data_8IRU
#
_model_server_result.job_id            L5C4_QwdXEkcSXNqq5IAlA 
_model_server_result.datetime_utc      '2024-10-20 20:28:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iru 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    8IRU 
#
_exptl.entry_id    8IRU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              315.473 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Rotigotine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 159 E CYS 159 1_555 C SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 E SG CYS 253 R CYS 108 1_555 E SG CYS 330 R CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 E SG CYS 565 R CYS 372 1_555 E SG CYS 568 R CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C19 H25 N O S' 
_chem_comp.formula_weight    315.473 
_chem_comp.id                R5F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Rotigotine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (6~{S})-6-[propyl(2-thiophen-2-ylethyl)amino]-5,6,7,8-tetrahydronaphthalen-1-ol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 R5F sing 352 n n 
C2 C3 R5F sing 353 n n 
C3 N1 R5F sing 354 n n 
N1 C4 R5F sing 355 n n 
N1 C10 R5F sing 356 n n 
C4 C5 R5F sing 357 n n 
C15 C10 R5F sing 358 n n 
C15 C14 R5F sing 359 n n 
C10 C11 R5F sing 360 n n 
C16 C14 R5F doub 361 n y 
C16 C17 R5F sing 362 n y 
S1 C9 R5F sing 363 n y 
S1 C6 R5F sing 364 n y 
C14 C13 R5F sing 365 n y 
C17 C18 R5F doub 366 n y 
C9 C8 R5F doub 367 n y 
C5 C6 R5F sing 368 n n 
C6 C7 R5F doub 369 n y 
C8 C7 R5F sing 370 n y 
C13 C12 R5F sing 371 n n 
C13 C19 R5F doub 372 n y 
C11 C12 R5F sing 373 n n 
C18 C19 R5F sing 374 n y 
C19 O1 R5F sing 375 n n 
C4 H2 R5F sing 376 n n 
C4 H3 R5F sing 377 n n 
C5 H4 R5F sing 378 n n 
C5 H5 R5F sing 379 n n 
C7 H6 R5F sing 380 n n 
C8 H7 R5F sing 381 n n 
C10 H8 R5F sing 382 n n 
C15 H9 R5F sing 383 n n 
C15 H10 R5F sing 384 n n 
C17 H11 R5F sing 385 n n 
C1 H12 R5F sing 386 n n 
C1 H13 R5F sing 387 n n 
C1 H14 R5F sing 388 n n 
O1 H15 R5F sing 389 n n 
C2 H16 R5F sing 390 n n 
C2 H17 R5F sing 391 n n 
C3 H18 R5F sing 392 n n 
C3 H19 R5F sing 393 n n 
C9 H20 R5F sing 394 n n 
C11 H21 R5F sing 395 n n 
C11 H22 R5F sing 396 n n 
C12 H23 R5F sing 397 n n 
C12 H24 R5F sing 398 n n 
C16 H25 R5F sing 399 n n 
C18 H26 R5F sing 400 n n 
#
_atom_sites.entry_id                     8IRU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 R5F R 1 601 501 R5F LIG . 
G 7 CLR R 1 602 1 CLR CLR . 
H 7 CLR R 1 603 2 CLR CLR . 
I 7 CLR R 1 604 3 CLR CLR . 
J 7 CLR R 1 605 4 CLR CLR . 
K 7 CLR R 1 606 5 CLR CLR . 
L 7 CLR R 1 607 6 CLR CLR . 
M 7 CLR R 1 608 7 CLR CLR . 
N 7 CLR R 1 609 8 CLR CLR . 
O 7 CLR R 1 610 9 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 R5F . . . F 6 124.976 132.055 121.75 1 82.79 ? N1 R5F 601 R 1 
HETATM 2 C C4 R5F . . . F 6 125.025 133.215 122.754 1 82.79 ? C4 R5F 601 R 1 
HETATM 3 C C5 R5F . . . F 6 125.706 132.896 124.097 1 82.79 ? C5 R5F 601 R 1 
HETATM 4 C C6 R5F . . . F 6 124.764 132.981 125.26 1 82.79 ? C6 R5F 601 R 1 
HETATM 5 C C7 R5F . . . F 6 124.852 134.073 126.176 1 82.79 ? C7 R5F 601 R 1 
HETATM 6 C C8 R5F . . . F 6 124.079 133.829 127.293 1 82.79 ? C8 R5F 601 R 1 
HETATM 7 C C10 R5F . . . F 6 126.243 131.82 120.946 1 82.79 ? C10 R5F 601 R 1 
HETATM 8 C C13 R5F . . . F 6 128.63 131.039 119.575 1 82.79 ? C13 R5F 601 R 1 
HETATM 9 C C15 R5F . . . F 6 126.276 130.422 120.307 1 82.79 ? C15 R5F 601 R 1 
HETATM 10 C C17 R5F . . . F 6 128.61 128.981 117.688 1 82.79 ? C17 R5F 601 R 1 
HETATM 11 C C1 R5F . . . F 6 121.439 132.552 120.228 1 82.79 ? C1 R5F 601 R 1 
HETATM 12 O O1 R5F . . . F 6 130.777 131.709 118.744 1 82.79 ? O1 R5F 601 R 1 
HETATM 13 S S1 R5F . . . F 6 123.72 131.714 125.82 1 82.79 ? S1 R5F 601 R 1 
HETATM 14 C C2 R5F . . . F 6 122.492 132.042 121.225 1 82.79 ? C2 R5F 601 R 1 
HETATM 15 C C3 R5F . . . F 6 123.896 132.358 120.736 1 82.79 ? C3 R5F 601 R 1 
HETATM 16 C C9 R5F . . . F 6 123.445 132.625 127.245 1 82.79 ? C9 R5F 601 R 1 
HETATM 17 C C11 R5F . . . F 6 127.577 132.025 121.665 1 82.79 ? C11 R5F 601 R 1 
HETATM 18 C C12 R5F . . . F 6 128.662 132.146 120.606 1 82.79 ? C12 R5F 601 R 1 
HETATM 19 C C14 R5F . . . F 6 127.499 130.217 119.442 1 82.79 ? C14 R5F 601 R 1 
HETATM 20 C C16 R5F . . . F 6 127.499 129.188 118.5 1 82.79 ? C16 R5F 601 R 1 
HETATM 21 C C18 R5F . . . F 6 129.725 129.814 117.799 1 82.79 ? C18 R5F 601 R 1 
HETATM 22 C C19 R5F . . . F 6 129.725 130.854 118.722 1 82.79 ? C19 R5F 601 R 1 
HETATM 23 H H2 R5F . . . F 6 125.519 134.063 122.279 1 82.79 ? H2 R5F 601 R 1 
HETATM 24 H H3 R5F . . . F 6 123.999 133.508 122.976 1 82.79 ? H3 R5F 601 R 1 
HETATM 25 H H4 R5F . . . F 6 126.146 131.893 124.059 1 82.79 ? H4 R5F 601 R 1 
HETATM 26 H H5 R5F . . . F 6 126.542 133.587 124.247 1 82.79 ? H5 R5F 601 R 1 
HETATM 27 H H6 R5F . . . F 6 125.48 134.944 126.039 1 82.79 ? H6 R5F 601 R 1 
HETATM 28 H H7 R5F . . . F 6 124.015 134.519 128.125 1 82.79 ? H7 R5F 601 R 1 
HETATM 29 H H8 R5F . . . F 6 126.223 132.545 120.131 1 82.79 ? H8 R5F 601 R 1 
HETATM 30 H H9 R5F . . . F 6 125.375 130.26 119.705 1 82.79 ? H9 R5F 601 R 1 
HETATM 31 H H10 R5F . . . F 6 126.263 129.658 121.093 1 82.79 ? H10 R5F 601 R 1 
HETATM 32 H H11 R5F . . . F 6 128.604 128.171 116.966 1 82.79 ? H11 R5F 601 R 1 
HETATM 33 H H12 R5F . . . F 6 121.421 131.929 119.326 1 82.79 ? H12 R5F 601 R 1 
HETATM 34 H H13 R5F . . . F 6 121.642 133.587 119.93 1 82.79 ? H13 R5F 601 R 1 
HETATM 35 H H14 R5F . . . F 6 120.437 132.525 120.671 1 82.79 ? H14 R5F 601 R 1 
HETATM 36 H H15 R5F . . . F 6 130.541 132.52 119.223 1 82.79 ? H15 R5F 601 R 1 
HETATM 37 H H16 R5F . . . F 6 122.319 132.491 122.211 1 82.79 ? H16 R5F 601 R 1 
HETATM 38 H H17 R5F . . . F 6 122.409 130.955 121.343 1 82.79 ? H17 R5F 601 R 1 
HETATM 39 H H18 R5F . . . F 6 123.971 133.411 120.461 1 82.79 ? H18 R5F 601 R 1 
HETATM 40 H H19 R5F . . . F 6 124.08 131.769 119.837 1 82.79 ? H19 R5F 601 R 1 
HETATM 41 H H20 R5F . . . F 6 122.81 132.238 128.037 1 82.79 ? H20 R5F 601 R 1 
HETATM 42 H H21 R5F . . . F 6 127.596 132.953 122.248 1 82.79 ? H21 R5F 601 R 1 
HETATM 43 H H22 R5F . . . F 6 127.786 131.191 122.346 1 82.79 ? H22 R5F 601 R 1 
HETATM 44 H H23 R5F . . . F 6 128.519 133.102 120.088 1 82.79 ? H23 R5F 601 R 1 
HETATM 45 H H24 R5F . . . F 6 129.638 132.187 121.103 1 82.79 ? H24 R5F 601 R 1 
HETATM 46 H H25 R5F . . . F 6 126.638 128.535 118.397 1 82.79 ? H25 R5F 601 R 1 
HETATM 47 H H26 R5F . . . F 6 130.583 129.67 117.15 1 82.79 ? H26 R5F 601 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           47 
#