data_8ITT # _model_server_result.job_id ACO4tw6hwoTEZxEiKBKZyw _model_server_result.datetime_utc '2024-11-02 19:34:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8itt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 8ITT # _exptl.entry_id 8ITT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.585 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.78 _cell.angle_gamma 90 _cell.entry_id 8ITT _cell.length_a 95.262 _cell.length_b 38.467 _cell.length_c 182.455 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ITT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf18 B SG CYS 51 B CYS 53 1_555 B SG CYS 60 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf19 B SG CYS 73 B CYS 75 1_555 B SG CYS 89 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf20 B SG CYS 88 B CYS 90 1_555 B SG CYS 99 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf21 B SG CYS 122 B CYS 124 1_555 B SG CYS 167 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf22 B SG CYS 166 B CYS 168 1_555 B SG CYS 175 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf23 B SG CYS 198 B CYS 200 1_555 B SG CYS 244 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf24 B SG CYS 243 B CYS 245 1_555 B SG CYS 251 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf25 B SG CYS 263 B CYS 265 1_555 B SG CYS 277 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf26 B SG CYS 276 B CYS 278 1_555 B SG CYS 287 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf27 B SG CYS 314 B CYS 316 1_555 B SG CYS 359 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 B SG CYS 358 B CYS 360 1_555 B SG CYS 367 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf29 B SG CYS 390 B CYS 392 1_555 B SG CYS 436 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf30 B SG CYS 435 B CYS 437 1_555 B SG CYS 446 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf31 B SG CYS 459 B CYS 461 1_555 B SG CYS 475 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf32 B SG CYS 474 B CYS 476 1_555 B SG CYS 485 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf33 B SG CYS 512 B CYS 514 1_555 B SG CYS 557 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf34 B SG CYS 556 B CYS 558 1_555 B SG CYS 565 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'C22 H47 N O7 P 1' _chem_comp.formula_weight 468.585 _chem_comp.id LPC _chem_comp.mon_nstd_flag . _chem_comp.name '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C0A N1 LPC sing 192 n n C0A H0A1 LPC sing 193 n n C0A H0A2 LPC sing 194 n n C0A H0A3 LPC sing 195 n n C0B N1 LPC sing 196 n n C0B H0B1 LPC sing 197 n n C0B H0B2 LPC sing 198 n n C0B H0B3 LPC sing 199 n n C0C N1 LPC sing 200 n n C0C H0C1 LPC sing 201 n n C0C H0C2 LPC sing 202 n n C0C H0C3 LPC sing 203 n n N1 C2 LPC sing 204 n n C2 C3 LPC sing 205 n n C2 H21 LPC sing 206 n n C2 H22 LPC sing 207 n n C3 O4 LPC sing 208 n n C3 H31 LPC sing 209 n n C3 H32 LPC sing 210 n n O4 P5 LPC sing 211 n n P5 O5A LPC sing 212 n n P5 O5B LPC doub 213 n n P5 O6 LPC sing 214 n n O5A HO5A LPC sing 215 n n O6 C7 LPC sing 216 n n C7 C8 LPC sing 217 n n C7 H71 LPC sing 218 n n C7 H72 LPC sing 219 n n C8 O8 LPC sing 220 n n C8 C9 LPC sing 221 n n C8 H8 LPC sing 222 n n O8 HO8 LPC sing 223 n n C9 OQ2 LPC sing 224 n n C9 H91 LPC sing 225 n n C9 H92 LPC sing 226 n n OQ1 CA LPC doub 227 n n OQ2 CA LPC sing 228 n n CA CB LPC sing 229 n n CB CC LPC sing 230 n n CB HB1 LPC sing 231 n n CB HB2 LPC sing 232 n n CC CD LPC sing 233 n n CC HC1 LPC sing 234 n n CC HC2 LPC sing 235 n n CD CE LPC sing 236 n n CD HD1 LPC sing 237 n n CD HD2 LPC sing 238 n n CE CF LPC sing 239 n n CE HE1 LPC sing 240 n n CE HE2 LPC sing 241 n n CF CG LPC sing 242 n n CF HF1 LPC sing 243 n n CF HF2 LPC sing 244 n n CG CH LPC sing 245 n n CG HG1 LPC sing 246 n n CG HG2 LPC sing 247 n n CH CI LPC sing 248 n n CH HH1 LPC sing 249 n n CH HH2 LPC sing 250 n n CI CJ LPC sing 251 n n CI HI1 LPC sing 252 n n CI HI2 LPC sing 253 n n CJ CK LPC sing 254 n n CJ HJ1 LPC sing 255 n n CJ HJ2 LPC sing 256 n n CK CL LPC sing 257 n n CK HK1 LPC sing 258 n n CK HK2 LPC sing 259 n n CL CM LPC sing 260 n n CL HL1 LPC sing 261 n n CL HL2 LPC sing 262 n n CM CN LPC sing 263 n n CM HM1 LPC sing 264 n n CM HM2 LPC sing 265 n n CN HN1 LPC sing 266 n n CN HN2 LPC sing 267 n n CN HN3 LPC sing 268 n n # _atom_sites.entry_id 8ITT _atom_sites.fract_transf_matrix[1][1] 0.010497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00277 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MYR A 1 601 1006 MYR MYR . D 2 MYR A 1 602 1002 MYR MYR . E 2 MYR A 1 603 1007 MYR MYR . F 3 LPC A 1 604 1001 LPC LPC . G 3 LPC A 1 605 1003 LPC LPC . H 3 LPC A 1 606 1005 LPC LPC . I 2 MYR B 1 601 1007 MYR MYR . J 2 MYR B 1 602 1002 MYR MYR . K 3 LPC B 1 603 1001 LPC LPC . L 3 LPC B 1 604 1003 LPC LPC . M 3 LPC B 1 605 1005 LPC LPC . N 2 MYR B 1 606 1006 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C0A LPC . . . F 3 -3.693 -1.01 82.088 1 47.67 ? C0A LPC 604 A 1 HETATM 2 C C0B LPC . . . F 3 -5.321 -0.755 80.337 1 47.65 ? C0B LPC 604 A 1 HETATM 3 C C0C LPC . . . F 3 -3.972 1.173 81.005 1 49.19 ? C0C LPC 604 A 1 HETATM 4 N N1 LPC . . . F 3 -4.674 -0.05 81.493 1 52.87 ? N1 LPC 604 A 1 HETATM 5 C C2 LPC . . . F 3 -5.719 0.281 82.506 1 51.36 ? C2 LPC 604 A 1 HETATM 6 C C3 LPC . . . F 3 -6.26 1.704 82.477 1 48.48 ? C3 LPC 604 A 1 HETATM 7 O O4 LPC . . . F 3 -7.06 1.742 81.319 1 50.78 ? O4 LPC 604 A 1 HETATM 8 P P5 LPC . . . F 3 -8.415 2.715 81.4 1 57.75 ? P5 LPC 604 A 1 HETATM 9 O O5A LPC . . . F 3 -8.685 3.304 79.997 1 53 ? O5A LPC 604 A 1 HETATM 10 O O5B LPC . . . F 3 -8.21 3.708 82.61 1 49.79 ? O5B LPC 604 A 1 HETATM 11 O O6 LPC . . . F 3 -9.623 1.63 81.563 1 46.6 ? O6 LPC 604 A 1 HETATM 12 C C7 LPC . . . F 3 -10.898 1.802 80.896 1 45.42 ? C7 LPC 604 A 1 HETATM 13 C C8 LPC . . . F 3 -11.857 1.11 81.843 1 49.34 ? C8 LPC 604 A 1 HETATM 14 O O8 LPC . . . F 3 -11.719 -0.305 81.884 1 43.03 ? O8 LPC 604 A 1 HETATM 15 C C9 LPC . . . F 3 -13.318 1.498 81.627 1 54.58 ? C9 LPC 604 A 1 HETATM 16 O OQ1 LPC . . . F 3 -15.689 2.176 83.154 1 53.12 ? OQ1 LPC 604 A 1 HETATM 17 O OQ2 LPC . . . F 3 -13.397 2.465 82.638 1 59.13 ? OQ2 LPC 604 A 1 HETATM 18 C CA LPC . . . F 3 -14.531 2.483 83.49 1 59.91 ? CA LPC 604 A 1 HETATM 19 C CB LPC . . . F 3 -14.126 2.899 84.867 1 57.44 ? CB LPC 604 A 1 HETATM 20 C CC LPC . . . F 3 -14.198 4.419 84.935 1 55.99 ? CC LPC 604 A 1 HETATM 21 C CD LPC . . . F 3 -13.664 5.214 86.101 1 56.95 ? CD LPC 604 A 1 HETATM 22 C CE LPC . . . F 3 -12.178 4.991 86.182 1 52.57 ? CE LPC 604 A 1 HETATM 23 C CF LPC . . . F 3 -11.711 6.081 87.053 1 49.19 ? CF LPC 604 A 1 HETATM 24 C CG LPC . . . F 3 -10.216 5.938 87.129 1 50.72 ? CG LPC 604 A 1 HETATM 25 C CH LPC . . . F 3 -9.956 6.809 88.313 1 52.34 ? CH LPC 604 A 1 HETATM 26 C CI LPC . . . F 3 -9.223 5.989 89.344 1 49.26 ? CI LPC 604 A 1 HETATM 27 C CJ LPC . . . F 3 -8.441 7.008 90.152 1 47.88 ? CJ LPC 604 A 1 HETATM 28 C CK LPC . . . F 3 -9.08 7.94 91.166 1 44.29 ? CK LPC 604 A 1 HETATM 29 C CL LPC . . . F 3 -8.265 9.218 91.357 1 44.43 ? CL LPC 604 A 1 HETATM 30 C CM LPC . . . F 3 -6.865 9.003 91.938 1 46.09 ? CM LPC 604 A 1 HETATM 31 C CN LPC . . . F 3 -6.067 10.292 91.822 1 45 ? CN LPC 604 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #