data_8IX1 # _model_server_result.job_id lPUjk6S6PWqaIbdin5lOPQ _model_server_result.datetime_utc '2025-09-10 08:42:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ix1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":618}' # _entry.id 8IX1 # _exptl.entry_id 8IX1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 722.97 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8IX1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8IX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 U N N ? 7 PA N N ? 7 HB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 52 G GLU 65 1_555 E MG CLA . G CLA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A O HIS 107 G HIS 120 1_555 H MG CHL . G CHL 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc3 A OE2 GLU 126 G GLU 139 1_555 K MG CHL . G CHL 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc4 A OE2 GLU 167 G GLU 180 1_555 L MG CLA . G CLA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc5 B OE1 GLU 52 N GLU 65 1_555 Y MG CLA . N CLA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc6 B OD1 ASN 170 N ASN 183 1_555 IA MG CLA . N CLA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc7 HA MG CLA . N CLA 312 1_555 PA O4 LHG . N LHG 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc8 C OE1 GLU 52 Y GLU 65 1_555 SA MG CLA . Y CLA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 C OE2 GLU 126 Y GLU 139 1_555 YA MG CHL . Y CHL 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc10 AB MG CLA . Y CLA 610 1_555 HB O4 LHG . Y LHG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C38 H75 O10 P' _chem_comp.formula_weight 722.97 _chem_comp.id LHG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 LHG sing 481 n n O1 HO1 LHG sing 482 n n C1 C2 LHG sing 483 n n C1 HC11 LHG sing 484 n n C1 HC12 LHG sing 485 n n C2 O2 LHG sing 486 n n C2 C3 LHG sing 487 n n C2 HC2 LHG sing 488 n n O2 H02 LHG sing 489 n n C3 O3 LHG sing 490 n n C3 HC31 LHG sing 491 n n C3 HC32 LHG sing 492 n n O3 P LHG sing 493 n n P O4 LHG sing 494 n n P O5 LHG doub 495 n n P O6 LHG sing 496 n n O4 HO4 LHG sing 497 n n O6 C4 LHG sing 498 n n C4 C5 LHG sing 499 n n C4 HC41 LHG sing 500 n n C4 HC42 LHG sing 501 n n C5 C6 LHG sing 502 n n C5 O7 LHG sing 503 n n C5 HC5 LHG sing 504 n n C6 O8 LHG sing 505 n n C6 HC61 LHG sing 506 n n C6 HC62 LHG sing 507 n n O7 C7 LHG sing 508 n n C7 O9 LHG doub 509 n n C7 C8 LHG sing 510 n n C8 C9 LHG sing 511 n n C8 HC81 LHG sing 512 n n C8 HC82 LHG sing 513 n n C9 C10 LHG sing 514 n n C9 HC91 LHG sing 515 n n C9 HC92 LHG sing 516 n n C10 C11 LHG sing 517 n n C10 H101 LHG sing 518 n n C10 H102 LHG sing 519 n n O8 C23 LHG sing 520 n n C23 O10 LHG doub 521 n n C23 C24 LHG sing 522 n n C24 C25 LHG sing 523 n n C24 H241 LHG sing 524 n n C24 H242 LHG sing 525 n n C11 C12 LHG sing 526 n n C11 H111 LHG sing 527 n n C11 H112 LHG sing 528 n n C12 C13 LHG sing 529 n n C12 H121 LHG sing 530 n n C12 H122 LHG sing 531 n n C13 C14 LHG sing 532 n n C13 H131 LHG sing 533 n n C13 H132 LHG sing 534 n n C14 C15 LHG sing 535 n n C14 H141 LHG sing 536 n n C14 H142 LHG sing 537 n n C15 C16 LHG sing 538 n n C15 H151 LHG sing 539 n n C15 H152 LHG sing 540 n n C16 C17 LHG sing 541 n n C16 H161 LHG sing 542 n n C16 H162 LHG sing 543 n n C17 C18 LHG sing 544 n n C17 H171 LHG sing 545 n n C17 H172 LHG sing 546 n n C18 C19 LHG sing 547 n n C18 H181 LHG sing 548 n n C18 H182 LHG sing 549 n n C19 C20 LHG sing 550 n n C19 H191 LHG sing 551 n n C19 H192 LHG sing 552 n n C20 C21 LHG sing 553 n n C20 H201 LHG sing 554 n n C20 H202 LHG sing 555 n n C21 C22 LHG sing 556 n n C21 H211 LHG sing 557 n n C21 H212 LHG sing 558 n n C22 H221 LHG sing 559 n n C22 H222 LHG sing 560 n n C22 H223 LHG sing 561 n n C25 C26 LHG sing 562 n n C25 H251 LHG sing 563 n n C25 H252 LHG sing 564 n n C26 C27 LHG sing 565 n n C26 H261 LHG sing 566 n n C26 H262 LHG sing 567 n n C27 C28 LHG sing 568 n n C27 H271 LHG sing 569 n n C27 H272 LHG sing 570 n n C28 C29 LHG sing 571 n n C28 H281 LHG sing 572 n n C28 H282 LHG sing 573 n n C29 C30 LHG sing 574 n n C29 H291 LHG sing 575 n n C29 H292 LHG sing 576 n n C30 C31 LHG sing 577 n n C30 H301 LHG sing 578 n n C30 H302 LHG sing 579 n n C31 C32 LHG sing 580 n n C31 H311 LHG sing 581 n n C31 H312 LHG sing 582 n n C32 C33 LHG sing 583 n n C32 H321 LHG sing 584 n n C32 H322 LHG sing 585 n n C33 C34 LHG sing 586 n n C33 H331 LHG sing 587 n n C33 H332 LHG sing 588 n n C34 C35 LHG sing 589 n n C34 H341 LHG sing 590 n n C34 H342 LHG sing 591 n n C35 C36 LHG sing 592 n n C35 H351 LHG sing 593 n n C35 H352 LHG sing 594 n n C36 C37 LHG sing 595 n n C36 H361 LHG sing 596 n n C36 H362 LHG sing 597 n n C37 C38 LHG sing 598 n n C37 H371 LHG sing 599 n n C37 H372 LHG sing 600 n n C38 H381 LHG sing 601 n n C38 H382 LHG sing 602 n n C38 H383 LHG sing 603 n n # _atom_sites.entry_id 8IX1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CHL G 1 601 601 CHL CHL . E 3 CLA G 1 602 602 CLA CLA . F 3 CLA G 1 603 603 CLA CLA . G 3 CLA G 1 604 604 CLA CLA . H 2 CHL G 1 605 605 CHL CHL . I 2 CHL G 1 606 606 CHL CHL . J 2 CHL G 1 607 608 CHL CHL . K 2 CHL G 1 608 609 CHL CHL . L 3 CLA G 1 609 610 CLA CLA . M 3 CLA G 1 610 611 CLA CLA . N 3 CLA G 1 611 612 CLA CLA . O 3 CLA G 1 612 613 CLA CLA . P 3 CLA G 1 613 614 CLA CLA . Q 4 LUT G 1 614 1620 LUT LUT . R 4 LUT G 1 615 1621 LUT LUT . S 5 XAT G 1 616 1622 XAT XAT . T 6 NEX G 1 617 1623 NEX NEX . U 7 LHG G 1 618 2630 LHG LHG . V 2 CHL G 1 619 607 CHL CHL . W 2 CHL N 1 301 607 CHL CHL . X 2 CHL N 1 302 601 CHL CHL . Y 3 CLA N 1 303 602 CLA CLA . Z 3 CLA N 1 304 603 CLA CLA . AA 3 CLA N 1 305 604 CLA CLA . BA 2 CHL N 1 306 605 CHL CHL . CA 2 CHL N 1 307 606 CHL CHL . DA 2 CHL N 1 308 607 CHL CHL . EA 2 CHL N 1 309 608 CHL CHL . FA 2 CHL N 1 310 609 CHL CHL . GA 3 CLA N 1 311 610 CLA CLA . HA 3 CLA N 1 312 611 CLA CLA . IA 3 CLA N 1 313 612 CLA CLA . JA 3 CLA N 1 314 613 CLA CLA . KA 3 CLA N 1 315 614 CLA CLA . LA 4 LUT N 1 316 1620 LUT LUT . MA 4 LUT N 1 317 1621 LUT LUT . NA 5 XAT N 1 318 1622 XAT XAT . OA 6 NEX N 1 319 1623 NEX NEX . PA 7 LHG N 1 320 2630 LHG LHG . QA 5 XAT N 1 321 1622 XAT XAT . RA 2 CHL Y 1 601 601 CHL CHL . SA 3 CLA Y 1 602 602 CLA CLA . TA 3 CLA Y 1 603 603 CLA CLA . UA 3 CLA Y 1 604 604 CLA CLA . VA 2 CHL Y 1 605 605 CHL CHL . WA 2 CHL Y 1 606 606 CHL CHL . XA 2 CHL Y 1 607 608 CHL CHL . YA 2 CHL Y 1 608 609 CHL CHL . ZA 3 CLA Y 1 609 610 CLA CLA . AB 3 CLA Y 1 610 611 CLA CLA . BB 3 CLA Y 1 611 612 CLA CLA . CB 3 CLA Y 1 612 613 CLA CLA . DB 3 CLA Y 1 613 614 CLA CLA . EB 4 LUT Y 1 614 1620 LUT LUT . FB 4 LUT Y 1 615 1621 LUT LUT . GB 6 NEX Y 1 616 1623 NEX NEX . HB 7 LHG Y 1 617 2630 LHG LHG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LHG . . . U 7 123.113 102.761 146.928 1 27.21 ? O1 LHG 618 G 1 HETATM 2 C C1 LHG . . . U 7 123.235 102.004 145.72 1 22.38 ? C1 LHG 618 G 1 HETATM 3 C C2 LHG . . . U 7 122.083 102.359 144.79 1 24.25 ? C2 LHG 618 G 1 HETATM 4 O O2 LHG . . . U 7 122.218 101.636 143.563 1 26.59 ? O2 LHG 618 G 1 HETATM 5 C C3 LHG . . . U 7 122.109 103.853 144.493 1 25.39 ? C3 LHG 618 G 1 HETATM 6 O O3 LHG . . . U 7 120.883 104.214 143.865 1 25.9 ? O3 LHG 618 G 1 HETATM 7 P P LHG . . . U 7 120.896 105.03 142.48 1 25.65 ? P LHG 618 G 1 HETATM 8 O O4 LHG . . . U 7 120.913 106.506 142.787 1 27.98 ? O4 LHG 618 G 1 HETATM 9 O O5 LHG . . . U 7 121.952 104.432 141.585 1 26.78 ? O5 LHG 618 G 1 HETATM 10 O O6 LHG . . . U 7 119.46 104.66 141.863 1 25.33 ? O6 LHG 618 G 1 HETATM 11 C C4 LHG . . . U 7 119.381 104.135 140.542 1 25.72 ? C4 LHG 618 G 1 HETATM 12 C C5 LHG . . . U 7 118.403 104.958 139.722 1 22.73 ? C5 LHG 618 G 1 HETATM 13 C C6 LHG . . . U 7 118.883 106.4 139.709 1 21.45 ? C6 LHG 618 G 1 HETATM 14 O O7 LHG . . . U 7 118.363 104.467 138.384 1 26.18 ? O7 LHG 618 G 1 HETATM 15 C C7 LHG . . . U 7 117.074 103.909 138.005 1 22.25 ? C7 LHG 618 G 1 HETATM 16 O O9 LHG . . . U 7 116.11 104.05 138.737 1 26.37 ? O9 LHG 618 G 1 HETATM 17 C C8 LHG . . . U 7 116.954 103.162 136.697 1 24.94 ? C8 LHG 618 G 1 HETATM 18 C C9 LHG . . . U 7 115.566 102.562 136.516 1 22.67 ? C9 LHG 618 G 1 HETATM 19 C C10 LHG . . . U 7 115.451 101.912 135.143 1 18.82 ? C10 LHG 618 G 1 HETATM 20 O O8 LHG . . . U 7 117.929 107.197 139.024 1 26.42 ? O8 LHG 618 G 1 HETATM 21 C C23 LHG . . . U 7 118.356 108.135 138.004 1 27.55 ? C23 LHG 618 G 1 HETATM 22 O O10 LHG . . . U 7 119.547 108.311 137.81 1 28.97 ? O10 LHG 618 G 1 HETATM 23 C C24 LHG . . . U 7 117.315 108.912 137.238 1 21.84 ? C24 LHG 618 G 1 HETATM 24 C C11 LHG . . . U 7 114.132 101.172 134.951 1 19.7 ? C11 LHG 618 G 1 HETATM 25 C C12 LHG . . . U 7 113.107 101.989 134.174 1 23.59 ? C12 LHG 618 G 1 HETATM 26 C C13 LHG . . . U 7 111.765 101.268 134.188 1 20.73 ? C13 LHG 618 G 1 HETATM 27 C C14 LHG . . . U 7 110.826 101.757 133.092 1 20.93 ? C14 LHG 618 G 1 HETATM 28 C C15 LHG . . . U 7 111.391 101.456 131.709 1 23.34 ? C15 LHG 618 G 1 HETATM 29 C C16 LHG . . . U 7 110.414 101.837 130.603 1 23.19 ? C16 LHG 618 G 1 HETATM 30 C C17 LHG . . . U 7 111.073 101.705 129.235 1 22.23 ? C17 LHG 618 G 1 HETATM 31 C C18 LHG . . . U 7 110.131 102.117 128.112 1 21 ? C18 LHG 618 G 1 HETATM 32 C C19 LHG . . . U 7 109.025 101.086 127.92 1 19.45 ? C19 LHG 618 G 1 HETATM 33 C C20 LHG . . . U 7 108.115 101.486 126.766 1 24.79 ? C20 LHG 618 G 1 HETATM 34 C C21 LHG . . . U 7 107.103 100.393 126.448 1 20.27 ? C21 LHG 618 G 1 HETATM 35 C C22 LHG . . . U 7 106.152 100.841 125.36 1 24.18 ? C22 LHG 618 G 1 HETATM 36 C C25 LHG . . . U 7 116.636 108.054 136.174 1 21.84 ? C25 LHG 618 G 1 HETATM 37 C C26 LHG . . . U 7 115.537 107.172 136.755 1 22.47 ? C26 LHG 618 G 1 HETATM 38 C C27 LHG . . . U 7 114.721 106.477 135.667 1 23.96 ? C27 LHG 618 G 1 HETATM 39 C C28 LHG . . . U 7 113.632 105.593 136.271 1 23.47 ? C28 LHG 618 G 1 HETATM 40 C C29 LHG . . . U 7 112.801 106.412 137.238 1 23.75 ? C29 LHG 618 G 1 HETATM 41 C C30 LHG . . . U 7 111.753 105.685 138.065 1 22.08 ? C30 LHG 618 G 1 HETATM 42 C C31 LHG . . . U 7 110.731 104.985 137.188 1 22.03 ? C31 LHG 618 G 1 HETATM 43 C C32 LHG . . . U 7 109.678 104.282 138.031 1 22.56 ? C32 LHG 618 G 1 HETATM 44 C C33 LHG . . . U 7 110.332 103.138 138.786 1 23.45 ? C33 LHG 618 G 1 HETATM 45 C C34 LHG . . . U 7 110.901 102.098 137.827 1 23.52 ? C34 LHG 618 G 1 HETATM 46 C C35 LHG . . . U 7 111.588 100.99 138.61 1 23.8 ? C35 LHG 618 G 1 HETATM 47 C C36 LHG . . . U 7 112.699 101.576 139.473 1 23.66 ? C36 LHG 618 G 1 HETATM 48 C C37 LHG . . . U 7 113.21 100.553 140.476 1 22.76 ? C37 LHG 618 G 1 HETATM 49 C C38 LHG . . . U 7 112.119 100.128 141.434 1 20.83 ? C38 LHG 618 G 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #