data_8IX1 # _model_server_result.job_id '_lR8OfUGRxFWj9bbKRhnDw' _model_server_result.datetime_utc '2025-09-08 08:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ix1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":318}' # _entry.id 8IX1 # _exptl.entry_id 8IX1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 600.87 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IX1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 S N N ? 5 NA N N ? 5 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 52 G GLU 65 1_555 E MG CLA . G CLA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A O HIS 107 G HIS 120 1_555 H MG CHL . G CHL 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc3 A OE2 GLU 126 G GLU 139 1_555 K MG CHL . G CHL 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc4 A OE2 GLU 167 G GLU 180 1_555 L MG CLA . G CLA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc5 B OE1 GLU 52 N GLU 65 1_555 Y MG CLA . N CLA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc6 B OD1 ASN 170 N ASN 183 1_555 IA MG CLA . N CLA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc7 HA MG CLA . N CLA 312 1_555 PA O4 LHG . N LHG 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc8 C OE1 GLU 52 Y GLU 65 1_555 SA MG CLA . Y CLA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 C OE2 GLU 126 Y GLU 139 1_555 YA MG CHL . Y CHL 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc10 AB MG CLA . Y CLA 610 1_555 HB O4 LHG . Y LHG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C40 H56 O4' _chem_comp.formula_weight 600.87 _chem_comp.id XAT _chem_comp.mon_nstd_flag . _chem_comp.name "(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms VIOLAXANTHIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XAT sing 987 n n C1 C6 XAT sing 988 n n C1 C16 XAT sing 989 n n C1 C17 XAT sing 990 n n C2 C3 XAT sing 991 n n C2 H21 XAT sing 992 n n C2 H22 XAT sing 993 n n C3 C4 XAT sing 994 n n C3 O3 XAT sing 995 n n C3 H3 XAT sing 996 n n C4 C5 XAT sing 997 n n C4 H41 XAT sing 998 n n C4 H42 XAT sing 999 n n C5 C6 XAT sing 1000 n n C5 C18 XAT sing 1001 n n C5 O4 XAT sing 1002 n n C6 C7 XAT sing 1003 n n C6 O4 XAT sing 1004 n n C7 C8 XAT doub 1005 e n C7 H7 XAT sing 1006 n n C8 C9 XAT sing 1007 n n C8 H8 XAT sing 1008 n n C9 C10 XAT doub 1009 e n C9 C19 XAT sing 1010 n n C10 C11 XAT sing 1011 n n C10 H10 XAT sing 1012 n n C11 C12 XAT doub 1013 e n C11 H11 XAT sing 1014 n n C12 C13 XAT sing 1015 n n C12 H12 XAT sing 1016 n n C13 C14 XAT doub 1017 e n C13 C20 XAT sing 1018 n n C14 C15 XAT sing 1019 n n C14 H14 XAT sing 1020 n n C15 C35 XAT doub 1021 e n C15 H15 XAT sing 1022 n n C16 H161 XAT sing 1023 n n C16 H162 XAT sing 1024 n n C16 H163 XAT sing 1025 n n C17 H171 XAT sing 1026 n n C17 H172 XAT sing 1027 n n C17 H173 XAT sing 1028 n n C18 H181 XAT sing 1029 n n C18 H182 XAT sing 1030 n n C18 H183 XAT sing 1031 n n C19 H191 XAT sing 1032 n n C19 H192 XAT sing 1033 n n C19 H193 XAT sing 1034 n n C20 H201 XAT sing 1035 n n C20 H202 XAT sing 1036 n n C20 H203 XAT sing 1037 n n O3 HO3 XAT sing 1038 n n C21 C22 XAT sing 1039 n n C21 C26 XAT sing 1040 n n C21 C36 XAT sing 1041 n n C21 C37 XAT sing 1042 n n C22 C23 XAT sing 1043 n n C22 H221 XAT sing 1044 n n C22 H222 XAT sing 1045 n n C23 C24 XAT sing 1046 n n C23 O23 XAT sing 1047 n n C23 H23 XAT sing 1048 n n C24 C25 XAT sing 1049 n n C24 H241 XAT sing 1050 n n C24 H242 XAT sing 1051 n n C25 C26 XAT sing 1052 n n C25 C38 XAT sing 1053 n n C25 O24 XAT sing 1054 n n C26 C27 XAT sing 1055 n n C26 O24 XAT sing 1056 n n C27 C28 XAT doub 1057 e n C27 H27 XAT sing 1058 n n C28 C29 XAT sing 1059 n n C28 H28 XAT sing 1060 n n C29 C30 XAT doub 1061 e n C29 C39 XAT sing 1062 n n C30 C31 XAT sing 1063 n n C30 H30 XAT sing 1064 n n C31 C32 XAT doub 1065 e n C31 H31 XAT sing 1066 n n C32 C33 XAT sing 1067 n n C32 H32 XAT sing 1068 n n C33 C34 XAT doub 1069 e n C33 C40 XAT sing 1070 n n C34 C35 XAT sing 1071 n n C34 H34 XAT sing 1072 n n C35 H35 XAT sing 1073 n n C36 H361 XAT sing 1074 n n C36 H362 XAT sing 1075 n n C36 H363 XAT sing 1076 n n C37 H371 XAT sing 1077 n n C37 H372 XAT sing 1078 n n C37 H373 XAT sing 1079 n n C38 H381 XAT sing 1080 n n C38 H382 XAT sing 1081 n n C38 H383 XAT sing 1082 n n C39 H391 XAT sing 1083 n n C39 H392 XAT sing 1084 n n C39 H393 XAT sing 1085 n n C40 H401 XAT sing 1086 n n C40 H402 XAT sing 1087 n n C40 H403 XAT sing 1088 n n O23 H1 XAT sing 1089 n n # _atom_sites.entry_id 8IX1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CHL G 1 601 601 CHL CHL . E 3 CLA G 1 602 602 CLA CLA . F 3 CLA G 1 603 603 CLA CLA . G 3 CLA G 1 604 604 CLA CLA . H 2 CHL G 1 605 605 CHL CHL . I 2 CHL G 1 606 606 CHL CHL . J 2 CHL G 1 607 608 CHL CHL . K 2 CHL G 1 608 609 CHL CHL . L 3 CLA G 1 609 610 CLA CLA . M 3 CLA G 1 610 611 CLA CLA . N 3 CLA G 1 611 612 CLA CLA . O 3 CLA G 1 612 613 CLA CLA . P 3 CLA G 1 613 614 CLA CLA . Q 4 LUT G 1 614 1620 LUT LUT . R 4 LUT G 1 615 1621 LUT LUT . S 5 XAT G 1 616 1622 XAT XAT . T 6 NEX G 1 617 1623 NEX NEX . U 7 LHG G 1 618 2630 LHG LHG . V 2 CHL G 1 619 607 CHL CHL . W 2 CHL N 1 301 607 CHL CHL . X 2 CHL N 1 302 601 CHL CHL . Y 3 CLA N 1 303 602 CLA CLA . Z 3 CLA N 1 304 603 CLA CLA . AA 3 CLA N 1 305 604 CLA CLA . BA 2 CHL N 1 306 605 CHL CHL . CA 2 CHL N 1 307 606 CHL CHL . DA 2 CHL N 1 308 607 CHL CHL . EA 2 CHL N 1 309 608 CHL CHL . FA 2 CHL N 1 310 609 CHL CHL . GA 3 CLA N 1 311 610 CLA CLA . HA 3 CLA N 1 312 611 CLA CLA . IA 3 CLA N 1 313 612 CLA CLA . JA 3 CLA N 1 314 613 CLA CLA . KA 3 CLA N 1 315 614 CLA CLA . LA 4 LUT N 1 316 1620 LUT LUT . MA 4 LUT N 1 317 1621 LUT LUT . NA 5 XAT N 1 318 1622 XAT XAT . OA 6 NEX N 1 319 1623 NEX NEX . PA 7 LHG N 1 320 2630 LHG LHG . QA 5 XAT N 1 321 1622 XAT XAT . RA 2 CHL Y 1 601 601 CHL CHL . SA 3 CLA Y 1 602 602 CLA CLA . TA 3 CLA Y 1 603 603 CLA CLA . UA 3 CLA Y 1 604 604 CLA CLA . VA 2 CHL Y 1 605 605 CHL CHL . WA 2 CHL Y 1 606 606 CHL CHL . XA 2 CHL Y 1 607 608 CHL CHL . YA 2 CHL Y 1 608 609 CHL CHL . ZA 3 CLA Y 1 609 610 CLA CLA . AB 3 CLA Y 1 610 611 CLA CLA . BB 3 CLA Y 1 611 612 CLA CLA . CB 3 CLA Y 1 612 613 CLA CLA . DB 3 CLA Y 1 613 614 CLA CLA . EB 4 LUT Y 1 614 1620 LUT LUT . FB 4 LUT Y 1 615 1621 LUT LUT . GB 6 NEX Y 1 616 1623 NEX NEX . HB 7 LHG Y 1 617 2630 LHG LHG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XAT . . . NA 5 99.717 105.255 101.164 1 23.31 ? C1 XAT 318 N 1 HETATM 2 C C2 XAT . . . NA 5 98.36 105.888 101.421 1 22.6 ? C2 XAT 318 N 1 HETATM 3 C C3 XAT . . . NA 5 98.507 107.39 101.322 1 24.14 ? C3 XAT 318 N 1 HETATM 4 C C4 XAT . . . NA 5 98.627 107.683 99.84 1 22.45 ? C4 XAT 318 N 1 HETATM 5 C C5 XAT . . . NA 5 99.822 107.001 99.168 1 22.22 ? C5 XAT 318 N 1 HETATM 6 C C6 XAT . . . NA 5 100.369 105.719 99.841 1 22.01 ? C6 XAT 318 N 1 HETATM 7 C C7 XAT . . . NA 5 100.738 104.632 98.841 1 20.84 ? C7 XAT 318 N 1 HETATM 8 C C8 XAT . . . NA 5 102.028 104.432 98.604 1 23.68 ? C8 XAT 318 N 1 HETATM 9 C C9 XAT . . . NA 5 102.494 103.402 97.669 1 24.2 ? C9 XAT 318 N 1 HETATM 10 C C10 XAT . . . NA 5 103.812 103.239 97.549 1 28.32 ? C10 XAT 318 N 1 HETATM 11 C C11 XAT . . . NA 5 104.39 102.239 96.67 1 24.7 ? C11 XAT 318 N 1 HETATM 12 C C12 XAT . . . NA 5 105.708 102.128 96.683 1 27.66 ? C12 XAT 318 N 1 HETATM 13 C C13 XAT . . . NA 5 106.393 101.13 95.854 1 23.18 ? C13 XAT 318 N 1 HETATM 14 C C14 XAT . . . NA 5 107.708 101.251 95.654 1 23.25 ? C14 XAT 318 N 1 HETATM 15 C C15 XAT . . . NA 5 108.411 100.247 94.874 1 27.03 ? C15 XAT 318 N 1 HETATM 16 C C16 XAT . . . NA 5 99.554 103.74 101.204 1 24.34 ? C16 XAT 318 N 1 HETATM 17 C C17 XAT . . . NA 5 100.66 105.632 102.301 1 21.21 ? C17 XAT 318 N 1 HETATM 18 C C18 XAT . . . NA 5 99.762 106.958 97.635 1 21.31 ? C18 XAT 318 N 1 HETATM 19 C C19 XAT . . . NA 5 101.527 102.566 96.885 1 22.2 ? C19 XAT 318 N 1 HETATM 20 C C20 XAT . . . NA 5 105.615 99.999 95.247 1 29.84 ? C20 XAT 318 N 1 HETATM 21 O O3 XAT . . . NA 5 97.361 108.049 101.869 1 27.8 ? O3 XAT 318 N 1 HETATM 22 O O4 XAT . . . NA 5 101.087 106.96 99.836 1 26.84 ? O4 XAT 318 N 1 HETATM 23 C C21 XAT . . . NA 5 117.307 92.209 92.045 1 21.22 ? C21 XAT 318 N 1 HETATM 24 C C22 XAT . . . NA 5 118.616 91.493 91.767 1 29.14 ? C22 XAT 318 N 1 HETATM 25 C C23 XAT . . . NA 5 118.631 90.974 90.35 1 22.14 ? C23 XAT 318 N 1 HETATM 26 C C24 XAT . . . NA 5 118.797 92.194 89.468 1 24.87 ? C24 XAT 318 N 1 HETATM 27 C C25 XAT . . . NA 5 117.621 93.168 89.591 1 26.83 ? C25 XAT 318 N 1 HETATM 28 C C26 XAT . . . NA 5 116.829 93.162 90.922 1 24.15 ? C26 XAT 318 N 1 HETATM 29 C C27 XAT . . . NA 5 116.357 94.536 91.375 1 20.52 ? C27 XAT 318 N 1 HETATM 30 C C28 XAT . . . NA 5 115.086 94.901 91.215 1 23.59 ? C28 XAT 318 N 1 HETATM 31 C C29 XAT . . . NA 5 114.659 96.225 91.694 1 22.79 ? C29 XAT 318 N 1 HETATM 32 C C30 XAT . . . NA 5 113.444 96.712 91.407 1 19.9 ? C30 XAT 318 N 1 HETATM 33 C C31 XAT . . . NA 5 113.078 98.01 91.956 1 22.15 ? C31 XAT 318 N 1 HETATM 34 C C32 XAT . . . NA 5 111.861 98.12 92.461 1 24.14 ? C32 XAT 318 N 1 HETATM 35 C C33 XAT . . . NA 5 111.399 99.358 93.096 1 23.91 ? C33 XAT 318 N 1 HETATM 36 C C34 XAT . . . NA 5 110.232 99.302 93.736 1 25.78 ? C34 XAT 318 N 1 HETATM 37 C C35 XAT . . . NA 5 109.654 100.422 94.457 1 25.35 ? C35 XAT 318 N 1 HETATM 38 C C36 XAT . . . NA 5 117.496 92.953 93.363 1 36.78 ? C36 XAT 318 N 1 HETATM 39 C C37 XAT . . . NA 5 116.229 91.157 92.248 1 26.94 ? C37 XAT 318 N 1 HETATM 40 C C38 XAT . . . NA 5 117.857 94.569 89.017 1 20.95 ? C38 XAT 318 N 1 HETATM 41 C C39 XAT . . . NA 5 115.605 97.02 92.539 1 30.36 ? C39 XAT 318 N 1 HETATM 42 C C40 XAT . . . NA 5 112.221 100.609 93.062 1 22.02 ? C40 XAT 318 N 1 HETATM 43 O O23 XAT . . . NA 5 119.732 90.082 90.166 1 39.19 ? O23 XAT 318 N 1 HETATM 44 O O24 XAT . . . NA 5 116.299 92.635 89.698 1 25.59 ? O24 XAT 318 N 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #