data_8IRS
#
_model_server_result.job_id            ei_yw8JSHOXEHa3E68ZOJg 
_model_server_result.datetime_utc      '2024-11-21 22:57:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8irs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8IRS 
#
_exptl.entry_id    8IRS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              315.473 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Rotigotine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 C SG CYS 159 E CYS 159 1_555 C SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 E SG CYS 252 R CYS 107 1_555 E SG CYS 327 R CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 E SG CYS 544 R CYS 399 1_555 E SG CYS 546 R CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C19 H25 N O S' 
_chem_comp.formula_weight    315.473 
_chem_comp.id                R5F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Rotigotine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (6~{S})-6-[propyl(2-thiophen-2-ylethyl)amino]-5,6,7,8-tetrahydronaphthalen-1-ol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 R5F sing 275 n n 
C2 C3 R5F sing 276 n n 
C3 N1 R5F sing 277 n n 
N1 C4 R5F sing 278 n n 
N1 C10 R5F sing 279 n n 
C4 C5 R5F sing 280 n n 
C15 C10 R5F sing 281 n n 
C15 C14 R5F sing 282 n n 
C10 C11 R5F sing 283 n n 
C16 C14 R5F doub 284 n y 
C16 C17 R5F sing 285 n y 
S1 C9 R5F sing 286 n y 
S1 C6 R5F sing 287 n y 
C14 C13 R5F sing 288 n y 
C17 C18 R5F doub 289 n y 
C9 C8 R5F doub 290 n y 
C5 C6 R5F sing 291 n n 
C6 C7 R5F doub 292 n y 
C8 C7 R5F sing 293 n y 
C13 C12 R5F sing 294 n n 
C13 C19 R5F doub 295 n y 
C11 C12 R5F sing 296 n n 
C18 C19 R5F sing 297 n y 
C19 O1 R5F sing 298 n n 
C4 H2 R5F sing 299 n n 
C4 H3 R5F sing 300 n n 
C5 H4 R5F sing 301 n n 
C5 H5 R5F sing 302 n n 
C7 H6 R5F sing 303 n n 
C8 H7 R5F sing 304 n n 
C10 H8 R5F sing 305 n n 
C15 H9 R5F sing 306 n n 
C15 H10 R5F sing 307 n n 
C17 H11 R5F sing 308 n n 
C1 H12 R5F sing 309 n n 
C1 H13 R5F sing 310 n n 
C1 H14 R5F sing 311 n n 
O1 H15 R5F sing 312 n n 
C2 H16 R5F sing 313 n n 
C2 H17 R5F sing 314 n n 
C3 H18 R5F sing 315 n n 
C3 H19 R5F sing 316 n n 
C9 H20 R5F sing 317 n n 
C11 H21 R5F sing 318 n n 
C11 H22 R5F sing 319 n n 
C12 H23 R5F sing 320 n n 
C12 H24 R5F sing 321 n n 
C16 H25 R5F sing 322 n n 
C18 H26 R5F sing 323 n n 
#
_atom_sites.entry_id                     8IRS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           R5F 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       R5F 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 R5F . . . F 6 97.644 123.077 122.319 1 116.48 ? N1 R5F 501 R 1 
HETATM 2 C C4 R5F . . . F 6 97.344 123.807 123.644 1 119.85 ? C4 R5F 501 R 1 
HETATM 3 C C5 R5F . . . F 6 95.894 123.699 124.179 1 118.32 ? C5 R5F 501 R 1 
HETATM 4 C C6 R5F . . . F 6 95.385 125.007 124.726 1 119.87 ? C6 R5F 501 R 1 
HETATM 5 C C7 R5F . . . F 6 96.226 126.163 124.72 1 120.07 ? C7 R5F 501 R 1 
HETATM 6 C C8 R5F . . . F 6 95.594 127.23 125.333 1 120.69 ? C8 R5F 501 R 1 
HETATM 7 C C10 R5F . . . F 6 99.149 123.061 121.966 1 112.71 ? C10 R5F 501 R 1 
HETATM 8 C C13 R5F . . . F 6 102.021 122.465 121.611 1 113.76 ? C13 R5F 501 R 1 
HETATM 9 C C15 R5F . . . F 6 99.58 121.804 121.179 1 112.22 ? C15 R5F 501 R 1 
HETATM 10 C C17 R5F . . . F 6 102.843 120.959 119.387 1 119.43 ? C17 R5F 501 R 1 
HETATM 11 C C1 R5F . . . F 6 95.904 124.009 118.889 1 118.92 ? C1 R5F 501 R 1 
HETATM 12 O O1 R5F . . . F 6 104.347 122.939 122.051 1 119.77 ? O1 R5F 501 R 1 
HETATM 13 S S1 R5F . . . F 6 93.849 125.3 125.495 1 132.35 ? S1 R5F 501 R 1 
HETATM 14 C C2 R5F . . . F 6 96.901 123.254 119.793 1 116.4 ? C2 R5F 501 R 1 
HETATM 15 C C3 R5F . . . F 6 96.811 123.778 121.235 1 114.43 ? C3 R5F 501 R 1 
HETATM 16 C C9 R5F . . . F 6 94.346 126.918 125.786 1 117.77 ? C9 R5F 501 R 1 
HETATM 17 C C11 R5F . . . F 6 100.109 123.179 123.174 1 114.8 ? C11 R5F 501 R 1 
HETATM 18 C C12 R5F . . . F 6 101.57 123.379 122.738 1 113.1 ? C12 R5F 501 R 1 
HETATM 19 C C14 R5F . . . F 6 101.063 121.8 120.821 1 114.88 ? C14 R5F 501 R 1 
HETATM 20 C C16 R5F . . . F 6 101.486 121.083 119.696 1 120.97 ? C16 R5F 501 R 1 
HETATM 21 C C18 R5F . . . F 6 103.797 121.56 120.212 1 117.73 ? C18 R5F 501 R 1 
HETATM 22 C C19 R5F . . . F 6 103.39 122.325 121.303 1 117.83 ? C19 R5F 501 R 1 
HETATM 23 H H2 R5F . . . F 6 97.993 123.394 124.416 1 118.49 ? H2 R5F 501 R 1 
HETATM 24 H H3 R5F . . . F 6 97.606 124.856 123.51 1 119.12 ? H3 R5F 501 R 1 
HETATM 25 H H4 R5F . . . F 6 95.212 123.345 123.398 1 119.07 ? H4 R5F 501 R 1 
HETATM 26 H H5 R5F . . . F 6 95.866 122.934 124.962 1 118.11 ? H5 R5F 501 R 1 
HETATM 27 H H6 R5F . . . F 6 97.223 126.194 124.296 1 118.56 ? H6 R5F 501 R 1 
HETATM 28 H H7 R5F . . . F 6 96.05 128.207 125.437 1 118.98 ? H7 R5F 501 R 1 
HETATM 29 H H8 R5F . . . F 6 99.332 123.922 121.322 1 118.5 ? H8 R5F 501 R 1 
HETATM 30 H H9 R5F . . . F 6 98.983 121.69 120.267 1 117.85 ? H9 R5F 501 R 1 
HETATM 31 H H10 R5F . . . F 6 99.356 120.917 121.783 1 117.92 ? H10 R5F 501 R 1 
HETATM 32 H H11 R5F . . . F 6 103.15 120.398 118.509 1 117.73 ? H11 R5F 501 R 1 
HETATM 33 H H12 R5F . . . F 6 95.752 123.493 117.934 1 118.7 ? H12 R5F 501 R 1 
HETATM 34 H H13 R5F . . . F 6 96.254 125.027 118.683 1 118.96 ? H13 R5F 501 R 1 
HETATM 35 H H14 R5F . . . F 6 94.919 124.087 119.365 1 119.15 ? H14 R5F 501 R 1 
HETATM 36 H H15 R5F . . . F 6 103.885 123.533 122.665 1 119.75 ? H15 R5F 501 R 1 
HETATM 37 H H16 R5F . . . F 6 96.682 122.18 119.773 1 118.32 ? H16 R5F 501 R 1 
HETATM 38 H H17 R5F . . . F 6 97.911 123.402 119.394 1 118.46 ? H17 R5F 501 R 1 
HETATM 39 H H18 R5F . . . F 6 95.766 123.711 121.537 1 118.2 ? H18 R5F 501 R 1 
HETATM 40 H H19 R5F . . . F 6 97.085 124.834 121.234 1 118.61 ? H19 R5F 501 R 1 
HETATM 41 H H20 R5F . . . F 6 93.687 127.618 126.292 1 118.27 ? H20 R5F 501 R 1 
HETATM 42 H H21 R5F . . . F 6 99.854 124.034 123.811 1 118.73 ? H21 R5F 501 R 1 
HETATM 43 H H22 R5F . . . F 6 100.025 122.279 123.794 1 118.77 ? H22 R5F 501 R 1 
HETATM 44 H H23 R5F . . . F 6 101.685 124.415 122.398 1 118.29 ? H23 R5F 501 R 1 
HETATM 45 H H24 R5F . . . F 6 102.213 123.251 123.615 1 118.84 ? H24 R5F 501 R 1 
HETATM 46 H H25 R5F . . . F 6 100.751 120.625 119.041 1 118.33 ? H25 R5F 501 R 1 
HETATM 47 H H26 R5F . . . F 6 104.855 121.461 119.992 1 118.42 ? H26 R5F 501 R 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           392 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           47 
#