data_8IRU # _model_server_result.job_id UOWvEU0iVRJ3hCWjC8M8Yg _model_server_result.datetime_utc '2024-10-20 20:25:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 8IRU # _exptl.entry_id 8IRU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 159 E CYS 159 1_555 C SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 E SG CYS 253 R CYS 108 1_555 E SG CYS 330 R CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 E SG CYS 565 R CYS 372 1_555 E SG CYS 568 R CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8IRU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 R5F R 1 601 501 R5F LIG . G 7 CLR R 1 602 1 CLR CLR . H 7 CLR R 1 603 2 CLR CLR . I 7 CLR R 1 604 3 CLR CLR . J 7 CLR R 1 605 4 CLR CLR . K 7 CLR R 1 606 5 CLR CLR . L 7 CLR R 1 607 6 CLR CLR . M 7 CLR R 1 608 7 CLR CLR . N 7 CLR R 1 609 8 CLR CLR . O 7 CLR R 1 610 9 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 7 113.352 140.195 125.322 1 20 ? C1 CLR 602 R 1 HETATM 2 C C2 CLR . . . G 7 114.325 141.144 126.043 1 20 ? C2 CLR 602 R 1 HETATM 3 C C3 CLR . . . G 7 115.311 141.726 125.028 1 20 ? C3 CLR 602 R 1 HETATM 4 C C4 CLR . . . G 7 114.539 142.567 123.997 1 20 ? C4 CLR 602 R 1 HETATM 5 C C5 CLR . . . G 7 113.571 141.687 123.214 1 20 ? C5 CLR 602 R 1 HETATM 6 C C6 CLR . . . G 7 113.56 141.71 121.873 1 20 ? C6 CLR 602 R 1 HETATM 7 C C7 CLR . . . G 7 112.694 140.837 120.983 1 20 ? C7 CLR 602 R 1 HETATM 8 C C8 CLR . . . G 7 111.651 139.981 121.753 1 20 ? C8 CLR 602 R 1 HETATM 9 C C9 CLR . . . G 7 112.223 139.543 123.139 1 20 ? C9 CLR 602 R 1 HETATM 10 C C10 CLR . . . G 7 112.644 140.77 124.04 1 20 ? C10 CLR 602 R 1 HETATM 11 C C11 CLR . . . G 7 111.321 138.488 123.862 1 20 ? C11 CLR 602 R 1 HETATM 12 C C12 CLR . . . G 7 110.913 137.301 122.95 1 20 ? C12 CLR 602 R 1 HETATM 13 C C13 CLR . . . G 7 110.244 137.78 121.637 1 20 ? C13 CLR 602 R 1 HETATM 14 C C14 CLR . . . G 7 111.27 138.706 120.945 1 20 ? C14 CLR 602 R 1 HETATM 15 C C15 CLR . . . G 7 110.75 138.864 119.51 1 20 ? C15 CLR 602 R 1 HETATM 16 C C16 CLR . . . G 7 110.085 137.498 119.204 1 20 ? C16 CLR 602 R 1 HETATM 17 C C17 CLR . . . G 7 110.065 136.682 120.536 1 20 ? C17 CLR 602 R 1 HETATM 18 C C18 CLR . . . G 7 108.885 138.512 121.921 1 20 ? C18 CLR 602 R 1 HETATM 19 C C19 CLR . . . G 7 111.421 141.624 124.482 1 20 ? C19 CLR 602 R 1 HETATM 20 C C20 CLR . . . G 7 108.852 135.679 120.622 1 20 ? C20 CLR 602 R 1 HETATM 21 C C21 CLR . . . G 7 108.723 135.011 122.014 1 20 ? C21 CLR 602 R 1 HETATM 22 C C22 CLR . . . G 7 108.99 134.606 119.493 1 20 ? C22 CLR 602 R 1 HETATM 23 C C23 CLR . . . G 7 107.934 133.467 119.526 1 20 ? C23 CLR 602 R 1 HETATM 24 C C24 CLR . . . G 7 107.974 132.549 118.28 1 20 ? C24 CLR 602 R 1 HETATM 25 C C25 CLR . . . G 7 107.488 133.199 116.955 1 20 ? C25 CLR 602 R 1 HETATM 26 C C26 CLR . . . G 7 106.023 133.695 117.046 1 20 ? C26 CLR 602 R 1 HETATM 27 C C27 CLR . . . G 7 107.65 132.203 115.783 1 20 ? C27 CLR 602 R 1 HETATM 28 O O1 CLR . . . G 7 116.309 142.49 125.686 1 20 ? O1 CLR 602 R 1 HETATM 29 H H11 CLR . . . G 7 113.923 139.304 125.035 1 20 ? H11 CLR 602 R 1 HETATM 30 H H12 CLR . . . G 7 112.601 139.852 126.043 1 20 ? H12 CLR 602 R 1 HETATM 31 H H21 CLR . . . G 7 113.771 141.946 126.544 1 20 ? H21 CLR 602 R 1 HETATM 32 H H22 CLR . . . G 7 114.871 140.587 126.813 1 20 ? H22 CLR 602 R 1 HETATM 33 H H3 CLR . . . G 7 115.797 140.901 124.494 1 20 ? H3 CLR 602 R 1 HETATM 34 H H41 CLR . . . G 7 115.253 143.056 123.323 1 20 ? H41 CLR 602 R 1 HETATM 35 H H42 CLR . . . G 7 113.991 143.364 124.514 1 20 ? H42 CLR 602 R 1 HETATM 36 H H6 CLR . . . G 7 114.232 142.369 121.329 1 20 ? H6 CLR 602 R 1 HETATM 37 H H71 CLR . . . G 7 113.355 140.189 120.398 1 20 ? H71 CLR 602 R 1 HETATM 38 H H72 CLR . . . G 7 112.173 141.462 120.249 1 20 ? H72 CLR 602 R 1 HETATM 39 H H8 CLR . . . G 7 110.759 140.602 121.9 1 20 ? H8 CLR 602 R 1 HETATM 40 H H9 CLR . . . G 7 113.153 139.009 122.909 1 20 ? H9 CLR 602 R 1 HETATM 41 H H111 CLR . . . G 7 110.417 138.965 124.258 1 20 ? H111 CLR 602 R 1 HETATM 42 H H112 CLR . . . G 7 111.849 138.067 124.726 1 20 ? H112 CLR 602 R 1 HETATM 43 H H121 CLR . . . G 7 110.252 136.632 123.512 1 20 ? H121 CLR 602 R 1 HETATM 44 H H122 CLR . . . G 7 111.806 136.71 122.714 1 20 ? H122 CLR 602 R 1 HETATM 45 H H14 CLR . . . G 7 112.201 138.134 120.844 1 20 ? H14 CLR 602 R 1 HETATM 46 H H151 CLR . . . G 7 111.565 139.076 118.808 1 20 ? H151 CLR 602 R 1 HETATM 47 H H152 CLR . . . G 7 110.017 139.676 119.448 1 20 ? H152 CLR 602 R 1 HETATM 48 H H161 CLR . . . G 7 110.649 136.96 118.434 1 20 ? H161 CLR 602 R 1 HETATM 49 H H162 CLR . . . G 7 109.07 137.658 118.822 1 20 ? H162 CLR 602 R 1 HETATM 50 H H17 CLR . . . G 7 110.976 136.072 120.551 1 20 ? H17 CLR 602 R 1 HETATM 51 H H181 CLR . . . G 7 108.198 137.881 122.494 1 20 ? H181 CLR 602 R 1 HETATM 52 H H182 CLR . . . G 7 108.372 138.79 120.995 1 20 ? H182 CLR 602 R 1 HETATM 53 H H183 CLR . . . G 7 109.014 139.431 122.504 1 20 ? H183 CLR 602 R 1 HETATM 54 H H191 CLR . . . G 7 111.738 142.452 125.125 1 20 ? H191 CLR 602 R 1 HETATM 55 H H192 CLR . . . G 7 110.695 141.035 125.052 1 20 ? H192 CLR 602 R 1 HETATM 56 H H193 CLR . . . G 7 110.901 142.064 123.625 1 20 ? H193 CLR 602 R 1 HETATM 57 H H20 CLR . . . G 7 107.924 136.233 120.438 1 20 ? H20 CLR 602 R 1 HETATM 58 H H211 CLR . . . G 7 109.676 134.566 122.316 1 20 ? H211 CLR 602 R 1 HETATM 59 H H212 CLR . . . G 7 107.954 134.233 122.037 1 20 ? H212 CLR 602 R 1 HETATM 60 H H213 CLR . . . G 7 108.416 135.732 122.779 1 20 ? H213 CLR 602 R 1 HETATM 61 H H221 CLR . . . G 7 109.988 134.153 119.539 1 20 ? H221 CLR 602 R 1 HETATM 62 H H222 CLR . . . G 7 108.928 135.117 118.525 1 20 ? H222 CLR 602 R 1 HETATM 63 H H231 CLR . . . G 7 106.931 133.885 119.669 1 20 ? H231 CLR 602 R 1 HETATM 64 H H232 CLR . . . G 7 108.129 132.824 120.392 1 20 ? H232 CLR 602 R 1 HETATM 65 H H241 CLR . . . G 7 107.358 131.665 118.482 1 20 ? H241 CLR 602 R 1 HETATM 66 H H242 CLR . . . G 7 108.999 132.185 118.149 1 20 ? H242 CLR 602 R 1 HETATM 67 H H25 CLR . . . G 7 108.122 134.064 116.728 1 20 ? H25 CLR 602 R 1 HETATM 68 H H261 CLR . . . G 7 105.359 132.898 117.395 1 20 ? H261 CLR 602 R 1 HETATM 69 H H262 CLR . . . G 7 105.667 134.03 116.066 1 20 ? H262 CLR 602 R 1 HETATM 70 H H263 CLR . . . G 7 105.936 134.544 117.732 1 20 ? H263 CLR 602 R 1 HETATM 71 H H271 CLR . . . G 7 107.353 132.664 114.835 1 20 ? H271 CLR 602 R 1 HETATM 72 H H272 CLR . . . G 7 107.036 131.31 115.937 1 20 ? H272 CLR 602 R 1 HETATM 73 H H273 CLR . . . G 7 108.693 131.888 115.681 1 20 ? H273 CLR 602 R 1 HETATM 74 H H1 CLR . . . G 7 117.113 141.957 125.571 1 20 ? H1 CLR 602 R 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 74 #