R5F . . . F 6 101.212 81.346 110.647 1 74.01 ? H18 R5F 501 R 1 HETATM 40 H H19 R5F . . . F 6 102.392 80.036 110.495 1 74.01 ? H19 R5F 501 R 1 HETATM 41 H H20 R5F . . . F 6 104.092 73.494 113.269 1 81.87 ? H20 R5F 501 R 1 HETATM 42 H H21 R5F . . . F 6 100.052 80.383 114.767 1 71.77 ? H21 R5F 501 R 1 HETATM 43 H H22 R5F . . . F 6 99.611 78.766 114.185 1 71.77 ? H22 R5F 501 R 1 HETATM 44 H H23 R5F . . . F 6 97.317 79.328 114.017 1 63.2 ? H23 R5F 501 R 1 HETATM 45 H H24 R5F . . . F 6 97.849 79.998 115.568 1 63.2 ? H24 R5F 501 R 1 HETATM 46 H H25 R5F . . . F 6 98.237 84.176 112.204 1 78.62 ? H25 R5F 501 R 1 HETATM 47 H H26 R5F . . . F 6 94.71 83.472 114.525 1 75.49 ? H26 R5F 501 R 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 47 #