data_8ITT # _model_server_result.job_id XJB8CpGLH1NTLjkOsZiyJw _model_server_result.datetime_utc '2024-11-02 19:27:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8itt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":606}' # _entry.id 8ITT # _exptl.entry_id 8ITT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.585 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.78 _cell.angle_gamma 90 _cell.entry_id 8ITT _cell.length_a 95.262 _cell.length_b 38.467 _cell.length_c 182.455 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ITT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf18 B SG CYS 51 B CYS 53 1_555 B SG CYS 60 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf19 B SG CYS 73 B CYS 75 1_555 B SG CYS 89 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf20 B SG CYS 88 B CYS 90 1_555 B SG CYS 99 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf21 B SG CYS 122 B CYS 124 1_555 B SG CYS 167 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf22 B SG CYS 166 B CYS 168 1_555 B SG CYS 175 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf23 B SG CYS 198 B CYS 200 1_555 B SG CYS 244 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf24 B SG CYS 243 B CYS 245 1_555 B SG CYS 251 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf25 B SG CYS 263 B CYS 265 1_555 B SG CYS 277 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf26 B SG CYS 276 B CYS 278 1_555 B SG CYS 287 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf27 B SG CYS 314 B CYS 316 1_555 B SG CYS 359 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 B SG CYS 358 B CYS 360 1_555 B SG CYS 367 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf29 B SG CYS 390 B CYS 392 1_555 B SG CYS 436 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf30 B SG CYS 435 B CYS 437 1_555 B SG CYS 446 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf31 B SG CYS 459 B CYS 461 1_555 B SG CYS 475 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf32 B SG CYS 474 B CYS 476 1_555 B SG CYS 485 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf33 B SG CYS 512 B CYS 514 1_555 B SG CYS 557 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf34 B SG CYS 556 B CYS 558 1_555 B SG CYS 565 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'C22 H47 N O7 P 1' _chem_comp.formula_weight 468.585 _chem_comp.id LPC _chem_comp.mon_nstd_flag . _chem_comp.name '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C0A N1 LPC sing 192 n n C0A H0A1 LPC sing 193 n n C0A H0A2 LPC sing 194 n n C0A H0A3 LPC sing 195 n n C0B N1 LPC sing 196 n n C0B H0B1 LPC sing 197 n n C0B H0B2 LPC sing 198 n n C0B H0B3 LPC sing 199 n n C0C N1 LPC sing 200 n n C0C H0C1 LPC sing 201 n n C0C H0C2 LPC sing 202 n n C0C H0C3 LPC sing 203 n n N1 C2 LPC sing 204 n n C2 C3 LPC sing 205 n n C2 H21 LPC sing 206 n n C2 H22 LPC sing 207 n n C3 O4 LPC sing 208 n n C3 H31 LPC sing 209 n n C3 H32 LPC sing 210 n n O4 P5 LPC sing 211 n n P5 O5A LPC sing 212 n n P5 O5B LPC doub 213 n n P5 O6 LPC sing 214 n n O5A HO5A LPC sing 215 n n O6 C7 LPC sing 216 n n C7 C8 LPC sing 217 n n C7 H71 LPC sing 218 n n C7 H72 LPC sing 219 n n C8 O8 LPC sing 220 n n C8 C9 LPC sing 221 n n C8 H8 LPC sing 222 n n O8 HO8 LPC sing 223 n n C9 OQ2 LPC sing 224 n n C9 H91 LPC sing 225 n n C9 H92 LPC sing 226 n n OQ1 CA LPC doub 227 n n OQ2 CA LPC sing 228 n n CA CB LPC sing 229 n n CB CC LPC sing 230 n n CB HB1 LPC sing 231 n n CB HB2 LPC sing 232 n n CC CD LPC sing 233 n n CC HC1 LPC sing 234 n n CC HC2 LPC sing 235 n n CD CE LPC sing 236 n n CD HD1 LPC sing 237 n n CD HD2 LPC sing 238 n n CE CF LPC sing 239 n n CE HE1 LPC sing 240 n n CE HE2 LPC sing 241 n n CF CG LPC sing 242 n n CF HF1 LPC sing 243 n n CF HF2 LPC sing 244 n n CG CH LPC sing 245 n n CG HG1 LPC sing 246 n n CG HG2 LPC sing 247 n n CH CI LPC sing 248 n n CH HH1 LPC sing 249 n n CH HH2 LPC sing 250 n n CI CJ LPC sing 251 n n CI HI1 LPC sing 252 n n CI HI2 LPC sing 253 n n CJ CK LPC sing 254 n n CJ HJ1 LPC sing 255 n n CJ HJ2 LPC sing 256 n n CK CL LPC sing 257 n n CK HK1 LPC sing 258 n n CK HK2 LPC sing 259 n n CL CM LPC sing 260 n n CL HL1 LPC sing 261 n n CL HL2 LPC sing 262 n n CM CN LPC sing 263 n n CM HM1 LPC sing 264 n n CM HM2 LPC sing 265 n n CN HN1 LPC sing 266 n n CN HN2 LPC sing 267 n n CN HN3 LPC sing 268 n n # _atom_sites.entry_id 8ITT _atom_sites.fract_transf_matrix[1][1] 0.010497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00277 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MYR A 1 601 1006 MYR MYR . D 2 MYR A 1 602 1002 MYR MYR . E 2 MYR A 1 603 1007 MYR MYR . F 3 LPC A 1 604 1001 LPC LPC . G 3 LPC A 1 605 1003 LPC LPC . H 3 LPC A 1 606 1005 LPC LPC . I 2 MYR B 1 601 1007 MYR MYR . J 2 MYR B 1 602 1002 MYR MYR . K 3 LPC B 1 603 1001 LPC LPC . L 3 LPC B 1 604 1003 LPC LPC . M 3 LPC B 1 605 1005 LPC LPC . N 2 MYR B 1 606 1006 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C0A LPC . . . H 3 -30.733 9.541 53.593 1 61.62 ? C0A LPC 606 A 1 HETATM 2 C C0B LPC . . . H 3 -28.963 8.312 52.432 1 63.38 ? C0B LPC 606 A 1 HETATM 3 C C0C LPC . . . H 3 -31.24 8.228 51.604 1 63.94 ? C0C LPC 606 A 1 HETATM 4 N N1 LPC . . . H 3 -30.397 8.311 52.822 1 65.69 ? N1 LPC 606 A 1 HETATM 5 C C2 LPC . . . H 3 -30.65 7.152 53.687 1 63.58 ? C2 LPC 606 A 1 HETATM 6 C C3 LPC . . . H 3 -29.652 7.141 54.841 1 61.17 ? C3 LPC 606 A 1 HETATM 7 O O4 LPC . . . H 3 -29.13 5.829 54.986 1 66.46 ? O4 LPC 606 A 1 HETATM 8 P P5 LPC . . . H 3 -27.8 5.568 55.895 1 67.7 ? P5 LPC 606 A 1 HETATM 9 O O5A LPC . . . H 3 -28.119 4.417 56.861 1 62.75 ? O5A LPC 606 A 1 HETATM 10 O O5B LPC . . . H 3 -27.289 6.934 56.398 1 70.28 ? O5B LPC 606 A 1 HETATM 11 O O6 LPC . . . H 3 -26.707 5.072 54.801 1 59.74 ? O6 LPC 606 A 1 HETATM 12 C C7 LPC . . . H 3 -26.456 3.668 54.689 1 58.93 ? C7 LPC 606 A 1 HETATM 13 C C8 LPC . . . H 3 -25.137 3.36 55.399 1 59.07 ? C8 LPC 606 A 1 HETATM 14 O O8 LPC . . . H 3 -24.146 4.425 55.242 1 56.39 ? O8 LPC 606 A 1 HETATM 15 C C9 LPC . . . H 3 -24.642 2.004 54.872 1 57.8 ? C9 LPC 606 A 1 HETATM 16 O OQ1 LPC . . . H 3 -21.759 0.131 55.989 1 59.23 ? OQ1 LPC 606 A 1 HETATM 17 O OQ2 LPC . . . H 3 -23.433 1.686 55.575 1 62.46 ? OQ2 LPC 606 A 1 HETATM 18 C CA LPC . . . H 3 -22.792 0.394 55.361 1 62.21 ? CA LPC 606 A 1 HETATM 19 C CB LPC . . . H 3 -23.413 -0.597 54.388 1 53.99 ? CB LPC 606 A 1 HETATM 20 C CC LPC . . . H 3 -24.54 -1.35 55.094 1 49.87 ? CC LPC 606 A 1 HETATM 21 C CD LPC . . . H 3 -24.601 -2.797 54.627 1 52.27 ? CD LPC 606 A 1 HETATM 22 C CE LPC . . . H 3 -25.31 -2.883 53.262 1 52.71 ? CE LPC 606 A 1 HETATM 23 C CF LPC . . . H 3 -25.545 -4.322 52.815 1 53.2 ? CF LPC 606 A 1 HETATM 24 C CG LPC . . . H 3 -26.879 -4.835 53.35 1 55.3 ? CG LPC 606 A 1 HETATM 25 C CH LPC . . . H 3 -26.802 -6.311 53.773 1 57.57 ? CH LPC 606 A 1 HETATM 26 C CI LPC . . . H 3 -28.084 -7.036 53.325 1 62.13 ? CI LPC 606 A 1 HETATM 27 C CJ LPC . . . H 3 -29.045 -6.102 52.555 1 56.74 ? CJ LPC 606 A 1 HETATM 28 C CK LPC . . . H 3 -29.033 -6.468 51.072 1 55.24 ? CK LPC 606 A 1 HETATM 29 C CL LPC . . . H 3 -29.45 -7.927 50.871 1 56.58 ? CL LPC 606 A 1 HETATM 30 C CM LPC . . . H 3 -28.798 -8.506 49.614 1 55.1 ? CM LPC 606 A 1 HETATM 31 C CN LPC . . . H 3 -28.777 -10.025 49.652 1 51.93 ? CN LPC 606 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #