data_8IRU # _model_server_result.job_id xYI10WOG1Evi8Em0IcB9aA _model_server_result.datetime_utc '2024-10-20 20:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":609}' # _entry.id 8IRU # _exptl.entry_id 8IRU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 159 E CYS 159 1_555 C SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 E SG CYS 253 R CYS 108 1_555 E SG CYS 330 R CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 E SG CYS 565 R CYS 372 1_555 E SG CYS 568 R CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8IRU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 R5F R 1 601 501 R5F LIG . G 7 CLR R 1 602 1 CLR CLR . H 7 CLR R 1 603 2 CLR CLR . I 7 CLR R 1 604 3 CLR CLR . J 7 CLR R 1 605 4 CLR CLR . K 7 CLR R 1 606 5 CLR CLR . L 7 CLR R 1 607 6 CLR CLR . M 7 CLR R 1 608 7 CLR CLR . N 7 CLR R 1 609 8 CLR CLR . O 7 CLR R 1 610 9 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . N 7 120.806 125.512 142.631 1 20 ? C1 CLR 609 R 1 HETATM 2 C C2 CLR . . . N 7 121.539 126.284 143.753 1 20 ? C2 CLR 609 R 1 HETATM 3 C C3 CLR . . . N 7 122.762 125.498 144.257 1 20 ? C3 CLR 609 R 1 HETATM 4 C C4 CLR . . . N 7 123.72 125.181 143.093 1 20 ? C4 CLR 609 R 1 HETATM 5 C C5 CLR . . . N 7 123.019 124.455 141.946 1 20 ? C5 CLR 609 R 1 HETATM 6 C C6 CLR . . . N 7 123.533 123.324 141.441 1 20 ? C6 CLR 609 R 1 HETATM 7 C C7 CLR . . . N 7 122.955 122.549 140.277 1 20 ? C7 CLR 609 R 1 HETATM 8 C C8 CLR . . . N 7 121.892 123.363 139.505 1 20 ? C8 CLR 609 R 1 HETATM 9 C C9 CLR . . . N 7 120.932 124.075 140.517 1 20 ? C9 CLR 609 R 1 HETATM 10 C C10 CLR . . . N 7 121.719 125.108 141.424 1 20 ? C10 CLR 609 R 1 HETATM 11 C C11 CLR . . . N 7 119.623 124.652 139.854 1 20 ? C11 CLR 609 R 1 HETATM 12 C C12 CLR . . . N 7 118.959 123.712 138.809 1 20 ? C12 CLR 609 R 1 HETATM 13 C C13 CLR . . . N 7 119.985 123.203 137.755 1 20 ? C13 CLR 609 R 1 HETATM 14 C C14 CLR . . . N 7 121.087 122.459 138.542 1 20 ? C14 CLR 609 R 1 HETATM 15 C C15 CLR . . . N 7 121.87 121.665 137.49 1 20 ? C15 CLR 609 R 1 HETATM 16 C C16 CLR . . . N 7 120.811 121.304 136.427 1 20 ? C16 CLR 609 R 1 HETATM 17 C C17 CLR . . . N 7 119.492 122.055 136.807 1 20 ? C17 CLR 609 R 1 HETATM 18 C C18 CLR . . . N 7 120.555 124.399 136.917 1 20 ? C18 CLR 609 R 1 HETATM 19 C C19 CLR . . . N 7 122.106 126.389 140.625 1 20 ? C19 CLR 609 R 1 HETATM 20 C C20 CLR . . . N 7 118.647 122.442 135.539 1 20 ? C20 CLR 609 R 1 HETATM 21 C C21 CLR . . . N 7 117.376 123.268 135.865 1 20 ? C21 CLR 609 R 1 HETATM 22 C C22 CLR . . . N 7 118.236 121.175 134.726 1 20 ? C22 CLR 609 R 1 HETATM 23 C C23 CLR . . . N 7 118.321 121.408 133.204 1 20 ? C23 CLR 609 R 1 HETATM 24 C C24 CLR . . . N 7 117.823 120.213 132.358 1 20 ? C24 CLR 609 R 1 HETATM 25 C C25 CLR . . . N 7 116.31 119.878 132.493 1 20 ? C25 CLR 609 R 1 HETATM 26 C C26 CLR . . . N 7 115.94 118.722 131.538 1 20 ? C26 CLR 609 R 1 HETATM 27 C C27 CLR . . . N 7 115.395 121.099 132.236 1 20 ? C27 CLR 609 R 1 HETATM 28 O O1 CLR . . . N 7 123.441 126.253 145.257 1 20 ? O1 CLR 609 R 1 HETATM 29 H H11 CLR . . . N 7 120.367 124.609 143.072 1 20 ? H11 CLR 609 R 1 HETATM 30 H H12 CLR . . . N 7 119.964 126.122 142.279 1 20 ? H12 CLR 609 R 1 HETATM 31 H H21 CLR . . . N 7 121.848 127.271 143.386 1 20 ? H21 CLR 609 R 1 HETATM 32 H H22 CLR . . . N 7 120.843 126.456 144.583 1 20 ? H22 CLR 609 R 1 HETATM 33 H H3 CLR . . . N 7 122.413 124.551 144.685 1 20 ? H3 CLR 609 R 1 HETATM 34 H H41 CLR . . . N 7 124.553 124.579 143.476 1 20 ? H41 CLR 609 R 1 HETATM 35 H H42 CLR . . . N 7 124.157 126.118 142.728 1 20 ? H42 CLR 609 R 1 HETATM 36 H H6 CLR . . . N 7 124.453 122.906 141.845 1 20 ? H6 CLR 609 R 1 HETATM 37 H H71 CLR . . . N 7 122.526 121.611 140.649 1 20 ? H71 CLR 609 R 1 HETATM 38 H H72 CLR . . . N 7 123.762 122.263 139.59 1 20 ? H72 CLR 609 R 1 HETATM 39 H H8 CLR . . . N 7 122.432 124.114 138.915 1 20 ? H8 CLR 609 R 1 HETATM 40 H H9 CLR . . . N 7 120.581 123.279 141.186 1 20 ? H9 CLR 609 R 1 HETATM 41 H H111 CLR . . . N 7 119.825 125.611 139.363 1 20 ? H111 CLR 609 R 1 HETATM 42 H H112 CLR . . . N 7 118.884 124.867 140.635 1 20 ? H112 CLR 609 R 1 HETATM 43 H H121 CLR . . . N 7 118.136 124.253 138.326 1 20 ? H121 CLR 609 R 1 HETATM 44 H H122 CLR . . . N 7 118.504 122.86 139.329 1 20 ? H122 CLR 609 R 1 HETATM 45 H H14 CLR . . . N 7 120.593 121.708 139.171 1 20 ? H14 CLR 609 R 1 HETATM 46 H H151 CLR . . . N 7 122.324 120.766 137.924 1 20 ? H151 CLR 609 R 1 HETATM 47 H H152 CLR . . . N 7 122.666 122.279 137.049 1 20 ? H152 CLR 609 R 1 HETATM 48 H H161 CLR . . . N 7 120.652 120.219 136.41 1 20 ? H161 CLR 609 R 1 HETATM 49 H H162 CLR . . . N 7 121.168 121.605 135.435 1 20 ? H162 CLR 609 R 1 HETATM 50 H H17 CLR . . . N 7 118.882 121.368 137.407 1 20 ? H17 CLR 609 R 1 HETATM 51 H H181 CLR . . . N 7 119.751 124.934 136.398 1 20 ? H181 CLR 609 R 1 HETATM 52 H H182 CLR . . . N 7 121.271 124.065 136.156 1 20 ? H182 CLR 609 R 1 HETATM 53 H H183 CLR . . . N 7 121.067 125.147 137.536 1 20 ? H183 CLR 609 R 1 HETATM 54 H H191 CLR . . . N 7 122.724 127.072 141.221 1 20 ? H191 CLR 609 R 1 HETATM 55 H H192 CLR . . . N 7 121.22 126.96 140.32 1 20 ? H192 CLR 609 R 1 HETATM 56 H H193 CLR . . . N 7 122.681 126.152 139.722 1 20 ? H193 CLR 609 R 1 HETATM 57 H H20 CLR . . . N 7 119.282 123.061 134.894 1 20 ? H20 CLR 609 R 1 HETATM 58 H H211 CLR . . . N 7 116.808 122.81 136.685 1 20 ? H211 CLR 609 R 1 HETATM 59 H H212 CLR . . . N 7 116.715 123.331 134.992 1 20 ? H212 CLR 609 R 1 HETATM 60 H H213 CLR . . . N 7 117.621 124.3 136.146 1 20 ? H213 CLR 609 R 1 HETATM 61 H H221 CLR . . . N 7 117.219 120.874 135.008 1 20 ? H221 CLR 609 R 1 HETATM 62 H H222 CLR . . . N 7 118.868 120.313 134.97 1 20 ? H222 CLR 609 R 1 HETATM 63 H H231 CLR . . . N 7 119.368 121.604 132.942 1 20 ? H231 CLR 609 R 1 HETATM 64 H H232 CLR . . . N 7 117.771 122.317 132.931 1 20 ? H232 CLR 609 R 1 HETATM 65 H H241 CLR . . . N 7 118.413 119.324 132.615 1 20 ? H241 CLR 609 R 1 HETATM 66 H H242 CLR . . . N 7 118.044 120.428 131.306 1 20 ? H242 CLR 609 R 1 HETATM 67 H H25 CLR . . . N 7 116.122 119.523 133.514 1 20 ? H25 CLR 609 R 1 HETATM 68 H H261 CLR . . . N 7 114.896 118.417 131.677 1 20 ? H261 CLR 609 R 1 HETATM 69 H H262 CLR . . . N 7 116.572 117.845 131.725 1 20 ? H262 CLR 609 R 1 HETATM 70 H H263 CLR . . . N 7 116.071 119.017 130.49 1 20 ? H263 CLR 609 R 1 HETATM 71 H H271 CLR . . . N 7 115.631 121.575 131.276 1 20 ? H271 CLR 609 R 1 HETATM 72 H H272 CLR . . . N 7 115.501 121.85 133.028 1 20 ? H272 CLR 609 R 1 HETATM 73 H H273 CLR . . . N 7 114.34 120.802 132.213 1 20 ? H273 CLR 609 R 1 HETATM 74 H H1 CLR . . . N 7 122.791 126.43 145.959 1 20 ? H1 CLR 609 R 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 74 #