data_8IRV # _model_server_result.job_id LYichaa6tUOocbWLjLDcpw _model_server_result.datetime_utc '2024-10-11 00:31:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8irv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":506}' # _entry.id 8IRV # _exptl.entry_id 8IRV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IRV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 253 R CYS 113 1_555 D SG CYS 357 R CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 D SG CYS 462 R CYS 322 1_555 D SG CYS 475 R CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8IRV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 R5F R 1 501 1 R5F LIG . F 6 CLR R 1 502 1 CLR CLR . G 6 CLR R 1 503 2 CLR CLR . H 6 CLR R 1 504 3 CLR CLR . I 6 CLR R 1 505 4 CLR CLR . J 6 CLR R 1 506 5 CLR CLR . K 6 CLR R 1 507 6 CLR CLR . L 6 CLR R 1 508 7 CLR CLR . M 6 CLR R 1 509 8 CLR CLR . N 6 CLR R 1 510 9 CLR CLR . O 6 CLR R 1 511 10 CLR CLR . P 7 PLM R 1 512 11 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . J 6 114.121 113.76 74.116 1 20 ? C1 CLR 506 R 1 HETATM 2 C C2 CLR . . . J 6 113.486 113.63 72.714 1 20 ? C2 CLR 506 R 1 HETATM 3 C C3 CLR . . . J 6 114.56 113.708 71.619 1 20 ? C3 CLR 506 R 1 HETATM 4 C C4 CLR . . . J 6 115.613 112.609 71.836 1 20 ? C4 CLR 506 R 1 HETATM 5 C C5 CLR . . . J 6 116.257 112.687 73.215 1 20 ? C5 CLR 506 R 1 HETATM 6 C C6 CLR . . . J 6 117.589 112.648 73.355 1 20 ? C6 CLR 506 R 1 HETATM 7 C C7 CLR . . . J 6 118.335 112.608 74.675 1 20 ? C7 CLR 506 R 1 HETATM 8 C C8 CLR . . . J 6 117.408 112.477 75.91 1 20 ? C8 CLR 506 R 1 HETATM 9 C C9 CLR . . . J 6 116.099 113.29 75.664 1 20 ? C9 CLR 506 R 1 HETATM 10 C C10 CLR . . . J 6 115.296 112.762 74.409 1 20 ? C10 CLR 506 R 1 HETATM 11 C C11 CLR . . . J 6 115.246 113.471 76.957 1 20 ? C11 CLR 506 R 1 HETATM 12 C C12 CLR . . . J 6 116.067 113.927 78.192 1 20 ? C12 CLR 506 R 1 HETATM 13 C C13 CLR . . . J 6 117.247 112.968 78.473 1 20 ? C13 CLR 506 R 1 HETATM 14 C C14 CLR . . . J 6 118.117 112.986 77.198 1 20 ? C14 CLR 506 R 1 HETATM 15 C C15 CLR . . . J 6 119.437 112.331 77.616 1 20 ? C15 CLR 506 R 1 HETATM 16 C C16 CLR . . . J 6 119.598 112.717 79.109 1 20 ? C16 CLR 506 R 1 HETATM 17 C C17 CLR . . . J 6 118.289 113.449 79.543 1 20 ? C17 CLR 506 R 1 HETATM 18 C C18 CLR . . . J 6 116.725 111.537 78.831 1 20 ? C18 CLR 506 R 1 HETATM 19 C C19 CLR . . . J 6 114.732 111.33 74.619 1 20 ? C19 CLR 506 R 1 HETATM 20 C C20 CLR . . . J 6 117.934 113.245 81.061 1 20 ? C20 CLR 506 R 1 HETATM 21 C C21 CLR . . . J 6 116.624 113.978 81.457 1 20 ? C21 CLR 506 R 1 HETATM 22 C C22 CLR . . . J 6 119.078 113.705 82.02 1 20 ? C22 CLR 506 R 1 HETATM 23 C C23 CLR . . . J 6 119.093 112.903 83.349 1 20 ? C23 CLR 506 R 1 HETATM 24 C C24 CLR . . . J 6 119.936 113.588 84.452 1 20 ? C24 CLR 506 R 1 HETATM 25 C C25 CLR . . . J 6 120.284 112.657 85.646 1 20 ? C25 CLR 506 R 1 HETATM 26 C C26 CLR . . . J 6 119.042 112.147 86.403 1 20 ? C26 CLR 506 R 1 HETATM 27 C C27 CLR . . . J 6 121.237 113.367 86.631 1 20 ? C27 CLR 506 R 1 HETATM 28 O O1 CLR . . . J 6 113.961 113.569 70.336 1 20 ? O1 CLR 506 R 1 HETATM 29 H H11 CLR . . . J 6 114.49 114.788 74.218 1 20 ? H11 CLR 506 R 1 HETATM 30 H H12 CLR . . . J 6 113.33 113.641 74.866 1 20 ? H12 CLR 506 R 1 HETATM 31 H H21 CLR . . . J 6 112.932 112.686 72.64 1 20 ? H21 CLR 506 R 1 HETATM 32 H H22 CLR . . . J 6 112.757 114.438 72.575 1 20 ? H22 CLR 506 R 1 HETATM 33 H H3 CLR . . . J 6 115.06 114.682 71.686 1 20 ? H3 CLR 506 R 1 HETATM 34 H H41 CLR . . . J 6 116.375 112.683 71.05 1 20 ? H41 CLR 506 R 1 HETATM 35 H H42 CLR . . . J 6 115.135 111.629 71.713 1 20 ? H42 CLR 506 R 1 HETATM 36 H H6 CLR . . . J 6 118.23 112.604 72.478 1 20 ? H6 CLR 506 R 1 HETATM 37 H H71 CLR . . . J 6 118.945 113.516 74.755 1 20 ? H71 CLR 506 R 1 HETATM 38 H H72 CLR . . . J 6 119.048 111.774 74.669 1 20 ? H72 CLR 506 R 1 HETATM 39 H H8 CLR . . . J 6 117.16 111.415 76.033 1 20 ? H8 CLR 506 R 1 HETATM 40 H H9 CLR . . . J 6 116.431 114.303 75.409 1 20 ? H9 CLR 506 R 1 HETATM 41 H H111 CLR . . . J 6 114.713 112.544 77.2 1 20 ? H111 CLR 506 R 1 HETATM 42 H H112 CLR . . . J 6 114.47 114.226 76.777 1 20 ? H112 CLR 506 R 1 HETATM 43 H H121 CLR . . . J 6 115.398 114.004 79.058 1 20 ? H121 CLR 506 R 1 HETATM 44 H H122 CLR . . . J 6 116.456 114.937 78.017 1 20 ? H122 CLR 506 R 1 HETATM 45 H H14 CLR . . . J 6 118.369 114.035 77 1 20 ? H14 CLR 506 R 1 HETATM 46 H H151 CLR . . . J 6 120.272 112.712 77.015 1 20 ? H151 CLR 506 R 1 HETATM 47 H H152 CLR . . . J 6 119.387 111.242 77.498 1 20 ? H152 CLR 506 R 1 HETATM 48 H H161 CLR . . . J 6 120.467 113.373 79.24 1 20 ? H161 CLR 506 R 1 HETATM 49 H H162 CLR . . . J 6 119.763 111.814 79.711 1 20 ? H162 CLR 506 R 1 HETATM 50 H H17 CLR . . . J 6 118.452 114.523 79.389 1 20 ? H17 CLR 506 R 1 HETATM 51 H H181 CLR . . . J 6 116.051 111.571 79.695 1 20 ? H181 CLR 506 R 1 HETATM 52 H H182 CLR . . . J 6 117.543 110.85 79.08 1 20 ? H182 CLR 506 R 1 HETATM 53 H H183 CLR . . . J 6 116.154 111.081 78.013 1 20 ? H183 CLR 506 R 1 HETATM 54 H H191 CLR . . . J 6 114.032 111.05 73.822 1 20 ? H191 CLR 506 R 1 HETATM 55 H H192 CLR . . . J 6 114.198 111.22 75.57 1 20 ? H192 CLR 506 R 1 HETATM 56 H H193 CLR . . . J 6 115.541 110.59 74.588 1 20 ? H193 CLR 506 R 1 HETATM 57 H H20 CLR . . . J 6 117.786 112.172 81.234 1 20 ? H20 CLR 506 R 1 HETATM 58 H H211 CLR . . . J 6 116.554 114.956 80.965 1 20 ? H211 CLR 506 R 1 HETATM 59 H H212 CLR . . . J 6 116.574 114.159 82.538 1 20 ? H212 CLR 506 R 1 HETATM 60 H H213 CLR . . . J 6 115.739 113.387 81.19 1 20 ? H213 CLR 506 R 1 HETATM 61 H H221 CLR . . . J 6 118.968 114.776 82.232 1 20 ? H221 CLR 506 R 1 HETATM 62 H H222 CLR . . . J 6 120.062 113.591 81.55 1 20 ? H222 CLR 506 R 1 HETATM 63 H H231 CLR . . . J 6 119.491 111.901 83.15 1 20 ? H231 CLR 506 R 1 HETATM 64 H H232 CLR . . . J 6 118.067 112.765 83.712 1 20 ? H232 CLR 506 R 1 HETATM 65 H H241 CLR . . . J 6 119.404 114.476 84.815 1 20 ? H241 CLR 506 R 1 HETATM 66 H H242 CLR . . . J 6 120.871 113.949 84.006 1 20 ? H242 CLR 506 R 1 HETATM 67 H H25 CLR . . . J 6 120.813 111.783 85.247 1 20 ? H25 CLR 506 R 1 HETATM 68 H H261 CLR . . . J 6 119.342 111.52 87.252 1 20 ? H261 CLR 506 R 1 HETATM 69 H H262 CLR . . . J 6 118.403 111.533 85.757 1 20 ? H262 CLR 506 R 1 HETATM 70 H H263 CLR . . . J 6 118.444 112.98 86.792 1 20 ? H263 CLR 506 R 1 HETATM 71 H H271 CLR . . . J 6 121.553 112.686 87.431 1 20 ? H271 CLR 506 R 1 HETATM 72 H H272 CLR . . . J 6 120.748 114.236 87.089 1 20 ? H272 CLR 506 R 1 HETATM 73 H H273 CLR . . . J 6 122.141 113.716 86.117 1 20 ? H273 CLR 506 R 1 HETATM 74 H H1 CLR . . . J 6 113.261 112.899 70.425 1 20 ? H1 CLR 506 R 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 74 #