data_8IUL # _model_server_result.job_id vBazN0RC3pv-EE1k0nLeSg _model_server_result.datetime_utc '2024-12-26 23:37:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8iul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8IUL # _exptl.entry_id 8IUL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 390.513 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Z-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(3R)-3-oxidanyl-5-phenyl-pentyl]cyclopentyl]hept-5-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 186 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 186 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H34 O5' _chem_comp.formula_weight 390.513 _chem_comp.id 7WT _chem_comp.mon_nstd_flag . _chem_comp.name 'Z-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(3R)-3-oxidanyl-5-phenyl-pentyl]cyclopentyl]hept-5-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7-[3,5-Dihydroxy-2-(3-hydroxy-5-phenylpentyl)cyclopentyl]hept-5-enoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C26 7WT doub 1 n n C26 O27 7WT sing 2 n n C26 C25 7WT sing 3 n n C25 C24 7WT sing 4 n n C24 C23 7WT sing 5 n n C23 C22 7WT sing 6 n n C22 C21 7WT doub 7 z n C21 C20 7WT sing 8 n n C17 C16 7WT doub 9 n y C17 C18 7WT sing 10 n y C16 C15 7WT sing 11 n y C20 C03 7WT sing 12 n n C18 C13 7WT doub 13 n y C15 C14 7WT doub 14 n y O01 C02 7WT sing 15 n n C13 C14 7WT sing 16 n y C13 C12 7WT sing 17 n n C03 C02 7WT sing 18 n n C03 C04 7WT sing 19 n n C02 C06 7WT sing 20 n n C12 C11 7WT sing 21 n n C11 C10 7WT sing 22 n n C04 C08 7WT sing 23 n n C04 C05 7WT sing 24 n n C08 C09 7WT sing 25 n n C06 C05 7WT sing 26 n n C05 O07 7WT sing 27 n n C10 C09 7WT sing 28 n n C10 O19 7WT sing 29 n n C10 H1 7WT sing 30 n n C15 H2 7WT sing 31 n n C17 H3 7WT sing 32 n n C20 H4 7WT sing 33 n n C20 H5 7WT sing 34 n n C21 H6 7WT sing 35 n n C22 H8 7WT sing 36 n n C24 H10 7WT sing 37 n n C24 H11 7WT sing 38 n n C02 H12 7WT sing 39 n n C03 H13 7WT sing 40 n n C04 H14 7WT sing 41 n n C05 H15 7WT sing 42 n n C06 H16 7WT sing 43 n n C06 H17 7WT sing 44 n n C08 H18 7WT sing 45 n n C08 H19 7WT sing 46 n n C09 H20 7WT sing 47 n n C09 H21 7WT sing 48 n n C11 H22 7WT sing 49 n n C11 H23 7WT sing 50 n n C12 H24 7WT sing 51 n n C12 H25 7WT sing 52 n n C14 H26 7WT sing 53 n n C16 H27 7WT sing 54 n n C18 H28 7WT sing 55 n n C23 H29 7WT sing 56 n n C23 H30 7WT sing 57 n n C25 H31 7WT sing 58 n n C25 H32 7WT sing 59 n n O01 H33 7WT sing 60 n n O07 H34 7WT sing 61 n n O19 H35 7WT sing 62 n n O27 H36 7WT sing 63 n n # _atom_sites.entry_id 8IUL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id 7WT _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id 7WT _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7WT . . . F 6 113.836 103.073 82.878 1 20 ? C10 7WT 401 R 1 HETATM 2 C C13 7WT . . . F 6 115.197 106.272 81.842 1 20 ? C13 7WT 401 R 1 HETATM 3 C C15 7WT . . . F 6 115.401 106.96 79.599 1 20 ? C15 7WT 401 R 1 HETATM 4 C C17 7WT . . . F 6 117.079 107.577 81.191 1 20 ? C17 7WT 401 R 1 HETATM 5 C C20 7WT . . . F 6 113.694 98.452 79.947 1 20 ? C20 7WT 401 R 1 HETATM 6 C C21 7WT . . . F 6 114.398 99.684 79.366 1 20 ? C21 7WT 401 R 1 HETATM 7 C C22 7WT . . . F 6 114.691 99.837 78.105 1 20 ? C22 7WT 401 R 1 HETATM 8 C C24 7WT . . . F 6 115.709 98.847 76.173 1 20 ? C24 7WT 401 R 1 HETATM 9 C C26 7WT . . . F 6 117.778 97.522 75.568 1 20 ? C26 7WT 401 R 1 HETATM 10 C C02 7WT . . . F 6 113.798 96.881 82.01 1 20 ? C02 7WT 401 R 1 HETATM 11 C C03 7WT . . . F 6 113.377 98.388 81.451 1 20 ? C03 7WT 401 R 1 HETATM 12 C C04 7WT . . . F 6 113.994 99.235 82.336 1 20 ? C04 7WT 401 R 1 HETATM 13 C C05 7WT . . . F 6 113.814 98.452 83.714 1 20 ? C05 7WT 401 R 1 HETATM 14 C C06 7WT . . . F 6 113.55 96.949 83.324 1 20 ? C06 7WT 401 R 1 HETATM 15 C C08 7WT . . . F 6 113.355 100.628 82.418 1 20 ? C08 7WT 401 R 1 HETATM 16 C C09 7WT . . . F 6 114.398 101.66 82.825 1 20 ? C09 7WT 401 R 1 HETATM 17 C C11 7WT . . . F 6 114.959 104.095 82.922 1 20 ? C11 7WT 401 R 1 HETATM 18 C C12 7WT . . . F 6 114.408 105.512 82.875 1 20 ? C12 7WT 401 R 1 HETATM 19 C C14 7WT . . . F 6 114.705 106.291 80.562 1 20 ? C14 7WT 401 R 1 HETATM 20 C C16 7WT . . . F 6 116.571 107.599 79.907 1 20 ? C16 7WT 401 R 1 HETATM 21 C C18 7WT . . . F 6 116.38 106.897 82.173 1 20 ? C18 7WT 401 R 1 HETATM 22 C C23 7WT . . . F 6 114.451 98.857 76.982 1 20 ? C23 7WT 401 R 1 HETATM 23 C C25 7WT . . . F 6 116.47 97.581 76.32 1 20 ? C25 7WT 401 R 1 HETATM 24 O O01 7WT . . . F 6 115.134 96.491 81.809 1 20 ? O01 7WT 401 R 1 HETATM 25 O O07 7WT . . . F 6 114.949 98.552 84.517 1 20 ? O07 7WT 401 R 1 HETATM 26 O O19 7WT . . . F 6 113.116 103.268 84.057 1 20 ? O19 7WT 401 R 1 HETATM 27 O O27 7WT . . . F 6 118.146 98.453 74.812 1 20 ? O27 7WT 401 R 1 HETATM 28 O O28 7WT . . . F 6 118.55 96.602 75.797 1 20 ? O28 7WT 401 R 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #