data_8IRU # _model_server_result.job_id 8Bj12Fa-vd9Tirlh2GI_CQ _model_server_result.datetime_utc '2024-10-20 20:26:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":604}' # _entry.id 8IRU # _exptl.entry_id 8IRU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 159 E CYS 159 1_555 C SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 E SG CYS 253 R CYS 108 1_555 E SG CYS 330 R CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 E SG CYS 565 R CYS 372 1_555 E SG CYS 568 R CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8IRU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 R5F R 1 601 501 R5F LIG . G 7 CLR R 1 602 1 CLR CLR . H 7 CLR R 1 603 2 CLR CLR . I 7 CLR R 1 604 3 CLR CLR . J 7 CLR R 1 605 4 CLR CLR . K 7 CLR R 1 606 5 CLR CLR . L 7 CLR R 1 607 6 CLR CLR . M 7 CLR R 1 608 7 CLR CLR . N 7 CLR R 1 609 8 CLR CLR . O 7 CLR R 1 610 9 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 7 130.666 150.42 115.677 1 20 ? C1 CLR 604 R 1 HETATM 2 C C2 CLR . . . I 7 131.571 151.212 116.649 1 20 ? C2 CLR 604 R 1 HETATM 3 C C3 CLR . . . I 7 130.836 152.434 117.229 1 20 ? C3 CLR 604 R 1 HETATM 4 C C4 CLR . . . I 7 129.519 152.018 117.91 1 20 ? C4 CLR 604 R 1 HETATM 5 C C5 CLR . . . I 7 128.628 151.177 117.001 1 20 ? C5 CLR 604 R 1 HETATM 6 C C6 CLR . . . I 7 127.333 151.487 116.853 1 20 ? C6 CLR 604 R 1 HETATM 7 C C7 CLR . . . I 7 126.341 150.696 116.034 1 20 ? C7 CLR 604 R 1 HETATM 8 C C8 CLR . . . I 7 126.884 149.303 115.634 1 20 ? C8 CLR 604 R 1 HETATM 9 C C9 CLR . . . I 7 128.364 149.43 115.15 1 20 ? C9 CLR 604 R 1 HETATM 10 C C10 CLR . . . I 7 129.301 149.974 116.305 1 20 ? C10 CLR 604 R 1 HETATM 11 C C11 CLR . . . I 7 128.897 148.138 114.422 1 20 ? C11 CLR 604 R 1 HETATM 12 C C12 CLR . . . I 7 127.899 147.503 113.408 1 20 ? C12 CLR 604 R 1 HETATM 13 C C13 CLR . . . I 7 126.5 147.276 114.047 1 20 ? C13 CLR 604 R 1 HETATM 14 C C14 CLR . . . I 7 126.019 148.669 114.519 1 20 ? C14 CLR 604 R 1 HETATM 15 C C15 CLR . . . I 7 124.518 148.533 114.787 1 20 ? C15 CLR 604 R 1 HETATM 16 C C16 CLR . . . I 7 124.055 147.449 113.798 1 20 ? C16 CLR 604 R 1 HETATM 17 C C17 CLR . . . I 7 125.326 146.89 113.08 1 20 ? C17 CLR 604 R 1 HETATM 18 C C18 CLR . . . I 7 126.61 146.233 115.209 1 20 ? C18 CLR 604 R 1 HETATM 19 C C19 CLR . . . I 7 129.556 148.877 117.381 1 20 ? C19 CLR 604 R 1 HETATM 20 C C20 CLR . . . I 7 125.151 145.385 112.653 1 20 ? C20 CLR 604 R 1 HETATM 21 C C21 CLR . . . I 7 126.391 144.861 111.899 1 20 ? C21 CLR 604 R 1 HETATM 22 C C22 CLR . . . I 7 123.886 145.197 111.754 1 20 ? C22 CLR 604 R 1 HETATM 23 C C23 CLR . . . I 7 122.69 144.519 112.474 1 20 ? C23 CLR 604 R 1 HETATM 24 C C24 CLR . . . I 7 121.347 144.717 111.719 1 20 ? C24 CLR 604 R 1 HETATM 25 C C25 CLR . . . I 7 120.914 143.531 110.808 1 20 ? C25 CLR 604 R 1 HETATM 26 C C26 CLR . . . I 7 121.974 143.138 109.753 1 20 ? C26 CLR 604 R 1 HETATM 27 C C27 CLR . . . I 7 119.572 143.853 110.111 1 20 ? C27 CLR 604 R 1 HETATM 28 O O1 CLR . . . I 7 131.674 153.082 118.184 1 20 ? O1 CLR 604 R 1 HETATM 29 H H11 CLR . . . I 7 130.477 151.047 114.799 1 20 ? H11 CLR 604 R 1 HETATM 30 H H12 CLR . . . I 7 131.223 149.546 115.319 1 20 ? H12 CLR 604 R 1 HETATM 31 H H21 CLR . . . I 7 131.905 150.556 117.462 1 20 ? H21 CLR 604 R 1 HETATM 32 H H22 CLR . . . I 7 132.47 151.543 116.116 1 20 ? H22 CLR 604 R 1 HETATM 33 H H3 CLR . . . I 7 130.6 153.122 116.409 1 20 ? H3 CLR 604 R 1 HETATM 34 H H41 CLR . . . I 7 128.992 152.923 118.235 1 20 ? H41 CLR 604 R 1 HETATM 35 H H42 CLR . . . I 7 129.752 151.453 118.82 1 20 ? H42 CLR 604 R 1 HETATM 36 H H6 CLR . . . I 7 126.909 152.346 117.367 1 20 ? H6 CLR 604 R 1 HETATM 37 H H71 CLR . . . I 7 126.072 151.274 115.142 1 20 ? H71 CLR 604 R 1 HETATM 38 H H72 CLR . . . I 7 125.413 150.576 116.605 1 20 ? H72 CLR 604 R 1 HETATM 39 H H8 CLR . . . I 7 126.828 148.667 116.525 1 20 ? H8 CLR 604 R 1 HETATM 40 H H9 CLR . . . I 7 128.35 150.205 114.374 1 20 ? H9 CLR 604 R 1 HETATM 41 H H111 CLR . . . I 7 129.175 147.366 115.15 1 20 ? H111 CLR 604 R 1 HETATM 42 H H112 CLR . . . I 7 129.819 148.384 113.882 1 20 ? H112 CLR 604 R 1 HETATM 43 H H121 CLR . . . I 7 128.325 146.56 113.046 1 20 ? H121 CLR 604 R 1 HETATM 44 H H122 CLR . . . I 7 127.81 148.159 112.534 1 20 ? H122 CLR 604 R 1 HETATM 45 H H14 CLR . . . I 7 126.097 149.341 113.657 1 20 ? H14 CLR 604 R 1 HETATM 46 H H151 CLR . . . I 7 123.993 149.48 114.613 1 20 ? H151 CLR 604 R 1 HETATM 47 H H152 CLR . . . I 7 124.331 148.219 115.82 1 20 ? H152 CLR 604 R 1 HETATM 48 H H161 CLR . . . I 7 123.342 147.861 113.074 1 20 ? H161 CLR 604 R 1 HETATM 49 H H162 CLR . . . I 7 123.545 146.663 114.369 1 20 ? H162 CLR 604 R 1 HETATM 50 H H17 CLR . . . I 7 125.46 147.476 112.163 1 20 ? H17 CLR 604 R 1 HETATM 51 H H181 CLR . . . I 7 127.038 145.292 114.847 1 20 ? H181 CLR 604 R 1 HETATM 52 H H182 CLR . . . I 7 125.627 146.005 115.634 1 20 ? H182 CLR 604 R 1 HETATM 53 H H183 CLR . . . I 7 127.25 146.568 116.032 1 20 ? H183 CLR 604 R 1 HETATM 54 H H191 CLR . . . I 7 130.103 149.276 118.243 1 20 ? H191 CLR 604 R 1 HETATM 55 H H192 CLR . . . I 7 130.15 148.045 116.985 1 20 ? H192 CLR 604 R 1 HETATM 56 H H193 CLR . . . I 7 128.616 148.47 117.768 1 20 ? H193 CLR 604 R 1 HETATM 57 H H20 CLR . . . I 7 125.025 144.764 113.547 1 20 ? H20 CLR 604 R 1 HETATM 58 H H211 CLR . . . I 7 126.686 145.553 111.102 1 20 ? H211 CLR 604 R 1 HETATM 59 H H212 CLR . . . I 7 126.183 143.885 111.445 1 20 ? H212 CLR 604 R 1 HETATM 60 H H213 CLR . . . I 7 127.241 144.719 112.575 1 20 ? H213 CLR 604 R 1 HETATM 61 H H221 CLR . . . I 7 124.133 144.6 110.868 1 20 ? H221 CLR 604 R 1 HETATM 62 H H222 CLR . . . I 7 123.576 146.17 111.355 1 20 ? H222 CLR 604 R 1 HETATM 63 H H231 CLR . . . I 7 122.574 144.941 113.479 1 20 ? H231 CLR 604 R 1 HETATM 64 H H232 CLR . . . I 7 122.897 143.452 112.618 1 20 ? H232 CLR 604 R 1 HETATM 65 H H241 CLR . . . I 7 121.373 145.644 111.134 1 20 ? H241 CLR 604 R 1 HETATM 66 H H242 CLR . . . I 7 120.562 144.867 112.469 1 20 ? H242 CLR 604 R 1 HETATM 67 H H25 CLR . . . I 7 120.747 142.663 111.455 1 20 ? H25 CLR 604 R 1 HETATM 68 H H261 CLR . . . I 7 122.878 142.743 110.231 1 20 ? H261 CLR 604 R 1 HETATM 69 H H262 CLR . . . I 7 122.252 144 109.138 1 20 ? H262 CLR 604 R 1 HETATM 70 H H263 CLR . . . I 7 121.591 142.356 109.088 1 20 ? H263 CLR 604 R 1 HETATM 71 H H271 CLR . . . I 7 118.794 144.076 110.849 1 20 ? H271 CLR 604 R 1 HETATM 72 H H272 CLR . . . I 7 119.23 143.002 109.511 1 20 ? H272 CLR 604 R 1 HETATM 73 H H273 CLR . . . I 7 119.673 144.718 109.448 1 20 ? H273 CLR 604 R 1 HETATM 74 H H1 CLR . . . I 7 132.19 153.727 117.708 1 20 ? H1 CLR 604 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 74 #