data_8IUA # _model_server_result.job_id s01siN5wudIIqpsoPBKxwg _model_server_result.datetime_utc '2024-10-19 05:25:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8IUA # _exptl.entry_id 8IUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.64 _cell.angle_gamma 90 _cell.entry_id 8IUA _cell.length_a 153.712 _cell.length_b 47.996 _cell.length_c 76.477 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 602 GLC 2 n B GLC 2 B 2 GLC A 601 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O6 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? metalc ? metalc1 A OD2 ASP 113 A ASP 123 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 D NA NA . A NA 602 1_555 E O HOH . A HOH 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc3 D NA NA . A NA 602 1_555 E O HOH . A HOH 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8IUA _atom_sites.fract_transf_matrix[1][1] 0.006506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BGC A 1 601 603 BGC BGC . D 4 NA A 1 602 1 NA NA . E 5 HOH A 1 701 149 HOH HOH . E 5 HOH A 2 702 159 HOH HOH . E 5 HOH A 3 703 166 HOH HOH . E 5 HOH A 4 704 44 HOH HOH . E 5 HOH A 5 705 268 HOH HOH . E 5 HOH A 6 706 10 HOH HOH . E 5 HOH A 7 707 218 HOH HOH . E 5 HOH A 8 708 26 HOH HOH . E 5 HOH A 9 709 234 HOH HOH . E 5 HOH A 10 710 39 HOH HOH . E 5 HOH A 11 711 42 HOH HOH . E 5 HOH A 12 712 137 HOH HOH . E 5 HOH A 13 713 35 HOH HOH . E 5 HOH A 14 714 49 HOH HOH . E 5 HOH A 15 715 20 HOH HOH . E 5 HOH A 16 716 256 HOH HOH . E 5 HOH A 17 717 224 HOH HOH . E 5 HOH A 18 718 152 HOH HOH . E 5 HOH A 19 719 133 HOH HOH . E 5 HOH A 20 720 161 HOH HOH . E 5 HOH A 21 721 33 HOH HOH . E 5 HOH A 22 722 85 HOH HOH . E 5 HOH A 23 723 197 HOH HOH . E 5 HOH A 24 724 55 HOH HOH . E 5 HOH A 25 725 253 HOH HOH . E 5 HOH A 26 726 174 HOH HOH . E 5 HOH A 27 727 246 HOH HOH . E 5 HOH A 28 728 121 HOH HOH . E 5 HOH A 29 729 250 HOH HOH . E 5 HOH A 30 730 173 HOH HOH . E 5 HOH A 31 731 201 HOH HOH . E 5 HOH A 32 732 119 HOH HOH . E 5 HOH A 33 733 98 HOH HOH . E 5 HOH A 34 734 22 HOH HOH . E 5 HOH A 35 735 130 HOH HOH . E 5 HOH A 36 736 25 HOH HOH . E 5 HOH A 37 737 15 HOH HOH . E 5 HOH A 38 738 145 HOH HOH . E 5 HOH A 39 739 204 HOH HOH . E 5 HOH A 40 740 47 HOH HOH . E 5 HOH A 41 741 182 HOH HOH . E 5 HOH A 42 742 113 HOH HOH . E 5 HOH A 43 743 239 HOH HOH . E 5 HOH A 44 744 261 HOH HOH . E 5 HOH A 45 745 18 HOH HOH . E 5 HOH A 46 746 126 HOH HOH . E 5 HOH A 47 747 3 HOH HOH . E 5 HOH A 48 748 148 HOH HOH . E 5 HOH A 49 749 52 HOH HOH . E 5 HOH A 50 750 41 HOH HOH . E 5 HOH A 51 751 48 HOH HOH . E 5 HOH A 52 752 202 HOH HOH . E 5 HOH A 53 753 87 HOH HOH . E 5 HOH A 54 754 212 HOH HOH . E 5 HOH A 55 755 53 HOH HOH . E 5 HOH A 56 756 260 HOH HOH . E 5 HOH A 57 757 156 HOH HOH . E 5 HOH A 58 758 64 HOH HOH . E 5 HOH A 59 759 45 HOH HOH . E 5 HOH A 60 760 236 HOH HOH . E 5 HOH A 61 761 254 HOH HOH . E 5 HOH A 62 762 206 HOH HOH . E 5 HOH A 63 763 37 HOH HOH . E 5 HOH A 64 764 50 HOH HOH . E 5 HOH A 65 765 153 HOH HOH . E 5 HOH A 66 766 100 HOH HOH . E 5 HOH A 67 767 5 HOH HOH . E 5 HOH A 68 768 249 HOH HOH . E 5 HOH A 69 769 244 HOH HOH . E 5 HOH A 70 770 31 HOH HOH . E 5 HOH A 71 771 229 HOH HOH . E 5 HOH A 72 772 196 HOH HOH . E 5 HOH A 73 773 93 HOH HOH . E 5 HOH A 74 774 24 HOH HOH . E 5 HOH A 75 775 252 HOH HOH . E 5 HOH A 76 776 70 HOH HOH . E 5 HOH A 77 777 231 HOH HOH . E 5 HOH A 78 778 262 HOH HOH . E 5 HOH A 79 779 78 HOH HOH . E 5 HOH A 80 780 170 HOH HOH . E 5 HOH A 81 781 54 HOH HOH . E 5 HOH A 82 782 154 HOH HOH . E 5 HOH A 83 783 141 HOH HOH . E 5 HOH A 84 784 73 HOH HOH . E 5 HOH A 85 785 211 HOH HOH . E 5 HOH A 86 786 195 HOH HOH . E 5 HOH A 87 787 169 HOH HOH . E 5 HOH A 88 788 80 HOH HOH . E 5 HOH A 89 789 243 HOH HOH . E 5 HOH A 90 790 4 HOH HOH . E 5 HOH A 91 791 65 HOH HOH . E 5 HOH A 92 792 51 HOH HOH . E 5 HOH A 93 793 74 HOH HOH . E 5 HOH A 94 794 184 HOH HOH . E 5 HOH A 95 795 115 HOH HOH . E 5 HOH A 96 796 181 HOH HOH . E 5 HOH A 97 797 8 HOH HOH . E 5 HOH A 98 798 205 HOH HOH . E 5 HOH A 99 799 134 HOH HOH . E 5 HOH A 100 800 91 HOH HOH . E 5 HOH A 101 801 60 HOH HOH . E 5 HOH A 102 802 172 HOH HOH . E 5 HOH A 103 803 219 HOH HOH . E 5 HOH A 104 804 89 HOH HOH . E 5 HOH A 105 805 11 HOH HOH . E 5 HOH A 106 806 222 HOH HOH . E 5 HOH A 107 807 19 HOH HOH . E 5 HOH A 108 808 230 HOH HOH . E 5 HOH A 109 809 2 HOH HOH . E 5 HOH A 110 810 40 HOH HOH . E 5 HOH A 111 811 228 HOH HOH . E 5 HOH A 112 812 259 HOH HOH . E 5 HOH A 113 813 29 HOH HOH . E 5 HOH A 114 814 124 HOH HOH . E 5 HOH A 115 815 207 HOH HOH . E 5 HOH A 116 816 61 HOH HOH . E 5 HOH A 117 817 180 HOH HOH . E 5 HOH A 118 818 16 HOH HOH . E 5 HOH A 119 819 6 HOH HOH . E 5 HOH A 120 820 187 HOH HOH . E 5 HOH A 121 821 117 HOH HOH . E 5 HOH A 122 822 127 HOH HOH . E 5 HOH A 123 823 157 HOH HOH . E 5 HOH A 124 824 163 HOH HOH . E 5 HOH A 125 825 116 HOH HOH . E 5 HOH A 126 826 82 HOH HOH . E 5 HOH A 127 827 56 HOH HOH . E 5 HOH A 128 828 213 HOH HOH . E 5 HOH A 129 829 138 HOH HOH . E 5 HOH A 130 830 62 HOH HOH . E 5 HOH A 131 831 155 HOH HOH . E 5 HOH A 132 832 123 HOH HOH . E 5 HOH A 133 833 32 HOH HOH . E 5 HOH A 134 834 79 HOH HOH . E 5 HOH A 135 835 101 HOH HOH . E 5 HOH A 136 836 194 HOH HOH . E 5 HOH A 137 837 242 HOH HOH . E 5 HOH A 138 838 109 HOH HOH . E 5 HOH A 139 839 147 HOH HOH . E 5 HOH A 140 840 178 HOH HOH . E 5 HOH A 141 841 247 HOH HOH . E 5 HOH A 142 842 255 HOH HOH . E 5 HOH A 143 843 68 HOH HOH . E 5 HOH A 144 844 226 HOH HOH . E 5 HOH A 145 845 46 HOH HOH . E 5 HOH A 146 846 160 HOH HOH . E 5 HOH A 147 847 59 HOH HOH . E 5 HOH A 148 848 57 HOH HOH . E 5 HOH A 149 849 175 HOH HOH . E 5 HOH A 150 850 13 HOH HOH . E 5 HOH A 151 851 168 HOH HOH . E 5 HOH A 152 852 34 HOH HOH . E 5 HOH A 153 853 118 HOH HOH . E 5 HOH A 154 854 140 HOH HOH . E 5 HOH A 155 855 75 HOH HOH . E 5 HOH A 156 856 186 HOH HOH . E 5 HOH A 157 857 76 HOH HOH . E 5 HOH A 158 858 77 HOH HOH . E 5 HOH A 159 859 241 HOH HOH . E 5 HOH A 160 860 146 HOH HOH . E 5 HOH A 161 861 193 HOH HOH . E 5 HOH A 162 862 96 HOH HOH . E 5 HOH A 163 863 28 HOH HOH . E 5 HOH A 164 864 83 HOH HOH . E 5 HOH A 165 865 94 HOH HOH . E 5 HOH A 166 866 114 HOH HOH . E 5 HOH A 167 867 162 HOH HOH . E 5 HOH A 168 868 176 HOH HOH . E 5 HOH A 169 869 63 HOH HOH . E 5 HOH A 170 870 12 HOH HOH . E 5 HOH A 171 871 107 HOH HOH . E 5 HOH A 172 872 84 HOH HOH . E 5 HOH A 173 873 225 HOH HOH . E 5 HOH A 174 874 38 HOH HOH . E 5 HOH A 175 875 185 HOH HOH . E 5 HOH A 176 876 235 HOH HOH . E 5 HOH A 177 877 188 HOH HOH . E 5 HOH A 178 878 21 HOH HOH . E 5 HOH A 179 879 95 HOH HOH . E 5 HOH A 180 880 233 HOH HOH . E 5 HOH A 181 881 1 HOH HOH . E 5 HOH A 182 882 71 HOH HOH . E 5 HOH A 183 883 36 HOH HOH . E 5 HOH A 184 884 69 HOH HOH . E 5 HOH A 185 885 110 HOH HOH . E 5 HOH A 186 886 135 HOH HOH . E 5 HOH A 187 887 177 HOH HOH . E 5 HOH A 188 888 58 HOH HOH . E 5 HOH A 189 889 92 HOH HOH . E 5 HOH A 190 890 14 HOH HOH . E 5 HOH A 191 891 106 HOH HOH . E 5 HOH A 192 892 30 HOH HOH . E 5 HOH A 193 893 125 HOH HOH . E 5 HOH A 194 894 27 HOH HOH . E 5 HOH A 195 895 189 HOH HOH . E 5 HOH A 196 896 99 HOH HOH . E 5 HOH A 197 897 90 HOH HOH . E 5 HOH A 198 898 165 HOH HOH . E 5 HOH A 199 899 209 HOH HOH . E 5 HOH A 200 900 108 HOH HOH . E 5 HOH A 201 901 192 HOH HOH . E 5 HOH A 202 902 88 HOH HOH . E 5 HOH A 203 903 198 HOH HOH . E 5 HOH A 204 904 17 HOH HOH . E 5 HOH A 205 905 221 HOH HOH . E 5 HOH A 206 906 9 HOH HOH . E 5 HOH A 207 907 132 HOH HOH . E 5 HOH A 208 908 220 HOH HOH . E 5 HOH A 209 909 248 HOH HOH . E 5 HOH A 210 910 112 HOH HOH . E 5 HOH A 211 911 144 HOH HOH . E 5 HOH A 212 912 67 HOH HOH . E 5 HOH A 213 913 23 HOH HOH . E 5 HOH A 214 914 208 HOH HOH . E 5 HOH A 215 915 183 HOH HOH . E 5 HOH A 216 916 258 HOH HOH . E 5 HOH A 217 917 104 HOH HOH . E 5 HOH A 218 918 105 HOH HOH . E 5 HOH A 219 919 7 HOH HOH . E 5 HOH A 220 920 251 HOH HOH . E 5 HOH A 221 921 171 HOH HOH . E 5 HOH A 222 922 214 HOH HOH . E 5 HOH A 223 923 203 HOH HOH . E 5 HOH A 224 924 227 HOH HOH . E 5 HOH A 225 925 216 HOH HOH . E 5 HOH A 226 926 200 HOH HOH . E 5 HOH A 227 927 238 HOH HOH . E 5 HOH A 228 928 164 HOH HOH . E 5 HOH A 229 929 111 HOH HOH . E 5 HOH A 230 930 81 HOH HOH . E 5 HOH A 231 931 150 HOH HOH . E 5 HOH A 232 932 97 HOH HOH . E 5 HOH A 233 933 143 HOH HOH . E 5 HOH A 234 934 120 HOH HOH . E 5 HOH A 235 935 179 HOH HOH . E 5 HOH A 236 936 139 HOH HOH . E 5 HOH A 237 937 136 HOH HOH . E 5 HOH A 238 938 66 HOH HOH . E 5 HOH A 239 939 43 HOH HOH . E 5 HOH A 240 940 245 HOH HOH . E 5 HOH A 241 941 199 HOH HOH . E 5 HOH A 242 942 72 HOH HOH . E 5 HOH A 243 943 240 HOH HOH . E 5 HOH A 244 944 167 HOH HOH . E 5 HOH A 245 945 102 HOH HOH . E 5 HOH A 246 946 217 HOH HOH . E 5 HOH A 247 947 191 HOH HOH . E 5 HOH A 248 948 215 HOH HOH . E 5 HOH A 249 949 190 HOH HOH . E 5 HOH A 250 950 151 HOH HOH . E 5 HOH A 251 951 237 HOH HOH . E 5 HOH A 252 952 103 HOH HOH . E 5 HOH A 253 953 142 HOH HOH . E 5 HOH A 254 954 158 HOH HOH . E 5 HOH A 255 955 210 HOH HOH . E 5 HOH A 256 956 122 HOH HOH . E 5 HOH A 257 957 263 HOH HOH . E 5 HOH A 258 958 86 HOH HOH . E 5 HOH A 259 959 264 HOH HOH . E 5 HOH A 260 960 265 HOH HOH . E 5 HOH A 261 961 266 HOH HOH . E 5 HOH A 262 962 128 HOH HOH . E 5 HOH A 263 963 129 HOH HOH . E 5 HOH A 264 964 131 HOH HOH . E 5 HOH A 265 965 267 HOH HOH . E 5 HOH A 266 966 232 HOH HOH . E 5 HOH A 267 967 257 HOH HOH . E 5 HOH A 268 968 223 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -27.817 _atom_site.Cartn_y -29.558 _atom_site.Cartn_z -27.984 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.3 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 249 _model_server_stats.parse_time_ms 58 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #