data_8IS0 # _model_server_result.job_id Z1S8JN_Vx_wnMncV5-U0Kg _model_server_result.datetime_utc '2024-11-25 03:45:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8is0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8IS0 # _exptl.entry_id 8IS0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.077 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-AMINO-ACRYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.51 _cell.angle_gamma 90 _cell.entry_id 8IS0 _cell.length_a 107.518 _cell.length_b 173.275 _cell.length_c 82.858 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2 B,E,F,H 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -96.255316 0 134.89517 3 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -144.382974 0 202.342754 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 224 A LYS 203 1_555 C C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.28 ? covale ? covale2 C C4A PLP . A PLP 401 1_555 D N DHA . A DHA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale3 B NZ LYS 224 B LYS 203 1_555 E C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.279 ? covale ? covale4 E C4A PLP . B PLP 401 1_555 F N DHA . B DHA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? # _chem_comp.formula 'C3 H5 N O2' _chem_comp.formula_weight 87.077 _chem_comp.id DHA _chem_comp.mon_nstd_flag n _chem_comp.name '2-AMINO-ACRYLIC ACID' _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms 2,3-DIDEHYDROALANINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DHA sing 83 n n N H DHA sing 84 n n N H2 DHA sing 85 n n CA CB DHA doub 86 n n CA C DHA sing 87 n n CB HB1 DHA sing 88 n n CB HB2 DHA sing 89 n n C O DHA doub 90 n n C OXT DHA sing 91 n n OXT HXT DHA sing 92 n n # _atom_sites.entry_id 8IS0 _atom_sites.fract_transf_matrix[1][1] 0.009301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006637 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 401 400 PLP PLP . D 3 DHA A 1 402 500 DHA AMA . E 2 PLP B 1 401 400 PLP PLP . F 3 DHA B 1 402 500 DHA AMA . G 4 HOH A 1 501 8 HOH HOH . G 4 HOH A 2 502 47 HOH HOH . G 4 HOH A 3 503 52 HOH HOH . G 4 HOH A 4 504 19 HOH HOH . G 4 HOH A 5 505 25 HOH HOH . G 4 HOH A 6 506 29 HOH HOH . G 4 HOH A 7 507 5 HOH HOH . G 4 HOH A 8 508 55 HOH HOH . G 4 HOH A 9 509 23 HOH HOH . G 4 HOH A 10 510 30 HOH HOH . G 4 HOH A 11 511 6 HOH HOH . G 4 HOH A 12 512 41 HOH HOH . G 4 HOH A 13 513 59 HOH HOH . G 4 HOH A 14 514 60 HOH HOH . G 4 HOH A 15 515 46 HOH HOH . G 4 HOH A 16 516 51 HOH HOH . G 4 HOH A 17 517 20 HOH HOH . G 4 HOH A 18 518 61 HOH HOH . G 4 HOH A 19 519 49 HOH HOH . G 4 HOH A 20 520 57 HOH HOH . G 4 HOH A 21 521 50 HOH HOH . G 4 HOH A 22 522 58 HOH HOH . G 4 HOH A 23 523 7 HOH HOH . G 4 HOH A 24 524 62 HOH HOH . H 4 HOH B 1 501 53 HOH HOH . H 4 HOH B 2 502 13 HOH HOH . H 4 HOH B 3 503 21 HOH HOH . H 4 HOH B 4 504 4 HOH HOH . H 4 HOH B 5 505 44 HOH HOH . H 4 HOH B 6 506 63 HOH HOH . H 4 HOH B 7 507 33 HOH HOH . H 4 HOH B 8 508 45 HOH HOH . H 4 HOH B 9 509 36 HOH HOH . H 4 HOH B 10 510 34 HOH HOH . H 4 HOH B 11 511 54 HOH HOH . H 4 HOH B 12 512 1 HOH HOH . H 4 HOH B 13 513 17 HOH HOH . H 4 HOH B 14 514 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DHA . . . D 3 -43.367 43.519 81.946 1 99.07 ? N DHA 402 A 1 HETATM 2 C CA DHA . . . D 3 -42.039 42.819 81.967 1 86.16 ? CA DHA 402 A 1 HETATM 3 C CB DHA . . . D 3 -41.234 42.429 80.96 1 68.25 ? CB DHA 402 A 1 HETATM 4 C C DHA . . . D 3 -41.609 42.534 83.445 1 87.66 ? C DHA 402 A 1 HETATM 5 O O DHA . . . D 3 -40.71 41.702 83.631 1 80.42 ? O DHA 402 A 1 HETATM 6 O OXT DHA . . . D 3 -42.156 43.134 84.389 1 79.58 ? OXT DHA 402 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #