data_8IUK # _model_server_result.job_id zfpyXRKojivT2SlLhGhrdg _model_server_result.datetime_utc '2024-12-26 10:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iuk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 8IUK # _exptl.entry_id 8IUK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 354.481 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(Z)-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 44 N CYS 22 1_555 E SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 E SG CYS 121 N CYS 99 1_555 E SG CYS 129 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 F SG CYS 108 R CYS 108 1_555 F SG CYS 186 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C20 H34 O5' _chem_comp.formula_weight 354.481 _chem_comp.id UGU _chem_comp.mon_nstd_flag . _chem_comp.name '(Z)-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Dinoprost;Prostaglandin F2a;PGF2alpha' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 UGU doub 356 n n C2 C1 UGU sing 357 n n C2 C3 UGU sing 358 n n C1 O2 UGU sing 359 n n C4 C3 UGU sing 360 n n C4 C5 UGU sing 361 n n C5 C6 UGU doub 362 z n C6 C7 UGU sing 363 n n C7 C8 UGU sing 364 n n O3 C9 UGU sing 365 n n C8 C9 UGU sing 366 n n C8 C12 UGU sing 367 n n C20 C19 UGU sing 368 n n C9 C10 UGU sing 369 n n C12 C13 UGU sing 370 n n C12 C11 UGU sing 371 n n C13 C14 UGU doub 372 e n C19 C18 UGU sing 373 n n C10 C11 UGU sing 374 n n C16 C15 UGU sing 375 n n C16 C17 UGU sing 376 n n C14 C15 UGU sing 377 n n C18 C17 UGU sing 378 n n C11 O4 UGU sing 379 n n C15 O5 UGU sing 380 n n C2 H1 UGU sing 381 n n C2 H2 UGU sing 382 n n C3 H3 UGU sing 383 n n C3 H4 UGU sing 384 n n C4 H5 UGU sing 385 n n C4 H6 UGU sing 386 n n C5 H7 UGU sing 387 n n C6 H8 UGU sing 388 n n C7 H9 UGU sing 389 n n C7 H10 UGU sing 390 n n C8 H11 UGU sing 391 n n C9 H12 UGU sing 392 n n O3 H13 UGU sing 393 n n C12 H14 UGU sing 394 n n C11 H15 UGU sing 395 n n O4 H16 UGU sing 396 n n C10 H17 UGU sing 397 n n C10 H18 UGU sing 398 n n C13 H19 UGU sing 399 n n C14 H21 UGU sing 400 n n C15 H23 UGU sing 401 n n O5 H24 UGU sing 402 n n C16 H25 UGU sing 403 n n C16 H26 UGU sing 404 n n C17 H27 UGU sing 405 n n C17 H28 UGU sing 406 n n C18 H29 UGU sing 407 n n C18 H30 UGU sing 408 n n C19 H31 UGU sing 409 n n C19 H32 UGU sing 410 n n C20 H33 UGU sing 411 n n C20 H34 UGU sing 412 n n C20 H35 UGU sing 413 n n O2 H36 UGU sing 414 n n # _atom_sites.entry_id 8IUK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 7 _pdbx_nonpoly_scheme.mon_id UGU _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id UGU _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UGU . . . G 7 116.382 96.321 76.205 1 20 ? C2 UGU 401 R 1 HETATM 2 C C3 UGU . . . G 7 115.992 97.183 77.402 1 20 ? C3 UGU 401 R 1 HETATM 3 C C4 UGU . . . G 7 114.652 97.894 77.225 1 20 ? C4 UGU 401 R 1 HETATM 4 C C5 UGU . . . G 7 114.754 99.329 77.728 1 20 ? C5 UGU 401 R 1 HETATM 5 C C6 UGU . . . G 7 114.02 99.776 78.724 1 20 ? C6 UGU 401 R 1 HETATM 6 C C7 UGU . . . G 7 113.006 98.85 79.383 1 20 ? C7 UGU 401 R 1 HETATM 7 C C8 UGU . . . G 7 112.94 98.687 80.892 1 20 ? C8 UGU 401 R 1 HETATM 8 C C9 UGU . . . G 7 112.063 97.323 81.261 1 20 ? C9 UGU 401 R 1 HETATM 9 O O3 UGU . . . G 7 111.924 96.492 80.152 1 20 ? O3 UGU 401 R 1 HETATM 10 C C12 UGU . . . G 7 114.138 98.556 81.494 1 20 ? C12 UGU 401 R 1 HETATM 11 C C11 UGU . . . G 7 113.743 97.734 82.798 1 20 ? C11 UGU 401 R 1 HETATM 12 O O4 UGU . . . G 7 114.858 96.987 83.151 1 20 ? O4 UGU 401 R 1 HETATM 13 C C10 UGU . . . G 7 112.62 96.711 82.336 1 20 ? C10 UGU 401 R 1 HETATM 14 C C13 UGU . . . G 7 114.432 99.922 82.053 1 20 ? C13 UGU 401 R 1 HETATM 15 C C14 UGU . . . G 7 113.416 100.476 82.649 1 20 ? C14 UGU 401 R 1 HETATM 16 C C15 UGU . . . G 7 113.677 101.821 83.25 1 20 ? C15 UGU 401 R 1 HETATM 17 O O5 UGU . . . G 7 114.27 101.455 84.473 1 20 ? O5 UGU 401 R 1 HETATM 18 C C16 UGU . . . G 7 114.717 102.61 82.461 1 20 ? C16 UGU 401 R 1 HETATM 19 C C17 UGU . . . G 7 115.278 103.781 83.264 1 20 ? C17 UGU 401 R 1 HETATM 20 C C18 UGU . . . G 7 114.843 105.13 82.695 1 20 ? C18 UGU 401 R 1 HETATM 21 C C19 UGU . . . G 7 116.03 105.945 82.185 1 20 ? C19 UGU 401 R 1 HETATM 22 C C20 UGU . . . G 7 115.692 106.78 80.95 1 20 ? C20 UGU 401 R 1 HETATM 23 O O1 UGU . . . G 7 118.568 95.478 75.586 1 20 ? O1 UGU 401 R 1 HETATM 24 C C1 UGU . . . G 7 117.677 95.56 76.477 1 20 ? C1 UGU 401 R 1 HETATM 25 O O2 UGU . . . G 7 117.856 95.024 77.602 1 20 ? O2 UGU 401 R 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #