data_8IX1 # _model_server_result.job_id wV1sNDakU9IVZyE9KZo7cg _model_server_result.datetime_utc '2025-09-06 09:51:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ix1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":317}' # _entry.id 8IX1 # _exptl.entry_id 8IX1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 568.871 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IX1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 R N N ? 4 LA N N ? 4 MA N N ? 4 EB N N ? 4 FB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 52 G GLU 65 1_555 E MG CLA . G CLA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A O HIS 107 G HIS 120 1_555 H MG CHL . G CHL 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc3 A OE2 GLU 126 G GLU 139 1_555 K MG CHL . G CHL 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc4 A OE2 GLU 167 G GLU 180 1_555 L MG CLA . G CLA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc5 B OE1 GLU 52 N GLU 65 1_555 Y MG CLA . N CLA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc6 B OD1 ASN 170 N ASN 183 1_555 IA MG CLA . N CLA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc7 HA MG CLA . N CLA 312 1_555 PA O4 LHG . N LHG 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc8 C OE1 GLU 52 Y GLU 65 1_555 SA MG CLA . Y CLA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 C OE2 GLU 126 Y GLU 139 1_555 YA MG CHL . Y CHL 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc10 AB MG CLA . Y CLA 610 1_555 HB O4 LHG . Y LHG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C40 H56 O2' _chem_comp.formula_weight 568.871 _chem_comp.id LUT _chem_comp.mon_nstd_flag . _chem_comp.name "(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(3R,3'R)-BETA,BETA-CAROTENE-3,3'-DIOL;LUTEIN" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LUT sing 604 n n C1 C6 LUT sing 605 n n C1 C16 LUT sing 606 n n C1 C17 LUT sing 607 n n C2 C3 LUT sing 608 n n C2 H21 LUT sing 609 n n C2 H22 LUT sing 610 n n C3 C4 LUT sing 611 n n C3 O3 LUT sing 612 n n C3 H3 LUT sing 613 n n C4 C5 LUT sing 614 n n C4 H41 LUT sing 615 n n C4 H42 LUT sing 616 n n C5 C6 LUT doub 617 n n C5 C18 LUT sing 618 n n C6 C7 LUT sing 619 n n C7 C8 LUT doub 620 e n C7 H7 LUT sing 621 n n C8 C9 LUT sing 622 n n C8 H8 LUT sing 623 n n C9 C10 LUT doub 624 e n C9 C19 LUT sing 625 n n C10 C11 LUT sing 626 n n C10 H10 LUT sing 627 n n C11 C12 LUT doub 628 e n C11 H11 LUT sing 629 n n C12 C13 LUT sing 630 n n C12 H12 LUT sing 631 n n C13 C14 LUT doub 632 e n C13 C20 LUT sing 633 n n C14 C15 LUT sing 634 n n C14 H14 LUT sing 635 n n C15 C35 LUT doub 636 e n C15 H15 LUT sing 637 n n C16 H161 LUT sing 638 n n C16 H162 LUT sing 639 n n C16 H163 LUT sing 640 n n C17 H171 LUT sing 641 n n C17 H172 LUT sing 642 n n C17 H173 LUT sing 643 n n C18 H181 LUT sing 644 n n C18 H182 LUT sing 645 n n C18 H183 LUT sing 646 n n C19 H191 LUT sing 647 n n C19 H192 LUT sing 648 n n C19 H193 LUT sing 649 n n C20 H201 LUT sing 650 n n C20 H202 LUT sing 651 n n C20 H203 LUT sing 652 n n O3 HO3 LUT sing 653 n n C21 C22 LUT sing 654 n n C21 C26 LUT sing 655 n n C21 C36 LUT sing 656 n n C21 C37 LUT sing 657 n n C22 C23 LUT sing 658 n n C22 H221 LUT sing 659 n n C22 H222 LUT sing 660 n n C23 C24 LUT sing 661 n n C23 O23 LUT sing 662 n n C23 H23 LUT sing 663 n n C24 C25 LUT doub 664 n n C24 H24 LUT sing 665 n n C25 C26 LUT sing 666 n n C25 C38 LUT sing 667 n n C26 C27 LUT sing 668 n n C26 H26 LUT sing 669 n n C27 C28 LUT doub 670 e n C27 H27 LUT sing 671 n n C28 C29 LUT sing 672 n n C28 H28 LUT sing 673 n n C29 C30 LUT doub 674 e n C29 C39 LUT sing 675 n n C30 C31 LUT sing 676 n n C30 H30 LUT sing 677 n n C31 C32 LUT doub 678 e n C31 H31 LUT sing 679 n n C32 C33 LUT sing 680 n n C32 H32 LUT sing 681 n n C33 C34 LUT doub 682 e n C33 C40 LUT sing 683 n n C34 C35 LUT sing 684 n n C34 H34 LUT sing 685 n n C35 H35 LUT sing 686 n n C36 H361 LUT sing 687 n n C36 H362 LUT sing 688 n n C36 H363 LUT sing 689 n n C37 H371 LUT sing 690 n n C37 H372 LUT sing 691 n n C37 H373 LUT sing 692 n n C38 H381 LUT sing 693 n n C38 H382 LUT sing 694 n n C38 H383 LUT sing 695 n n C39 H391 LUT sing 696 n n C39 H392 LUT sing 697 n n C39 H393 LUT sing 698 n n C40 H401 LUT sing 699 n n C40 H402 LUT sing 700 n n C40 H403 LUT sing 701 n n O23 H1 LUT sing 702 n n # _atom_sites.entry_id 8IX1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CHL G 1 601 601 CHL CHL . E 3 CLA G 1 602 602 CLA CLA . F 3 CLA G 1 603 603 CLA CLA . G 3 CLA G 1 604 604 CLA CLA . H 2 CHL G 1 605 605 CHL CHL . I 2 CHL G 1 606 606 CHL CHL . J 2 CHL G 1 607 608 CHL CHL . K 2 CHL G 1 608 609 CHL CHL . L 3 CLA G 1 609 610 CLA CLA . M 3 CLA G 1 610 611 CLA CLA . N 3 CLA G 1 611 612 CLA CLA . O 3 CLA G 1 612 613 CLA CLA . P 3 CLA G 1 613 614 CLA CLA . Q 4 LUT G 1 614 1620 LUT LUT . R 4 LUT G 1 615 1621 LUT LUT . S 5 XAT G 1 616 1622 XAT XAT . T 6 NEX G 1 617 1623 NEX NEX . U 7 LHG G 1 618 2630 LHG LHG . V 2 CHL G 1 619 607 CHL CHL . W 2 CHL N 1 301 607 CHL CHL . X 2 CHL N 1 302 601 CHL CHL . Y 3 CLA N 1 303 602 CLA CLA . Z 3 CLA N 1 304 603 CLA CLA . AA 3 CLA N 1 305 604 CLA CLA . BA 2 CHL N 1 306 605 CHL CHL . CA 2 CHL N 1 307 606 CHL CHL . DA 2 CHL N 1 308 607 CHL CHL . EA 2 CHL N 1 309 608 CHL CHL . FA 2 CHL N 1 310 609 CHL CHL . GA 3 CLA N 1 311 610 CLA CLA . HA 3 CLA N 1 312 611 CLA CLA . IA 3 CLA N 1 313 612 CLA CLA . JA 3 CLA N 1 314 613 CLA CLA . KA 3 CLA N 1 315 614 CLA CLA . LA 4 LUT N 1 316 1620 LUT LUT . MA 4 LUT N 1 317 1621 LUT LUT . NA 5 XAT N 1 318 1622 XAT XAT . OA 6 NEX N 1 319 1623 NEX NEX . PA 7 LHG N 1 320 2630 LHG LHG . QA 5 XAT N 1 321 1622 XAT XAT . RA 2 CHL Y 1 601 601 CHL CHL . SA 3 CLA Y 1 602 602 CLA CLA . TA 3 CLA Y 1 603 603 CLA CLA . UA 3 CLA Y 1 604 604 CLA CLA . VA 2 CHL Y 1 605 605 CHL CHL . WA 2 CHL Y 1 606 606 CHL CHL . XA 2 CHL Y 1 607 608 CHL CHL . YA 2 CHL Y 1 608 609 CHL CHL . ZA 3 CLA Y 1 609 610 CLA CLA . AB 3 CLA Y 1 610 611 CLA CLA . BB 3 CLA Y 1 611 612 CLA CLA . CB 3 CLA Y 1 612 613 CLA CLA . DB 3 CLA Y 1 613 614 CLA CLA . EB 4 LUT Y 1 614 1620 LUT LUT . FB 4 LUT Y 1 615 1621 LUT LUT . GB 6 NEX Y 1 616 1623 NEX NEX . HB 7 LHG Y 1 617 2630 LHG LHG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LUT . . . MA 4 103.865 116.249 95.287 1 23.94 ? C1 LUT 317 N 1 HETATM 2 C C2 LUT . . . MA 4 102.567 116.255 94.487 1 22.22 ? C2 LUT 317 N 1 HETATM 3 C C3 LUT . . . MA 4 102.451 117.284 93.369 1 23.48 ? C3 LUT 317 N 1 HETATM 4 C C4 LUT . . . MA 4 103.222 118.556 93.658 1 20.06 ? C4 LUT 317 N 1 HETATM 5 C C5 LUT . . . MA 4 104.643 118.161 93.922 1 22.95 ? C5 LUT 317 N 1 HETATM 6 C C6 LUT . . . MA 4 104.956 117.138 94.72 1 23.18 ? C6 LUT 317 N 1 HETATM 7 C C7 LUT . . . MA 4 106.366 116.834 95.081 1 21.58 ? C7 LUT 317 N 1 HETATM 8 C C8 LUT . . . MA 4 106.972 117.438 96.104 1 22.46 ? C8 LUT 317 N 1 HETATM 9 C C9 LUT . . . MA 4 108.358 117.146 96.512 1 24.71 ? C9 LUT 317 N 1 HETATM 10 C C10 LUT . . . MA 4 108.796 117.753 97.619 1 19.54 ? C10 LUT 317 N 1 HETATM 11 C C11 LUT . . . MA 4 110.11 117.595 98.227 1 22.61 ? C11 LUT 317 N 1 HETATM 12 C C12 LUT . . . MA 4 110.222 118.128 99.441 1 21.64 ? C12 LUT 317 N 1 HETATM 13 C C13 LUT . . . MA 4 111.444 118.048 100.255 1 23.58 ? C13 LUT 317 N 1 HETATM 14 C C14 LUT . . . MA 4 111.396 118.516 101.511 1 24.5 ? C14 LUT 317 N 1 HETATM 15 C C15 LUT . . . MA 4 112.61 118.325 102.349 1 20.58 ? C15 LUT 317 N 1 HETATM 16 C C16 LUT . . . MA 4 104.362 114.83 95.253 1 22.93 ? C16 LUT 317 N 1 HETATM 17 C C17 LUT . . . MA 4 103.605 116.525 96.756 1 21.34 ? C17 LUT 317 N 1 HETATM 18 C C18 LUT . . . MA 4 105.669 118.951 93.192 1 19.38 ? C18 LUT 317 N 1 HETATM 19 C C19 LUT . . . MA 4 109.227 116.21 95.725 1 20.3 ? C19 LUT 317 N 1 HETATM 20 C C20 LUT . . . MA 4 112.695 117.435 99.704 1 23.19 ? C20 LUT 317 N 1 HETATM 21 O O3 LUT . . . MA 4 101.083 117.585 93.103 1 28 ? O3 LUT 317 N 1 HETATM 22 C C21 LUT . . . MA 4 119.597 119.34 112.977 1 24.69 ? C21 LUT 317 N 1 HETATM 23 C C22 LUT . . . MA 4 120.92 119.2 113.719 1 24.7 ? C22 LUT 317 N 1 HETATM 24 C C23 LUT . . . MA 4 121.667 120.522 113.842 1 23.26 ? C23 LUT 317 N 1 HETATM 25 C C24 LUT . . . MA 4 121.772 121.189 112.491 1 19.9 ? C24 LUT 317 N 1 HETATM 26 C C25 LUT . . . MA 4 120.936 120.902 111.478 1 24.94 ? C25 LUT 317 N 1 HETATM 27 C C26 LUT . . . MA 4 119.868 119.835 111.549 1 21.14 ? C26 LUT 317 N 1 HETATM 28 C C27 LUT . . . MA 4 118.6 120.402 110.942 1 22.19 ? C27 LUT 317 N 1 HETATM 29 C C28 LUT . . . MA 4 117.947 119.707 110.016 1 21.89 ? C28 LUT 317 N 1 HETATM 30 C C29 LUT . . . MA 4 116.708 120.205 109.394 1 21.11 ? C29 LUT 317 N 1 HETATM 31 C C30 LUT . . . MA 4 116.067 119.396 108.545 1 23.92 ? C30 LUT 317 N 1 HETATM 32 C C31 LUT . . . MA 4 114.834 119.768 107.862 1 22.35 ? C31 LUT 317 N 1 HETATM 33 C C32 LUT . . . MA 4 114.641 119.163 106.699 1 21.88 ? C32 LUT 317 N 1 HETATM 34 C C33 LUT . . . MA 4 113.488 119.354 105.805 1 20.16 ? C33 LUT 317 N 1 HETATM 35 C C34 LUT . . . MA 4 113.565 118.861 104.559 1 24.65 ? C34 LUT 317 N 1 HETATM 36 C C35 LUT . . . MA 4 112.456 118.976 103.621 1 20.97 ? C35 LUT 317 N 1 HETATM 37 C C36 LUT . . . MA 4 118.647 120.248 113.761 1 22.05 ? C36 LUT 317 N 1 HETATM 38 C C37 LUT . . . MA 4 118.979 117.946 112.928 1 23.28 ? C37 LUT 317 N 1 HETATM 39 C C38 LUT . . . MA 4 121.08 121.686 110.209 1 20.92 ? C38 LUT 317 N 1 HETATM 40 C C39 LUT . . . MA 4 116.191 121.579 109.698 1 23.44 ? C39 LUT 317 N 1 HETATM 41 C C40 LUT . . . MA 4 112.268 120.078 106.278 1 22.94 ? C40 LUT 317 N 1 HETATM 42 O O23 LUT . . . MA 4 122.987 120.266 114.332 1 25.9 ? O23 LUT 317 N 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #