data_8IRT
#
_model_server_result.job_id            PxWI3yO-Y3W2F2PYsYlMYQ 
_model_server_result.datetime_utc      '2024-12-27 11:01:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8irt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8IRT 
#
_exptl.entry_id    8IRT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              315.473 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Rotigotine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 C SG CYS 159 E CYS 159 1_555 C SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 E SG CYS 248 R CYS 103 1_555 E SG CYS 326 R CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 E SG CYS 500 R CYS 355 1_555 E SG CYS 503 R CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C19 H25 N O S' 
_chem_comp.formula_weight    315.473 
_chem_comp.id                R5F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Rotigotine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (6~{S})-6-[propyl(2-thiophen-2-ylethyl)amino]-5,6,7,8-tetrahydronaphthalen-1-ol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 R5F sing 277 n n 
C2 C3 R5F sing 278 n n 
C3 N1 R5F sing 279 n n 
N1 C4 R5F sing 280 n n 
N1 C10 R5F sing 281 n n 
C4 C5 R5F sing 282 n n 
C15 C10 R5F sing 283 n n 
C15 C14 R5F sing 284 n n 
C10 C11 R5F sing 285 n n 
C16 C14 R5F doub 286 n y 
C16 C17 R5F sing 287 n y 
S1 C9 R5F sing 288 n y 
S1 C6 R5F sing 289 n y 
C14 C13 R5F sing 290 n y 
C17 C18 R5F doub 291 n y 
C9 C8 R5F doub 292 n y 
C5 C6 R5F sing 293 n n 
C6 C7 R5F doub 294 n y 
C8 C7 R5F sing 295 n y 
C13 C12 R5F sing 296 n n 
C13 C19 R5F doub 297 n y 
C11 C12 R5F sing 298 n n 
C18 C19 R5F sing 299 n y 
C19 O1 R5F sing 300 n n 
C4 H2 R5F sing 301 n n 
C4 H3 R5F sing 302 n n 
C5 H4 R5F sing 303 n n 
C5 H5 R5F sing 304 n n 
C7 H6 R5F sing 305 n n 
C8 H7 R5F sing 306 n n 
C10 H8 R5F sing 307 n n 
C15 H9 R5F sing 308 n n 
C15 H10 R5F sing 309 n n 
C17 H11 R5F sing 310 n n 
C1 H12 R5F sing 311 n n 
C1 H13 R5F sing 312 n n 
C1 H14 R5F sing 313 n n 
O1 H15 R5F sing 314 n n 
C2 H16 R5F sing 315 n n 
C2 H17 R5F sing 316 n n 
C3 H18 R5F sing 317 n n 
C3 H19 R5F sing 318 n n 
C9 H20 R5F sing 319 n n 
C11 H21 R5F sing 320 n n 
C11 H22 R5F sing 321 n n 
C12 H23 R5F sing 322 n n 
C12 H24 R5F sing 323 n n 
C16 H25 R5F sing 324 n n 
C18 H26 R5F sing 325 n n 
#
_atom_sites.entry_id                     8IRT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 R5F R 1 501 1 R5F LIG . 
G 7 HOH R 1 601 1 HOH HOH . 
G 7 HOH R 2 602 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 R5F . . . F 6 107.421 128.615 120.487 1 0.5 ? N1 R5F 501 R 1 
HETATM 2 C C4 R5F . . . F 6 107.129 129.753 121.476 1 0.5 ? C4 R5F 501 R 1 
HETATM 3 C C5 R5F . . . F 6 107.693 129.612 122.901 1 0.5 ? C5 R5F 501 R 1 
HETATM 4 C C6 R5F . . . F 6 106.572 129.8 123.872 1 0.5 ? C6 R5F 501 R 1 
HETATM 5 C C7 R5F . . . F 6 106.559 130.939 124.735 1 0.5 ? C7 R5F 501 R 1 
HETATM 6 C C8 R5F . . . F 6 105.381 130.992 125.456 1 0.5 ? C8 R5F 501 R 1 
HETATM 7 C C10 R5F . . . F 6 108.7 128.813 119.653 1 0.5 ? C10 R5F 501 R 1 
HETATM 8 C C13 R5F . . . F 6 111.339 128.865 118.398 1 0.5 ? C13 R5F 501 R 1 
HETATM 9 C C15 R5F . . . F 6 109.275 127.506 119.061 1 0.5 ? C15 R5F 501 R 1 
HETATM 10 C C17 R5F . . . F 6 111.999 126.937 116.467 1 0.5 ? C17 R5F 501 R 1 
HETATM 11 C C1 R5F . . . F 6 104.58 127.839 117.875 1 0.5 ? C1 R5F 501 R 1 
HETATM 12 O O1 R5F . . . F 6 113.354 130.06 117.794 1 0.5 ? O1 R5F 501 R 1 
HETATM 13 S S1 R5F . . . F 6 105.12 128.854 123.989 1 0.5 ? S1 R5F 501 R 1 
HETATM 14 C C2 R5F . . . F 6 105.98 127.639 118.492 1 0.5 ? C2 R5F 501 R 1 
HETATM 15 C C3 R5F . . . F 6 106.149 128.621 119.643 1 0.5 ? C3 R5F 501 R 1 
HETATM 16 C C9 R5F . . . F 6 104.538 129.964 125.163 1 0.5 ? C9 R5F 501 R 1 
HETATM 17 C C11 R5F . . . F 6 109.871 129.496 120.398 1 0.5 ? C11 R5F 501 R 1 
HETATM 18 C C12 R5F . . . F 6 110.954 129.935 119.401 1 0.5 ? C12 R5F 501 R 1 
HETATM 19 C C14 R5F . . . F 6 110.503 127.748 118.197 1 0.5 ? C14 R5F 501 R 1 
HETATM 20 C C16 R5F . . . F 6 110.835 126.804 117.219 1 0.5 ? C16 R5F 501 R 1 
HETATM 21 C C18 R5F . . . F 6 112.839 128.029 116.681 1 0.5 ? C18 R5F 501 R 1 
HETATM 22 C C19 R5F . . . F 6 112.514 128.996 117.635 1 0.5 ? C19 R5F 501 R 1 
HETATM 23 H H2 R5F . . . F 6 106.047 129.815 121.586 1 0.5 ? H2 R5F 501 R 1 
HETATM 24 H H3 R5F . . . F 6 107.448 130.699 121.039 1 0.5 ? H3 R5F 501 R 1 
HETATM 25 H H4 R5F . . . F 6 108.471 130.367 123.062 1 0.5 ? H4 R5F 501 R 1 
HETATM 26 H H5 R5F . . . F 6 108.183 128.646 123.072 1 0.5 ? H5 R5F 501 R 1 
HETATM 27 H H6 R5F . . . F 6 107.351 131.676 124.8 1 0.5 ? H6 R5F 501 R 1 
HETATM 28 H H7 R5F . . . F 6 105.158 131.777 126.168 1 0.5 ? H7 R5F 501 R 1 
HETATM 29 H H8 R5F . . . F 6 108.426 129.451 118.812 1 0.5 ? H8 R5F 501 R 1 
HETATM 30 H H9 R5F . . . F 6 109.557 126.837 119.882 1 0.5 ? H9 R5F 501 R 1 
HETATM 31 H H10 R5F . . . F 6 108.523 126.953 118.487 1 0.5 ? H10 R5F 501 R 1 
HETATM 32 H H11 R5F . . . F 6 112.245 126.198 115.711 1 0.5 ? H11 R5F 501 R 1 
HETATM 33 H H12 R5F . . . F 6 104.349 127.066 117.136 1 0.5 ? H12 R5F 501 R 1 
HETATM 34 H H13 R5F . . . F 6 104.501 128.816 117.39 1 0.5 ? H13 R5F 501 R 1 
HETATM 35 H H14 R5F . . . F 6 103.805 127.78 118.646 1 0.5 ? H14 R5F 501 R 1 
HETATM 36 H H15 R5F . . . F 6 112.857 130.825 118.127 1 0.5 ? H15 R5F 501 R 1 
HETATM 37 H H16 R5F . . . F 6 106.742 127.821 117.725 1 0.5 ? H16 R5F 501 R 1 
HETATM 38 H H17 R5F . . . F 6 106.091 126.614 118.862 1 0.5 ? H17 R5F 501 R 1 
HETATM 39 H H18 R5F . . . F 6 105.33 128.432 120.336 1 0.5 ? H18 R5F 501 R 1 
HETATM 40 H H19 R5F . . . F 6 106.015 129.628 119.249 1 0.5 ? H19 R5F 501 R 1 
HETATM 41 H H20 R5F . . . F 6 103.56 129.831 125.616 1 0.5 ? H20 R5F 501 R 1 
HETATM 42 H H21 R5F . . . F 6 109.553 130.396 120.937 1 0.5 ? H21 R5F 501 R 1 
HETATM 43 H H22 R5F . . . F 6 110.295 128.809 121.139 1 0.5 ? H22 R5F 501 R 1 
HETATM 44 H H23 R5F . . . F 6 111.832 130.291 119.953 1 0.5 ? H23 R5F 501 R 1 
HETATM 45 H H24 R5F . . . F 6 110.567 130.797 118.846 1 0.5 ? H24 R5F 501 R 1 
HETATM 46 H H25 R5F . . . F 6 110.183 125.957 117.035 1 0.5 ? H25 R5F 501 R 1 
HETATM 47 H H26 R5F . . . F 6 113.736 128.139 116.079 1 0.5 ? H26 R5F 501 R 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           47 
#