data_8IRU
#
_model_server_result.job_id            7wtcg8McN8RLn72DNWtUhw 
_model_server_result.datetime_utc      '2024-10-20 20:27:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8iru 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":608}' 
#
_entry.id    8IRU 
#
_exptl.entry_id    8IRU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              386.654 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CHOLESTEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 159 E CYS 159 1_555 C SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 E SG CYS 253 R CYS 108 1_555 E SG CYS 330 R CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 E SG CYS 565 R CYS 372 1_555 E SG CYS 568 R CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C27 H46 O' 
_chem_comp.formula_weight    386.654 
_chem_comp.id                CLR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CHOLESTEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CLR sing 70 n n 
C1 C10 CLR sing 71 n n 
C1 H11 CLR sing 72 n n 
C1 H12 CLR sing 73 n n 
C2 C3 CLR sing 74 n n 
C2 H21 CLR sing 75 n n 
C2 H22 CLR sing 76 n n 
C3 C4 CLR sing 77 n n 
C3 O1 CLR sing 78 n n 
C3 H3 CLR sing 79 n n 
C4 C5 CLR sing 80 n n 
C4 H41 CLR sing 81 n n 
C4 H42 CLR sing 82 n n 
C5 C6 CLR doub 83 n n 
C5 C10 CLR sing 84 n n 
C6 C7 CLR sing 85 n n 
C6 H6 CLR sing 86 n n 
C7 C8 CLR sing 87 n n 
C7 H71 CLR sing 88 n n 
C7 H72 CLR sing 89 n n 
C8 C9 CLR sing 90 n n 
C8 C14 CLR sing 91 n n 
C8 H8 CLR sing 92 n n 
C9 C10 CLR sing 93 n n 
C9 C11 CLR sing 94 n n 
C9 H9 CLR sing 95 n n 
C10 C19 CLR sing 96 n n 
C11 C12 CLR sing 97 n n 
C11 H111 CLR sing 98 n n 
C11 H112 CLR sing 99 n n 
C12 C13 CLR sing 100 n n 
C12 H121 CLR sing 101 n n 
C12 H122 CLR sing 102 n n 
C13 C14 CLR sing 103 n n 
C13 C17 CLR sing 104 n n 
C13 C18 CLR sing 105 n n 
C14 C15 CLR sing 106 n n 
C14 H14 CLR sing 107 n n 
C15 C16 CLR sing 108 n n 
C15 H151 CLR sing 109 n n 
C15 H152 CLR sing 110 n n 
C16 C17 CLR sing 111 n n 
C16 H161 CLR sing 112 n n 
C16 H162 CLR sing 113 n n 
C17 C20 CLR sing 114 n n 
C17 H17 CLR sing 115 n n 
C18 H181 CLR sing 116 n n 
C18 H182 CLR sing 117 n n 
C18 H183 CLR sing 118 n n 
C19 H191 CLR sing 119 n n 
C19 H192 CLR sing 120 n n 
C19 H193 CLR sing 121 n n 
C20 C21 CLR sing 122 n n 
C20 C22 CLR sing 123 n n 
C20 H20 CLR sing 124 n n 
C21 H211 CLR sing 125 n n 
C21 H212 CLR sing 126 n n 
C21 H213 CLR sing 127 n n 
C22 C23 CLR sing 128 n n 
C22 H221 CLR sing 129 n n 
C22 H222 CLR sing 130 n n 
C23 C24 CLR sing 131 n n 
C23 H231 CLR sing 132 n n 
C23 H232 CLR sing 133 n n 
C24 C25 CLR sing 134 n n 
C24 H241 CLR sing 135 n n 
C24 H242 CLR sing 136 n n 
C25 C26 CLR sing 137 n n 
C25 C27 CLR sing 138 n n 
C25 H25 CLR sing 139 n n 
C26 H261 CLR sing 140 n n 
C26 H262 CLR sing 141 n n 
C26 H263 CLR sing 142 n n 
C27 H271 CLR sing 143 n n 
C27 H272 CLR sing 144 n n 
C27 H273 CLR sing 145 n n 
O1 H1 CLR sing 146 n n 
#
_atom_sites.entry_id                     8IRU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 R5F R 1 601 501 R5F LIG . 
G 7 CLR R 1 602 1 CLR CLR . 
H 7 CLR R 1 603 2 CLR CLR . 
I 7 CLR R 1 604 3 CLR CLR . 
J 7 CLR R 1 605 4 CLR CLR . 
K 7 CLR R 1 606 5 CLR CLR . 
L 7 CLR R 1 607 6 CLR CLR . 
M 7 CLR R 1 608 7 CLR CLR . 
N 7 CLR R 1 609 8 CLR CLR . 
O 7 CLR R 1 610 9 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CLR . . . M 7 126.994 121.04 138.718 1 20 ? C1 CLR 608 R 1 
HETATM 2 C C2 CLR . . . M 7 127.951 121.666 139.753 1 20 ? C2 CLR 608 R 1 
HETATM 3 C C3 CLR . . . M 7 129.338 121.003 139.681 1 20 ? C3 CLR 608 R 1 
HETATM 4 C C4 CLR . . . M 7 129.934 121.127 138.267 1 20 ? C4 CLR 608 R 1 
HETATM 5 C C5 CLR . . . M 7 129 120.577 137.191 1 20 ? C5 CLR 608 R 1 
HETATM 6 C C6 CLR . . . M 7 129.469 119.74 136.255 1 20 ? C6 CLR 608 R 1 
HETATM 7 C C7 CLR . . . M 7 128.655 119.155 135.122 1 20 ? C7 CLR 608 R 1 
HETATM 8 C C8 CLR . . . M 7 127.257 119.806 134.974 1 20 ? C8 CLR 608 R 1 
HETATM 9 C C9 CLR . . . M 7 126.632 120.091 136.377 1 20 ? C9 CLR 608 R 1 
HETATM 10 C C10 CLR . . . M 7 127.534 121.057 137.243 1 20 ? C10 CLR 608 R 1 
HETATM 11 C C11 CLR . . . M 7 125.123 120.517 136.3 1 20 ? C11 CLR 608 R 1 
HETATM 12 C C12 CLR . . . M 7 124.253 119.632 135.367 1 20 ? C12 CLR 608 R 1 
HETATM 13 C C13 CLR . . . M 7 124.883 119.478 133.95 1 20 ? C13 CLR 608 R 1 
HETATM 14 C C14 CLR . . . M 7 126.302 118.897 134.164 1 20 ? C14 CLR 608 R 1 
HETATM 15 C C15 CLR . . . M 7 126.758 118.433 132.781 1 20 ? C15 CLR 608 R 1 
HETATM 16 C C16 CLR . . . M 7 125.455 117.948 132.118 1 20 ? C16 CLR 608 R 1 
HETATM 17 C C17 CLR . . . M 7 124.258 118.361 133.037 1 20 ? C17 CLR 608 R 1 
HETATM 18 C C18 CLR . . . M 7 124.912 120.855 133.199 1 20 ? C18 CLR 608 R 1 
HETATM 19 C C19 CLR . . . M 7 127.504 122.514 136.7 1 20 ? C19 CLR 608 R 1 
HETATM 20 C C20 CLR . . . M 7 122.925 118.673 132.248 1 20 ? C20 CLR 608 R 1 
HETATM 21 C C21 CLR . . . M 7 121.812 119.275 133.152 1 20 ? C21 CLR 608 R 1 
HETATM 22 C C22 CLR . . . M 7 122.321 117.402 131.548 1 20 ? C22 CLR 608 R 1 
HETATM 23 C C23 CLR . . . M 7 123.084 116.881 130.305 1 20 ? C23 CLR 608 R 1 
HETATM 24 C C24 CLR . . . M 7 122.2 115.994 129.397 1 20 ? C24 CLR 608 R 1 
HETATM 25 C C25 CLR . . . M 7 122.998 115.241 128.297 1 20 ? C25 CLR 608 R 1 
HETATM 26 C C26 CLR . . . M 7 123.773 116.194 127.354 1 20 ? C26 CLR 608 R 1 
HETATM 27 C C27 CLR . . . M 7 122.054 114.332 127.484 1 20 ? C27 CLR 608 R 1 
HETATM 28 O O1 CLR . . . M 7 130.207 121.624 140.62 1 20 ? O1 CLR 608 R 1 
HETATM 29 H H11 CLR . . . M 7 126.795 120.005 139.022 1 20 ? H11 CLR 608 R 1 
HETATM 30 H H12 CLR . . . M 7 126.033 121.567 138.779 1 20 ? H12 CLR 608 R 1 
HETATM 31 H H21 CLR . . . M 7 128.037 122.745 139.578 1 20 ? H21 CLR 608 R 1 
HETATM 32 H H22 CLR . . . M 7 127.53 121.536 140.757 1 20 ? H22 CLR 608 R 1 
HETATM 33 H H3 CLR . . . M 7 129.23 119.937 139.919 1 20 ? H3 CLR 608 R 1 
HETATM 34 H H41 CLR . . . M 7 130.899 120.607 138.241 1 20 ? H41 CLR 608 R 1 
HETATM 35 H H42 CLR . . . M 7 130.143 122.185 138.064 1 20 ? H42 CLR 608 R 1 
HETATM 36 H H6 CLR . . . M 7 130.514 119.437 136.261 1 20 ? H6 CLR 608 R 1 
HETATM 37 H H71 CLR . . . M 7 128.557 118.074 135.285 1 20 ? H71 CLR 608 R 1 
HETATM 38 H H72 CLR . . . M 7 129.206 119.264 134.18 1 20 ? H72 CLR 608 R 1 
HETATM 39 H H8 CLR . . . M 7 127.399 120.752 134.436 1 20 ? H8 CLR 608 R 1 
HETATM 40 H H9 CLR . . . M 7 126.63 119.124 136.894 1 20 ? H9 CLR 608 R 1 
HETATM 41 H H111 CLR . . . M 7 125.034 121.557 135.961 1 20 ? H111 CLR 608 R 1 
HETATM 42 H H112 CLR . . . M 7 124.678 120.485 137.302 1 20 ? H112 CLR 608 R 1 
HETATM 43 H H121 CLR . . . M 7 123.252 120.077 135.308 1 20 ? H121 CLR 608 R 1 
HETATM 44 H H122 CLR . . . M 7 124.125 118.644 135.827 1 20 ? H122 CLR 608 R 1 
HETATM 45 H H14 CLR . . . M 7 126.19 117.981 134.757 1 20 ? H14 CLR 608 R 1 
HETATM 46 H H151 CLR . . . M 7 127.498 117.626 132.85 1 20 ? H151 CLR 608 R 1 
HETATM 47 H H152 CLR . . . M 7 127.2 119.26 132.212 1 20 ? H152 CLR 608 R 1 
HETATM 48 H H161 CLR . . . M 7 125.495 116.857 132.011 1 20 ? H161 CLR 608 R 1 
HETATM 49 H H162 CLR . . . M 7 125.367 118.393 131.119 1 20 ? H162 CLR 608 R 1 
HETATM 50 H H17 CLR . . . M 7 124.042 117.504 133.686 1 20 ? H17 CLR 608 R 1 
HETATM 51 H H181 CLR . . . M 7 123.912 121.299 133.119 1 20 ? H181 CLR 608 R 1 
HETATM 52 H H182 CLR . . . M 7 125.3 120.757 132.178 1 20 ? H182 CLR 608 R 1 
HETATM 53 H H183 CLR . . . M 7 125.531 121.603 133.71 1 20 ? H183 CLR 608 R 1 
HETATM 54 H H191 CLR . . . M 7 128.201 123.167 137.24 1 20 ? H191 CLR 608 R 1 
HETATM 55 H H192 CLR . . . M 7 126.51 122.965 136.807 1 20 ? H192 CLR 608 R 1 
HETATM 56 H H193 CLR . . . M 7 127.785 122.564 135.641 1 20 ? H193 CLR 608 R 1 
HETATM 57 H H20 CLR . . . M 7 123.144 119.414 131.469 1 20 ? H20 CLR 608 R 1 
HETATM 58 H H211 CLR . . . M 7 121.65 118.658 134.044 1 20 ? H211 CLR 608 R 1 
HETATM 59 H H212 CLR . . . M 7 120.86 119.337 132.611 1 20 ? H212 CLR 608 R 1 
HETATM 60 H H213 CLR . . . M 7 122.04 120.3 133.471 1 20 ? H213 CLR 608 R 1 
HETATM 61 H H221 CLR . . . M 7 121.298 117.635 131.227 1 20 ? H221 CLR 608 R 1 
HETATM 62 H H222 CLR . . . M 7 122.225 116.59 132.28 1 20 ? H222 CLR 608 R 1 
HETATM 63 H H231 CLR . . . M 7 123.949 116.285 130.619 1 20 ? H231 CLR 608 R 1 
HETATM 64 H H232 CLR . . . M 7 123.457 117.733 129.723 1 20 ? H232 CLR 608 R 1 
HETATM 65 H H241 CLR . . . M 7 121.424 116.613 128.929 1 20 ? H241 CLR 608 R 1 
HETATM 66 H H242 CLR . . . M 7 121.679 115.257 130.02 1 20 ? H242 CLR 608 R 1 
HETATM 67 H H25 CLR . . . M 7 123.732 114.594 128.792 1 20 ? H25 CLR 608 R 1 
HETATM 68 H H261 CLR . . . M 7 124.251 115.63 126.543 1 20 ? H261 CLR 608 R 1 
HETATM 69 H H262 CLR . . . M 7 124.57 116.721 127.891 1 20 ? H262 CLR 608 R 1 
HETATM 70 H H263 CLR . . . M 7 123.107 116.94 126.903 1 20 ? H263 CLR 608 R 1 
HETATM 71 H H271 CLR . . . M 7 122.605 113.788 126.707 1 20 ? H271 CLR 608 R 1 
HETATM 72 H H272 CLR . . . M 7 121.269 114.919 126.993 1 20 ? H272 CLR 608 R 1 
HETATM 73 H H273 CLR . . . M 7 121.571 113.588 128.13 1 20 ? H273 CLR 608 R 1 
HETATM 74 H H1 CLR . . . M 7 129.838 121.441 141.502 1 20 ? H1 CLR 608 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           74 
#