data_8ITT
#
_model_server_result.job_id            BeQCoZLtnXxJT9yOoZkySw 
_model_server_result.datetime_utc      '2024-11-23 11:52:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8itt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":605}' 
#
_entry.id    8ITT 
#
_exptl.entry_id    8ITT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              468.585 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.78 
_cell.angle_gamma         90 
_cell.entry_id            8ITT 
_cell.length_a            95.262 
_cell.length_b            38.467 
_cell.length_c            182.455 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ITT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H 1 1 
B,I,J,K,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf18 B SG CYS 51 B CYS 53 1_555 B SG CYS 60 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf19 B SG CYS 73 B CYS 75 1_555 B SG CYS 89 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf20 B SG CYS 88 B CYS 90 1_555 B SG CYS 99 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf21 B SG CYS 122 B CYS 124 1_555 B SG CYS 167 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf22 B SG CYS 166 B CYS 168 1_555 B SG CYS 175 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf23 B SG CYS 198 B CYS 200 1_555 B SG CYS 244 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf24 B SG CYS 243 B CYS 245 1_555 B SG CYS 251 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf25 B SG CYS 263 B CYS 265 1_555 B SG CYS 277 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf26 B SG CYS 276 B CYS 278 1_555 B SG CYS 287 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf27 B SG CYS 314 B CYS 316 1_555 B SG CYS 359 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf28 B SG CYS 358 B CYS 360 1_555 B SG CYS 367 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf29 B SG CYS 390 B CYS 392 1_555 B SG CYS 436 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf30 B SG CYS 435 B CYS 437 1_555 B SG CYS 446 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf31 B SG CYS 459 B CYS 461 1_555 B SG CYS 475 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf32 B SG CYS 474 B CYS 476 1_555 B SG CYS 485 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf33 B SG CYS 512 B CYS 514 1_555 B SG CYS 557 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf34 B SG CYS 556 B CYS 558 1_555 B SG CYS 565 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
#
_chem_comp.formula           'C22 H47 N O7 P 1' 
_chem_comp.formula_weight    468.585 
_chem_comp.id                LPC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C0A N1 LPC sing 192 n n 
C0A H0A1 LPC sing 193 n n 
C0A H0A2 LPC sing 194 n n 
C0A H0A3 LPC sing 195 n n 
C0B N1 LPC sing 196 n n 
C0B H0B1 LPC sing 197 n n 
C0B H0B2 LPC sing 198 n n 
C0B H0B3 LPC sing 199 n n 
C0C N1 LPC sing 200 n n 
C0C H0C1 LPC sing 201 n n 
C0C H0C2 LPC sing 202 n n 
C0C H0C3 LPC sing 203 n n 
N1 C2 LPC sing 204 n n 
C2 C3 LPC sing 205 n n 
C2 H21 LPC sing 206 n n 
C2 H22 LPC sing 207 n n 
C3 O4 LPC sing 208 n n 
C3 H31 LPC sing 209 n n 
C3 H32 LPC sing 210 n n 
O4 P5 LPC sing 211 n n 
P5 O5A LPC sing 212 n n 
P5 O5B LPC doub 213 n n 
P5 O6 LPC sing 214 n n 
O5A HO5A LPC sing 215 n n 
O6 C7 LPC sing 216 n n 
C7 C8 LPC sing 217 n n 
C7 H71 LPC sing 218 n n 
C7 H72 LPC sing 219 n n 
C8 O8 LPC sing 220 n n 
C8 C9 LPC sing 221 n n 
C8 H8 LPC sing 222 n n 
O8 HO8 LPC sing 223 n n 
C9 OQ2 LPC sing 224 n n 
C9 H91 LPC sing 225 n n 
C9 H92 LPC sing 226 n n 
OQ1 CA LPC doub 227 n n 
OQ2 CA LPC sing 228 n n 
CA CB LPC sing 229 n n 
CB CC LPC sing 230 n n 
CB HB1 LPC sing 231 n n 
CB HB2 LPC sing 232 n n 
CC CD LPC sing 233 n n 
CC HC1 LPC sing 234 n n 
CC HC2 LPC sing 235 n n 
CD CE LPC sing 236 n n 
CD HD1 LPC sing 237 n n 
CD HD2 LPC sing 238 n n 
CE CF LPC sing 239 n n 
CE HE1 LPC sing 240 n n 
CE HE2 LPC sing 241 n n 
CF CG LPC sing 242 n n 
CF HF1 LPC sing 243 n n 
CF HF2 LPC sing 244 n n 
CG CH LPC sing 245 n n 
CG HG1 LPC sing 246 n n 
CG HG2 LPC sing 247 n n 
CH CI LPC sing 248 n n 
CH HH1 LPC sing 249 n n 
CH HH2 LPC sing 250 n n 
CI CJ LPC sing 251 n n 
CI HI1 LPC sing 252 n n 
CI HI2 LPC sing 253 n n 
CJ CK LPC sing 254 n n 
CJ HJ1 LPC sing 255 n n 
CJ HJ2 LPC sing 256 n n 
CK CL LPC sing 257 n n 
CK HK1 LPC sing 258 n n 
CK HK2 LPC sing 259 n n 
CL CM LPC sing 260 n n 
CL HL1 LPC sing 261 n n 
CL HL2 LPC sing 262 n n 
CM CN LPC sing 263 n n 
CM HM1 LPC sing 264 n n 
CM HM2 LPC sing 265 n n 
CN HN1 LPC sing 266 n n 
CN HN2 LPC sing 267 n n 
CN HN3 LPC sing 268 n n 
#
_atom_sites.entry_id                     8ITT 
_atom_sites.fract_transf_matrix[1][1]    0.010497 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00277 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025996 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005668 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MYR A 1 601 1006 MYR MYR . 
D 2 MYR A 1 602 1002 MYR MYR . 
E 2 MYR A 1 603 1007 MYR MYR . 
F 3 LPC A 1 604 1001 LPC LPC . 
G 3 LPC A 1 605 1003 LPC LPC . 
H 3 LPC A 1 606 1005 LPC LPC . 
I 2 MYR B 1 601 1007 MYR MYR . 
J 2 MYR B 1 602 1002 MYR MYR . 
K 3 LPC B 1 603 1001 LPC LPC . 
L 3 LPC B 1 604 1003 LPC LPC . 
M 3 LPC B 1 605 1005 LPC LPC . 
N 2 MYR B 1 606 1006 MYR MYR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C0A LPC . . . M 3 0.472 -7.78 147.175 1 56.54 ? C0A LPC 605 B 1 
HETATM 2 C C0B LPC . . . M 3 0.97 -10.248 147.703 1 57.15 ? C0B LPC 605 B 1 
HETATM 3 C C0C LPC . . . M 3 -1.332 -9.588 146.664 1 56.97 ? C0C LPC 605 B 1 
HETATM 4 N N1 LPC . . . M 3 0.026 -9.22 147.189 1 60.1 ? N1 LPC 605 B 1 
HETATM 5 C C2 LPC . . . M 3 0.601 -9.418 145.763 1 55.7 ? C2 LPC 605 B 1 
HETATM 6 C C3 LPC . . . M 3 0.454 -10.712 144.876 1 52.38 ? C3 LPC 605 B 1 
HETATM 7 O O4 LPC . . . M 3 -0.66 -10.632 143.963 1 54.33 ? O4 LPC 605 B 1 
HETATM 8 P P5 LPC . . . M 3 -1.979 -11.648 144.098 1 60.26 ? P5 LPC 605 B 1 
HETATM 9 O O5A LPC . . . M 3 -2.674 -11.742 142.716 1 54.12 ? O5A LPC 605 B 1 
HETATM 10 O O5B LPC . . . M 3 -2.919 -11.215 145.273 1 59.3 ? O5B LPC 605 B 1 
HETATM 11 O O6 LPC . . . M 3 -1.269 -13.025 144.653 1 56.6 ? O6 LPC 605 B 1 
HETATM 12 C C7 LPC . . . M 3 -1.883 -14.256 144.282 1 55.9 ? C7 LPC 605 B 1 
HETATM 13 C C8 LPC . . . M 3 -1.426 -14.462 142.91 1 57.16 ? C8 LPC 605 B 1 
HETATM 14 O O8 LPC . . . M 3 -2.499 -14.854 142.088 1 57.4 ? O8 LPC 605 B 1 
HETATM 15 C C9 LPC . . . M 3 -0.477 -15.539 142.809 1 57.09 ? C9 LPC 605 B 1 
HETATM 16 O OQ1 LPC . . . M 3 1.898 -17.5 144.305 1 60.52 ? OQ1 LPC 605 B 1 
HETATM 17 O OQ2 LPC . . . M 3 0.048 -16.095 144.024 1 56.18 ? OQ2 LPC 605 B 1 
HETATM 18 C CA LPC . . . M 3 0.891 -17.126 143.675 1 57.97 ? CA LPC 605 B 1 
HETATM 19 C CB LPC . . . M 3 0.447 -17.908 142.511 1 52.26 ? CB LPC 605 B 1 
HETATM 20 C CC LPC . . . M 3 -0.722 -18.625 143.098 1 48 ? CC LPC 605 B 1 
HETATM 21 C CD LPC . . . M 3 -0.453 -20.037 143.313 1 49.12 ? CD LPC 605 B 1 
HETATM 22 C CE LPC . . . M 3 -1.249 -20.64 142.23 1 49.73 ? CE LPC 605 B 1 
HETATM 23 C CF LPC . . . M 3 -1.324 -22.087 142.47 1 49.39 ? CF LPC 605 B 1 
HETATM 24 C CG LPC . . . M 3 -2.168 -22.239 141.302 1 53.86 ? CG LPC 605 B 1 
HETATM 25 C CH LPC . . . M 3 -2.716 -23.631 141.356 1 56.99 ? CH LPC 605 B 1 
HETATM 26 C CI LPC . . . M 3 -4.215 -23.354 141.287 1 57.62 ? CI LPC 605 B 1 
HETATM 27 C CJ LPC . . . M 3 -4.682 -23.196 139.847 1 59.37 ? CJ LPC 605 B 1 
HETATM 28 C CK LPC . . . M 3 -4.395 -24.428 138.975 1 63.34 ? CK LPC 605 B 1 
HETATM 29 C CL LPC . . . M 3 -4.623 -25.793 139.642 1 62.12 ? CL LPC 605 B 1 
HETATM 30 C CM LPC . . . M 3 -3.595 -26.858 139.23 1 63.93 ? CM LPC 605 B 1 
HETATM 31 C CN LPC . . . M 3 -2.112 -26.442 139.245 1 65.34 ? CN LPC 605 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#