data_8ITO # _model_server_result.job_id oM-mvAz9D6UatpvVos5mhA _model_server_result.datetime_utc '2024-11-24 20:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ito # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 8ITO # _exptl.entry_id 8ITO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ITO _cell.length_a 36.565 _cell.length_b 57.856 _cell.length_c 59.198 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ITO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 54 B CYS 54 1_555 B SG CYS 69 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A SG CYS 10 A CYS 10 1_555 D FE FE . A FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc2 A SG CYS 15 A CYS 15 1_555 D FE FE . A FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc3 A SG CYS 45 A CYS 45 1_555 D FE FE . A FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc4 A SG CYS 48 A CYS 48 1_555 D FE FE . A FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 B SG CYS 10 B CYS 10 1_555 F FE FE . B FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 B SG CYS 15 B CYS 15 1_555 F FE FE . B FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 B SG CYS 45 B CYS 45 1_555 F FE FE . B FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc8 B SG CYS 48 B CYS 48 1_555 F FE FE . B FE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ITO _atom_sites.fract_transf_matrix[1][1] 0.027349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 101 101 PO4 PO4 . D 3 FE A 1 102 1 FE FE . E 2 PO4 B 1 101 101 PO4 PO4 . F 3 FE B 1 102 2 FE FE . G 4 HOH A 1 201 56 HOH HOH . G 4 HOH A 2 202 49 HOH HOH . G 4 HOH A 3 203 4 HOH HOH . G 4 HOH A 4 204 47 HOH HOH . G 4 HOH A 5 205 10 HOH HOH . G 4 HOH A 6 206 68 HOH HOH . G 4 HOH A 7 207 1 HOH HOH . G 4 HOH A 8 208 45 HOH HOH . G 4 HOH A 9 209 31 HOH HOH . G 4 HOH A 10 210 26 HOH HOH . G 4 HOH A 11 211 5 HOH HOH . G 4 HOH A 12 212 61 HOH HOH . G 4 HOH A 13 213 9 HOH HOH . G 4 HOH A 14 214 66 HOH HOH . G 4 HOH A 15 215 43 HOH HOH . G 4 HOH A 16 216 64 HOH HOH . G 4 HOH A 17 217 6 HOH HOH . G 4 HOH A 18 218 39 HOH HOH . G 4 HOH A 19 219 67 HOH HOH . G 4 HOH A 20 220 25 HOH HOH . G 4 HOH A 21 221 54 HOH HOH . G 4 HOH A 22 222 30 HOH HOH . G 4 HOH A 23 223 18 HOH HOH . G 4 HOH A 24 224 23 HOH HOH . G 4 HOH A 25 225 35 HOH HOH . G 4 HOH A 26 226 58 HOH HOH . G 4 HOH A 27 227 57 HOH HOH . H 4 HOH B 1 201 63 HOH HOH . H 4 HOH B 2 202 32 HOH HOH . H 4 HOH B 3 203 44 HOH HOH . H 4 HOH B 4 204 8 HOH HOH . H 4 HOH B 5 205 28 HOH HOH . H 4 HOH B 6 206 27 HOH HOH . H 4 HOH B 7 207 29 HOH HOH . H 4 HOH B 8 208 33 HOH HOH . H 4 HOH B 9 209 53 HOH HOH . H 4 HOH B 10 210 37 HOH HOH . H 4 HOH B 11 211 14 HOH HOH . H 4 HOH B 12 212 16 HOH HOH . H 4 HOH B 13 213 24 HOH HOH . H 4 HOH B 14 214 36 HOH HOH . H 4 HOH B 15 215 17 HOH HOH . H 4 HOH B 16 216 40 HOH HOH . H 4 HOH B 17 217 7 HOH HOH . H 4 HOH B 18 218 65 HOH HOH . H 4 HOH B 19 219 22 HOH HOH . H 4 HOH B 20 220 13 HOH HOH . H 4 HOH B 21 221 12 HOH HOH . H 4 HOH B 22 222 3 HOH HOH . H 4 HOH B 23 223 19 HOH HOH . H 4 HOH B 24 224 41 HOH HOH . H 4 HOH B 25 225 34 HOH HOH . H 4 HOH B 26 226 11 HOH HOH . H 4 HOH B 27 227 50 HOH HOH . H 4 HOH B 28 228 38 HOH HOH . H 4 HOH B 29 229 51 HOH HOH . H 4 HOH B 30 230 52 HOH HOH . H 4 HOH B 31 231 2 HOH HOH . H 4 HOH B 32 232 20 HOH HOH . H 4 HOH B 33 233 48 HOH HOH . H 4 HOH B 34 234 55 HOH HOH . H 4 HOH B 35 235 15 HOH HOH . H 4 HOH B 36 236 21 HOH HOH . H 4 HOH B 37 237 60 HOH HOH . H 4 HOH B 38 238 46 HOH HOH . H 4 HOH B 39 239 42 HOH HOH . H 4 HOH B 40 240 59 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.491 _atom_site.Cartn_y -10.31 _atom_site.Cartn_z -20.675 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #