data_8IU9 # _model_server_result.job_id W6L7qYcIhrN6uVdyoTJMwQ _model_server_result.datetime_utc '2025-07-07 06:47:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 8IU9 # _exptl.entry_id 8IU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.405 _cell.angle_gamma 90 _cell.entry_id 8IU9 _cell.length_a 155.181 _cell.length_b 48.381 _cell.length_c 76.487 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 113 A ASP 123 1_555 E NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 E NA NA . A NA 604 1_555 F O HOH . A HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc3 E NA NA . A NA 604 1_555 F O HOH . A HOH 849 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8IU9 _atom_sites.fract_transf_matrix[1][1] 0.006444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001655 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 601 601 GLC GLC . C 3 BGC A 1 602 602 BGC BGC . D 2 GLC A 1 603 603 GLC GLC . E 4 NA A 1 604 1 NA NA . F 5 HOH A 1 701 249 HOH HOH . F 5 HOH A 2 702 225 HOH HOH . F 5 HOH A 3 703 195 HOH HOH . F 5 HOH A 4 704 151 HOH HOH . F 5 HOH A 5 705 24 HOH HOH . F 5 HOH A 6 706 250 HOH HOH . F 5 HOH A 7 707 159 HOH HOH . F 5 HOH A 8 708 22 HOH HOH . F 5 HOH A 9 709 145 HOH HOH . F 5 HOH A 10 710 90 HOH HOH . F 5 HOH A 11 711 115 HOH HOH . F 5 HOH A 12 712 217 HOH HOH . F 5 HOH A 13 713 84 HOH HOH . F 5 HOH A 14 714 85 HOH HOH . F 5 HOH A 15 715 18 HOH HOH . F 5 HOH A 16 716 62 HOH HOH . F 5 HOH A 17 717 114 HOH HOH . F 5 HOH A 18 718 236 HOH HOH . F 5 HOH A 19 719 38 HOH HOH . F 5 HOH A 20 720 231 HOH HOH . F 5 HOH A 21 721 245 HOH HOH . F 5 HOH A 22 722 208 HOH HOH . F 5 HOH A 23 723 167 HOH HOH . F 5 HOH A 24 724 183 HOH HOH . F 5 HOH A 25 725 139 HOH HOH . F 5 HOH A 26 726 10 HOH HOH . F 5 HOH A 27 727 199 HOH HOH . F 5 HOH A 28 728 235 HOH HOH . F 5 HOH A 29 729 33 HOH HOH . F 5 HOH A 30 730 50 HOH HOH . F 5 HOH A 31 731 241 HOH HOH . F 5 HOH A 32 732 14 HOH HOH . F 5 HOH A 33 733 203 HOH HOH . F 5 HOH A 34 734 88 HOH HOH . F 5 HOH A 35 735 128 HOH HOH . F 5 HOH A 36 736 184 HOH HOH . F 5 HOH A 37 737 152 HOH HOH . F 5 HOH A 38 738 230 HOH HOH . F 5 HOH A 39 739 162 HOH HOH . F 5 HOH A 40 740 49 HOH HOH . F 5 HOH A 41 741 52 HOH HOH . F 5 HOH A 42 742 4 HOH HOH . F 5 HOH A 43 743 39 HOH HOH . F 5 HOH A 44 744 68 HOH HOH . F 5 HOH A 45 745 17 HOH HOH . F 5 HOH A 46 746 46 HOH HOH . F 5 HOH A 47 747 19 HOH HOH . F 5 HOH A 48 748 209 HOH HOH . F 5 HOH A 49 749 6 HOH HOH . F 5 HOH A 50 750 109 HOH HOH . F 5 HOH A 51 751 140 HOH HOH . F 5 HOH A 52 752 20 HOH HOH . F 5 HOH A 53 753 131 HOH HOH . F 5 HOH A 54 754 15 HOH HOH . F 5 HOH A 55 755 95 HOH HOH . F 5 HOH A 56 756 125 HOH HOH . F 5 HOH A 57 757 200 HOH HOH . F 5 HOH A 58 758 13 HOH HOH . F 5 HOH A 59 759 16 HOH HOH . F 5 HOH A 60 760 44 HOH HOH . F 5 HOH A 61 761 58 HOH HOH . F 5 HOH A 62 762 117 HOH HOH . F 5 HOH A 63 763 142 HOH HOH . F 5 HOH A 64 764 226 HOH HOH . F 5 HOH A 65 765 34 HOH HOH . F 5 HOH A 66 766 216 HOH HOH . F 5 HOH A 67 767 31 HOH HOH . F 5 HOH A 68 768 144 HOH HOH . F 5 HOH A 69 769 157 HOH HOH . F 5 HOH A 70 770 2 HOH HOH . F 5 HOH A 71 771 118 HOH HOH . F 5 HOH A 72 772 57 HOH HOH . F 5 HOH A 73 773 69 HOH HOH . F 5 HOH A 74 774 104 HOH HOH . F 5 HOH A 75 775 136 HOH HOH . F 5 HOH A 76 776 25 HOH HOH . F 5 HOH A 77 777 165 HOH HOH . F 5 HOH A 78 778 82 HOH HOH . F 5 HOH A 79 779 211 HOH HOH . F 5 HOH A 80 780 96 HOH HOH . F 5 HOH A 81 781 224 HOH HOH . F 5 HOH A 82 782 35 HOH HOH . F 5 HOH A 83 783 252 HOH HOH . F 5 HOH A 84 784 244 HOH HOH . F 5 HOH A 85 785 187 HOH HOH . F 5 HOH A 86 786 78 HOH HOH . F 5 HOH A 87 787 201 HOH HOH . F 5 HOH A 88 788 123 HOH HOH . F 5 HOH A 89 789 212 HOH HOH . F 5 HOH A 90 790 164 HOH HOH . F 5 HOH A 91 791 103 HOH HOH . F 5 HOH A 92 792 138 HOH HOH . F 5 HOH A 93 793 228 HOH HOH . F 5 HOH A 94 794 61 HOH HOH . F 5 HOH A 95 795 87 HOH HOH . F 5 HOH A 96 796 171 HOH HOH . F 5 HOH A 97 797 54 HOH HOH . F 5 HOH A 98 798 229 HOH HOH . F 5 HOH A 99 799 101 HOH HOH . F 5 HOH A 100 800 263 HOH HOH . F 5 HOH A 101 801 48 HOH HOH . F 5 HOH A 102 802 53 HOH HOH . F 5 HOH A 103 803 233 HOH HOH . F 5 HOH A 104 804 93 HOH HOH . F 5 HOH A 105 805 234 HOH HOH . F 5 HOH A 106 806 239 HOH HOH . F 5 HOH A 107 807 130 HOH HOH . F 5 HOH A 108 808 129 HOH HOH . F 5 HOH A 109 809 42 HOH HOH . F 5 HOH A 110 810 154 HOH HOH . F 5 HOH A 111 811 70 HOH HOH . F 5 HOH A 112 812 158 HOH HOH . F 5 HOH A 113 813 143 HOH HOH . F 5 HOH A 114 814 221 HOH HOH . F 5 HOH A 115 815 186 HOH HOH . F 5 HOH A 116 816 80 HOH HOH . F 5 HOH A 117 817 55 HOH HOH . F 5 HOH A 118 818 188 HOH HOH . F 5 HOH A 119 819 153 HOH HOH . F 5 HOH A 120 820 116 HOH HOH . F 5 HOH A 121 821 177 HOH HOH . F 5 HOH A 122 822 29 HOH HOH . F 5 HOH A 123 823 73 HOH HOH . F 5 HOH A 124 824 172 HOH HOH . F 5 HOH A 125 825 47 HOH HOH . F 5 HOH A 126 826 110 HOH HOH . F 5 HOH A 127 827 5 HOH HOH . F 5 HOH A 128 828 81 HOH HOH . F 5 HOH A 129 829 12 HOH HOH . F 5 HOH A 130 830 149 HOH HOH . F 5 HOH A 131 831 8 HOH HOH . F 5 HOH A 132 832 206 HOH HOH . F 5 HOH A 133 833 65 HOH HOH . F 5 HOH A 134 834 41 HOH HOH . F 5 HOH A 135 835 28 HOH HOH . F 5 HOH A 136 836 66 HOH HOH . F 5 HOH A 137 837 11 HOH HOH . F 5 HOH A 138 838 198 HOH HOH . F 5 HOH A 139 839 220 HOH HOH . F 5 HOH A 140 840 40 HOH HOH . F 5 HOH A 141 841 108 HOH HOH . F 5 HOH A 142 842 91 HOH HOH . F 5 HOH A 143 843 133 HOH HOH . F 5 HOH A 144 844 238 HOH HOH . F 5 HOH A 145 845 134 HOH HOH . F 5 HOH A 146 846 21 HOH HOH . F 5 HOH A 147 847 202 HOH HOH . F 5 HOH A 148 848 168 HOH HOH . F 5 HOH A 149 849 30 HOH HOH . F 5 HOH A 150 850 163 HOH HOH . F 5 HOH A 151 851 227 HOH HOH . F 5 HOH A 152 852 222 HOH HOH . F 5 HOH A 153 853 210 HOH HOH . F 5 HOH A 154 854 127 HOH HOH . F 5 HOH A 155 855 75 HOH HOH . F 5 HOH A 156 856 179 HOH HOH . F 5 HOH A 157 857 223 HOH HOH . F 5 HOH A 158 858 97 HOH HOH . F 5 HOH A 159 859 79 HOH HOH . F 5 HOH A 160 860 74 HOH HOH . F 5 HOH A 161 861 77 HOH HOH . F 5 HOH A 162 862 27 HOH HOH . F 5 HOH A 163 863 112 HOH HOH . F 5 HOH A 164 864 166 HOH HOH . F 5 HOH A 165 865 64 HOH HOH . F 5 HOH A 166 866 247 HOH HOH . F 5 HOH A 167 867 197 HOH HOH . F 5 HOH A 168 868 242 HOH HOH . F 5 HOH A 169 869 219 HOH HOH . F 5 HOH A 170 870 189 HOH HOH . F 5 HOH A 171 871 176 HOH HOH . F 5 HOH A 172 872 160 HOH HOH . F 5 HOH A 173 873 192 HOH HOH . F 5 HOH A 174 874 99 HOH HOH . F 5 HOH A 175 875 26 HOH HOH . F 5 HOH A 176 876 205 HOH HOH . F 5 HOH A 177 877 9 HOH HOH . F 5 HOH A 178 878 94 HOH HOH . F 5 HOH A 179 879 135 HOH HOH . F 5 HOH A 180 880 32 HOH HOH . F 5 HOH A 181 881 175 HOH HOH . F 5 HOH A 182 882 180 HOH HOH . F 5 HOH A 183 883 124 HOH HOH . F 5 HOH A 184 884 106 HOH HOH . F 5 HOH A 185 885 156 HOH HOH . F 5 HOH A 186 886 254 HOH HOH . F 5 HOH A 187 887 105 HOH HOH . F 5 HOH A 188 888 240 HOH HOH . F 5 HOH A 189 889 147 HOH HOH . F 5 HOH A 190 890 45 HOH HOH . F 5 HOH A 191 891 36 HOH HOH . F 5 HOH A 192 892 214 HOH HOH . F 5 HOH A 193 893 190 HOH HOH . F 5 HOH A 194 894 56 HOH HOH . F 5 HOH A 195 895 193 HOH HOH . F 5 HOH A 196 896 1 HOH HOH . F 5 HOH A 197 897 86 HOH HOH . F 5 HOH A 198 898 213 HOH HOH . F 5 HOH A 199 899 132 HOH HOH . F 5 HOH A 200 900 141 HOH HOH . F 5 HOH A 201 901 155 HOH HOH . F 5 HOH A 202 902 150 HOH HOH . F 5 HOH A 203 903 100 HOH HOH . F 5 HOH A 204 904 194 HOH HOH . F 5 HOH A 205 905 43 HOH HOH . F 5 HOH A 206 906 161 HOH HOH . F 5 HOH A 207 907 92 HOH HOH . F 5 HOH A 208 908 246 HOH HOH . F 5 HOH A 209 909 181 HOH HOH . F 5 HOH A 210 910 60 HOH HOH . F 5 HOH A 211 911 215 HOH HOH . F 5 HOH A 212 912 196 HOH HOH . F 5 HOH A 213 913 256 HOH HOH . F 5 HOH A 214 914 170 HOH HOH . F 5 HOH A 215 915 7 HOH HOH . F 5 HOH A 216 916 148 HOH HOH . F 5 HOH A 217 917 255 HOH HOH . F 5 HOH A 218 918 89 HOH HOH . F 5 HOH A 219 919 178 HOH HOH . F 5 HOH A 220 920 51 HOH HOH . F 5 HOH A 221 921 59 HOH HOH . F 5 HOH A 222 922 237 HOH HOH . F 5 HOH A 223 923 207 HOH HOH . F 5 HOH A 224 924 3 HOH HOH . F 5 HOH A 225 925 63 HOH HOH . F 5 HOH A 226 926 137 HOH HOH . F 5 HOH A 227 927 185 HOH HOH . F 5 HOH A 228 928 120 HOH HOH . F 5 HOH A 229 929 251 HOH HOH . F 5 HOH A 230 930 37 HOH HOH . F 5 HOH A 231 931 107 HOH HOH . F 5 HOH A 232 932 218 HOH HOH . F 5 HOH A 233 933 76 HOH HOH . F 5 HOH A 234 934 72 HOH HOH . F 5 HOH A 235 935 204 HOH HOH . F 5 HOH A 236 936 83 HOH HOH . F 5 HOH A 237 937 113 HOH HOH . F 5 HOH A 238 938 262 HOH HOH . F 5 HOH A 239 939 23 HOH HOH . F 5 HOH A 240 940 232 HOH HOH . F 5 HOH A 241 941 111 HOH HOH . F 5 HOH A 242 942 173 HOH HOH . F 5 HOH A 243 943 191 HOH HOH . F 5 HOH A 244 944 169 HOH HOH . F 5 HOH A 245 945 102 HOH HOH . F 5 HOH A 246 946 182 HOH HOH . F 5 HOH A 247 947 126 HOH HOH . F 5 HOH A 248 948 174 HOH HOH . F 5 HOH A 249 949 257 HOH HOH . F 5 HOH A 250 950 248 HOH HOH . F 5 HOH A 251 951 67 HOH HOH . F 5 HOH A 252 952 71 HOH HOH . F 5 HOH A 253 953 98 HOH HOH . F 5 HOH A 254 954 261 HOH HOH . F 5 HOH A 255 955 122 HOH HOH . F 5 HOH A 256 956 253 HOH HOH . F 5 HOH A 257 957 260 HOH HOH . F 5 HOH A 258 958 146 HOH HOH . F 5 HOH A 259 959 243 HOH HOH . F 5 HOH A 260 960 119 HOH HOH . F 5 HOH A 261 961 259 HOH HOH . F 5 HOH A 262 962 258 HOH HOH . F 5 HOH A 263 963 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -28.058 _atom_site.Cartn_y -29.828 _atom_site.Cartn_z -27.984 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.86 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 604 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #