data_8IVF # _model_server_result.job_id aUo1UZi3JfE1BELuNmU6ew _model_server_result.datetime_utc '2024-12-01 05:38:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ivf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 8IVF # _exptl.entry_id 8IVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.653 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 25-HYDROXYCHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.34 _cell.angle_gamma 90 _cell.entry_id 8IVF _cell.length_a 34.7 _cell.length_b 54.11 _cell.length_c 67.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H46 O2' _chem_comp.formula_weight 402.653 _chem_comp.id HC3 _chem_comp.mon_nstd_flag . _chem_comp.name 25-HYDROXYCHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3BETA)-CHOLEST-5-ENE-3,25-DIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C13 HC3 sing 129 n n C18 H181 HC3 sing 130 n n C18 H182 HC3 sing 131 n n C18 H183 HC3 sing 132 n n C13 C12 HC3 sing 133 n n C13 C14 HC3 sing 134 n n C13 C17 HC3 sing 135 n n C12 C11 HC3 sing 136 n n C12 H121 HC3 sing 137 n n C12 H122 HC3 sing 138 n n C11 C9 HC3 sing 139 n n C11 H111 HC3 sing 140 n n C11 H112 HC3 sing 141 n n C9 C10 HC3 sing 142 n n C9 C8 HC3 sing 143 n n C9 H9 HC3 sing 144 n n C10 C19 HC3 sing 145 n n C10 C1 HC3 sing 146 n n C10 C5 HC3 sing 147 n n C19 H191 HC3 sing 148 n n C19 H192 HC3 sing 149 n n C19 H193 HC3 sing 150 n n C1 C2 HC3 sing 151 n n C1 H11 HC3 sing 152 n n C1 H12 HC3 sing 153 n n C2 C3 HC3 sing 154 n n C2 H21 HC3 sing 155 n n C2 H22 HC3 sing 156 n n C3 O1 HC3 sing 157 n n C3 C4 HC3 sing 158 n n C3 H3 HC3 sing 159 n n O1 HO1 HC3 sing 160 n n C4 C5 HC3 sing 161 n n C4 H41 HC3 sing 162 n n C4 H42 HC3 sing 163 n n C5 C6 HC3 doub 164 n n C6 C7 HC3 sing 165 n n C6 H6 HC3 sing 166 n n C7 C8 HC3 sing 167 n n C7 H71 HC3 sing 168 n n C7 H72 HC3 sing 169 n n C8 C14 HC3 sing 170 n n C8 H8 HC3 sing 171 n n C14 C15 HC3 sing 172 n n C14 H14 HC3 sing 173 n n C15 C16 HC3 sing 174 n n C15 H151 HC3 sing 175 n n C15 H152 HC3 sing 176 n n C16 C17 HC3 sing 177 n n C16 H161 HC3 sing 178 n n C16 H162 HC3 sing 179 n n C17 C20 HC3 sing 180 n n C17 H17 HC3 sing 181 n n C20 C21 HC3 sing 182 n n C20 C22 HC3 sing 183 n n C20 H20 HC3 sing 184 n n C21 H211 HC3 sing 185 n n C21 H212 HC3 sing 186 n n C21 H213 HC3 sing 187 n n C22 C23 HC3 sing 188 n n C22 H221 HC3 sing 189 n n C22 H222 HC3 sing 190 n n C23 C24 HC3 sing 191 n n C23 H231 HC3 sing 192 n n C23 H232 HC3 sing 193 n n C24 C25 HC3 sing 194 n n C24 H241 HC3 sing 195 n n C24 H242 HC3 sing 196 n n C25 C26 HC3 sing 197 n n C25 C27 HC3 sing 198 n n C25 O2 HC3 sing 199 n n C26 H261 HC3 sing 200 n n C26 H262 HC3 sing 201 n n C26 H263 HC3 sing 202 n n C27 H271 HC3 sing 203 n n C27 H272 HC3 sing 204 n n C27 H273 HC3 sing 205 n n O2 HO2 HC3 sing 206 n n # _atom_sites.entry_id 8IVF _atom_sites.fract_transf_matrix[1][1] 0.028819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HC3 B 1 1001 1001 HC3 HC3 . D 2 HC3 A 1 1001 1001 HC3 HC3 . E 3 HOH B 1 1101 18 HOH HOH . E 3 HOH B 2 1102 74 HOH HOH . E 3 HOH B 3 1103 64 HOH HOH . E 3 HOH B 4 1104 56 HOH HOH . E 3 HOH B 5 1105 48 HOH HOH . E 3 HOH B 6 1106 88 HOH HOH . E 3 HOH B 7 1107 42 HOH HOH . E 3 HOH B 8 1108 9 HOH HOH . E 3 HOH B 9 1109 3 HOH HOH . E 3 HOH B 10 1110 20 HOH HOH . E 3 HOH B 11 1111 103 HOH HOH . E 3 HOH B 12 1112 14 HOH HOH . E 3 HOH B 13 1113 13 HOH HOH . E 3 HOH B 14 1114 93 HOH HOH . E 3 HOH B 15 1115 15 HOH HOH . E 3 HOH B 16 1116 30 HOH HOH . E 3 HOH B 17 1117 57 HOH HOH . E 3 HOH B 18 1118 54 HOH HOH . E 3 HOH B 19 1119 17 HOH HOH . E 3 HOH B 20 1120 71 HOH HOH . E 3 HOH B 21 1121 49 HOH HOH . E 3 HOH B 22 1122 28 HOH HOH . E 3 HOH B 23 1123 5 HOH HOH . E 3 HOH B 24 1124 21 HOH HOH . E 3 HOH B 25 1125 94 HOH HOH . E 3 HOH B 26 1126 47 HOH HOH . E 3 HOH B 27 1127 80 HOH HOH . E 3 HOH B 28 1128 95 HOH HOH . E 3 HOH B 29 1129 72 HOH HOH . E 3 HOH B 30 1130 34 HOH HOH . E 3 HOH B 31 1131 70 HOH HOH . E 3 HOH B 32 1132 37 HOH HOH . E 3 HOH B 33 1133 36 HOH HOH . E 3 HOH B 34 1134 41 HOH HOH . E 3 HOH B 35 1135 6 HOH HOH . E 3 HOH B 36 1136 58 HOH HOH . E 3 HOH B 37 1137 85 HOH HOH . E 3 HOH B 38 1138 77 HOH HOH . E 3 HOH B 39 1139 25 HOH HOH . E 3 HOH B 40 1140 89 HOH HOH . E 3 HOH B 41 1141 45 HOH HOH . E 3 HOH B 42 1142 101 HOH HOH . E 3 HOH B 43 1143 53 HOH HOH . E 3 HOH B 44 1144 104 HOH HOH . E 3 HOH B 45 1145 43 HOH HOH . E 3 HOH B 46 1146 22 HOH HOH . E 3 HOH B 47 1147 106 HOH HOH . E 3 HOH B 48 1148 52 HOH HOH . E 3 HOH B 49 1149 90 HOH HOH . E 3 HOH B 50 1150 92 HOH HOH . E 3 HOH B 51 1151 97 HOH HOH . F 3 HOH A 1 1101 65 HOH HOH . F 3 HOH A 2 1102 100 HOH HOH . F 3 HOH A 3 1103 51 HOH HOH . F 3 HOH A 4 1104 39 HOH HOH . F 3 HOH A 5 1105 96 HOH HOH . F 3 HOH A 6 1106 38 HOH HOH . F 3 HOH A 7 1107 98 HOH HOH . F 3 HOH A 8 1108 19 HOH HOH . F 3 HOH A 9 1109 86 HOH HOH . F 3 HOH A 10 1110 4 HOH HOH . F 3 HOH A 11 1111 26 HOH HOH . F 3 HOH A 12 1112 12 HOH HOH . F 3 HOH A 13 1113 2 HOH HOH . F 3 HOH A 14 1114 23 HOH HOH . F 3 HOH A 15 1115 7 HOH HOH . F 3 HOH A 16 1116 44 HOH HOH . F 3 HOH A 17 1117 31 HOH HOH . F 3 HOH A 18 1118 16 HOH HOH . F 3 HOH A 19 1119 24 HOH HOH . F 3 HOH A 20 1120 66 HOH HOH . F 3 HOH A 21 1121 102 HOH HOH . F 3 HOH A 22 1122 1 HOH HOH . F 3 HOH A 23 1123 32 HOH HOH . F 3 HOH A 24 1124 27 HOH HOH . F 3 HOH A 25 1125 63 HOH HOH . F 3 HOH A 26 1126 76 HOH HOH . F 3 HOH A 27 1127 73 HOH HOH . F 3 HOH A 28 1128 69 HOH HOH . F 3 HOH A 29 1129 46 HOH HOH . F 3 HOH A 30 1130 35 HOH HOH . F 3 HOH A 31 1131 79 HOH HOH . F 3 HOH A 32 1132 62 HOH HOH . F 3 HOH A 33 1133 81 HOH HOH . F 3 HOH A 34 1134 68 HOH HOH . F 3 HOH A 35 1135 8 HOH HOH . F 3 HOH A 36 1136 11 HOH HOH . F 3 HOH A 37 1137 83 HOH HOH . F 3 HOH A 38 1138 87 HOH HOH . F 3 HOH A 39 1139 33 HOH HOH . F 3 HOH A 40 1140 55 HOH HOH . F 3 HOH A 41 1141 99 HOH HOH . F 3 HOH A 42 1142 29 HOH HOH . F 3 HOH A 43 1143 59 HOH HOH . F 3 HOH A 44 1144 82 HOH HOH . F 3 HOH A 45 1145 78 HOH HOH . F 3 HOH A 46 1146 10 HOH HOH . F 3 HOH A 47 1147 91 HOH HOH . F 3 HOH A 48 1148 105 HOH HOH . F 3 HOH A 49 1149 40 HOH HOH . F 3 HOH A 50 1150 67 HOH HOH . F 3 HOH A 51 1151 61 HOH HOH . F 3 HOH A 52 1152 50 HOH HOH . F 3 HOH A 53 1153 75 HOH HOH . F 3 HOH A 54 1154 84 HOH HOH . F 3 HOH A 55 1155 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 HC3 . . . D 2 -16.053 -16.907 -27.754 0.5 17.55 ? C18 HC3 1001 A 1 HETATM 2 C C13 HC3 . . . D 2 -17.592 -17.269 -27.695 0.5 18.88 ? C13 HC3 1001 A 1 HETATM 3 C C12 HC3 . . . D 2 -18.274 -16.651 -26.491 0.5 20.11 ? C12 HC3 1001 A 1 HETATM 4 C C11 HC3 . . . D 2 -17.427 -16.926 -25.259 0.5 18.6 ? C11 HC3 1001 A 1 HETATM 5 C C9 HC3 . . . D 2 -17.176 -18.426 -25.121 1 18.52 ? C9 HC3 1001 A 1 HETATM 6 C C10 HC3 . . . D 2 -15.937 -18.677 -24.246 1 18.21 ? C10 HC3 1001 A 1 HETATM 7 C C19 HC3 . . . D 2 -14.671 -18.115 -24.831 1 16.94 ? C19 HC3 1001 A 1 HETATM 8 C C1 HC3 . . . D 2 -16.234 -18.035 -22.917 1 17.76 ? C1 HC3 1001 A 1 HETATM 9 C C2 HC3 . . . D 2 -15.465 -18.581 -21.74 1 17.37 ? C2 HC3 1001 A 1 HETATM 10 C C3 HC3 . . . D 2 -14.77 -19.865 -21.931 1 17.2 ? C3 HC3 1001 A 1 HETATM 11 O O1 HC3 . . . D 2 -13.364 -19.541 -21.977 1 18.08 ? O1 HC3 1001 A 1 HETATM 12 C C4 HC3 . . . D 2 -15.595 -20.806 -22.761 1 18.13 ? C4 HC3 1001 A 1 HETATM 13 C C5 HC3 . . . D 2 -15.694 -20.141 -24.115 0.5 18.37 ? C5 HC3 1001 A 1 HETATM 14 C C6 HC3 . . . D 2 -15.595 -20.772 -25.292 1 18.62 ? C6 HC3 1001 A 1 HETATM 15 C C7 HC3 . . . D 2 -16.835 -20.654 -26.137 1 17.99 ? C7 HC3 1001 A 1 HETATM 16 C C8 HC3 . . . D 2 -17.034 -19.223 -26.445 1 18.13 ? C8 HC3 1001 A 1 HETATM 17 C C14 HC3 . . . D 2 -17.942 -18.76 -27.563 1 18.02 ? C14 HC3 1001 A 1 HETATM 18 C C15 HC3 . . . D 2 -17.862 -19.244 -28.985 1 17.7 ? C15 HC3 1001 A 1 HETATM 19 C C16 HC3 . . . D 2 -18.123 -18.022 -29.857 1 18.01 ? C16 HC3 1001 A 1 HETATM 20 C C17 HC3 . . . D 2 -18.279 -16.796 -28.953 1 17.32 ? C17 HC3 1001 A 1 HETATM 21 C C20 HC3 . . . D 2 -17.822 -15.385 -29.35 1 17.94 ? C20 HC3 1001 A 1 HETATM 22 C C21 HC3 . . . D 2 -16.582 -15.43 -30.139 1 17.54 ? C21 HC3 1001 A 1 HETATM 23 C C22 HC3 . . . D 2 -17.55 -14.457 -28.169 1 17.52 ? C22 HC3 1001 A 1 HETATM 24 C C23 HC3 . . . D 2 -16.291 -13.601 -27.891 1 18.06 ? C23 HC3 1001 A 1 HETATM 25 C C24 HC3 . . . D 2 -15.125 -14.276 -27.163 1 17.16 ? C24 HC3 1001 A 1 HETATM 26 C C25 HC3 . . . D 2 -14.696 -14.104 -25.703 1 16.96 ? C25 HC3 1001 A 1 HETATM 27 C C26 HC3 . . . D 2 -13.886 -15.325 -25.486 1 16.48 ? C26 HC3 1001 A 1 HETATM 28 C C27 HC3 . . . D 2 -13.81 -12.931 -25.388 1 16.27 ? C27 HC3 1001 A 1 HETATM 29 O O2 HC3 . . . D 2 -15.629 -14.187 -24.645 1 16.58 ? O2 HC3 1001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #